2018-12-19T20:16:01.228Z,1545250561.228 [Supervisor](DEBUG): Initializing supervisor.
2018-12-19T20:16:01.231Z,1545250561.231 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-12-19T20:16:01.231Z,1545250561.231 [SyncHandler](INFO): Protected caller Thread ID is 800
2018-12-19T20:16:01.232Z,1545250561.232 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-12-19T20:16:01.233Z,1545250561.233 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-12-19T20:16:01.233Z,1545250561.233 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 801
2018-12-19T20:16:01.236Z,1545250561.236 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-12-19T20:16:01.247Z,1545250561.247 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-12-19T20:16:01.248Z,1545250561.248 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-12-19T20:16:01.249Z,1545250561.249 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 802
2018-12-19T20:16:01.250Z,1545250561.250 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-12-19T20:16:01.250Z,1545250561.250 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-12-19T20:16:01.251Z,1545250561.251 [logger ThreadHandler](INFO): Protected caller Thread ID is 803
2018-12-19T20:16:01.253Z,1545250561.253 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-12-19T20:16:01.253Z,1545250561.253 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-12-19T20:16:01.257Z,1545250561.257 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-12-19T20:16:01.354Z,1545250561.354 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-12-19T20:16:01.355Z,1545250561.355 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-12-19T20:16:01.454Z,1545250561.454 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-12-19T20:16:01.456Z,1545250561.456 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-12-19T20:16:01.645Z,1545250561.645 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-12-19T20:16:01.647Z,1545250561.647 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-12-19T20:16:01.998Z,1545250561.998 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-12-19T20:16:01.999Z,1545250561.999 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-12-19T20:16:02.315Z,1545250562.315 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-12-19T20:16:02.315Z,1545250562.315 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-12-19T20:16:02.753Z,1545250562.753 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-12-19T20:16:02.755Z,1545250562.755 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-12-19T20:16:03.219Z,1545250563.219 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-12-19T20:16:03.219Z,1545250563.219 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-12-19T20:16:03.667Z,1545250563.667 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-12-19T20:16:03.668Z,1545250563.668 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-12-19T20:16:03.750Z,1545250563.750 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-12-19T20:16:04.053Z,1545250564.053 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-12-19T20:16:04.055Z,1545250564.055 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-12-19T20:16:04.200Z,1545250564.200 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-12-19T20:16:04.202Z,1545250564.202 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-12-19T20:16:04.417Z,1545250564.417 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-12-19T20:16:04.418Z,1545250564.418 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-12-19T20:16:04.709Z,1545250564.709 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-12-19T20:16:04.710Z,1545250564.710 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-12-19T20:16:04.833Z,1545250564.833 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-12-19T20:16:04.834Z,1545250564.834 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-12-19T20:16:05.709Z,1545250565.709 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-12-19T20:16:05.711Z,1545250565.711 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-makai/
2018-12-19T20:16:05.713Z,1545250565.713 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Battery.cfg
2018-12-19T20:16:05.941Z,1545250565.941 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2018-12-19T20:16:05.943Z,1545250565.943 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/logger.cfg
2018-12-19T20:16:06.046Z,1545250566.046 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Science.cfg
2018-12-19T20:16:06.194Z,1545250566.194 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Control.cfg
2018-12-19T20:16:06.287Z,1545250566.287 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Simulator.cfg
2018-12-19T20:16:06.373Z,1545250566.373 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Sensor.cfg
2018-12-19T20:16:06.529Z,1545250566.529 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/vehicle.cfg
2018-12-19T20:16:06.726Z,1545250566.726 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Servo.cfg
2018-12-19T20:16:06.823Z,1545250566.823 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Navigation.cfg
2018-12-19T20:16:06.917Z,1545250566.917 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/BIT.cfg
2018-12-19T20:16:07.014Z,1545250567.014 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/secure.cfg
2018-12-19T20:16:07.098Z,1545250567.098 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-makai/root/
2018-12-19T20:16:07.099Z,1545250567.099 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2018-12-19T20:16:07.108Z,1545250567.108 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-12-19T20:16:07.235Z,1545250567.235 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-12-19T20:16:07.235Z,1545250567.235 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-12-19T20:16:07.259Z,1545250567.259 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-12-19T20:16:07.260Z,1545250567.260 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-12-19T20:16:07.314Z,1545250567.314 [DepthRateCalculator] Loaded
2018-12-19T20:16:07.315Z,1545250567.315 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-12-19T20:16:07.320Z,1545250567.320 [PitchRateCalculator] Loaded
2018-12-19T20:16:07.321Z,1545250567.321 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-12-19T20:16:07.336Z,1545250567.336 [SpeedCalculator] Loaded
2018-12-19T20:16:07.336Z,1545250567.336 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-12-19T20:16:07.356Z,1545250567.356 [TempGradientCalculator] Loaded
2018-12-19T20:16:07.357Z,1545250567.357 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-12-19T20:16:07.362Z,1545250567.362 [YawRateCalculator] Loaded
2018-12-19T20:16:07.363Z,1545250567.363 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-12-19T20:16:07.401Z,1545250567.401 [ElevatorOffsetCalculator] Loaded
2018-12-19T20:16:07.401Z,1545250567.401 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-12-19T20:16:07.401Z,1545250567.401 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-12-19T20:16:07.403Z,1545250567.403 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-12-19T20:16:07.444Z,1545250567.444 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-12-19T20:16:07.444Z,1545250567.444 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-12-19T20:16:07.619Z,1545250567.619 [Module Loader](ERROR): Cannot load library: libboost_system.so.1.63.0: cannot open shared object file: No such file or directory
2018-12-19T20:16:07.619Z,1545250567.619 [Module Loader](ERROR): Could not load the module at Modules/Sensor.so
2018-12-19T20:16:07.620Z,1545250567.620 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-12-19T20:16:07.778Z,1545250567.778 [SBIT](DEBUG): Construct Startup Built In Test.
2018-12-19T20:16:07.803Z,1545250567.803 [SBIT] Loaded
2018-12-19T20:16:07.803Z,1545250567.803 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-12-19T20:16:07.804Z,1545250567.804 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-12-19T20:16:07.831Z,1545250567.831 [IBIT] Loaded
2018-12-19T20:16:07.831Z,1545250567.831 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-12-19T20:16:07.834Z,1545250567.834 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-12-19T20:16:08.210Z,1545250568.210 [CBIT] Loaded
2018-12-19T20:16:08.210Z,1545250568.210 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-12-19T20:16:08.210Z,1545250568.210 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-12-19T20:16:08.211Z,1545250568.211 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-12-19T20:16:08.524Z,1545250568.524 [CTD_Seabird] Loaded
2018-12-19T20:16:08.524Z,1545250568.524 [ComponentRegistry](DEBUG): Component "CTD_Seabird" handled in its own thread.
2018-12-19T20:16:08.525Z,1545250568.525 [CTD_Seabird ThreadHandler](DEBUG): Created PCaller Thread at 4064D4E0
2018-12-19T20:16:08.526Z,1545250568.526 [CTD_Seabird ThreadHandler](INFO): Protected caller Thread ID is 883
2018-12-19T20:16:08.542Z,1545250568.542 [ESPComponent] Loaded
2018-12-19T20:16:08.543Z,1545250568.543 [ComponentRegistry](DEBUG): SyncComponent "ESPComponent" handled in the control thread.
2018-12-19T20:16:08.556Z,1545250568.556 [PAR_Licor] Loaded
2018-12-19T20:16:08.556Z,1545250568.556 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-12-19T20:16:08.603Z,1545250568.603 [WetLabsBB2FL] Loaded
2018-12-19T20:16:08.603Z,1545250568.603 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-12-19T20:16:08.604Z,1545250568.604 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 4067D4E0
2018-12-19T20:16:08.605Z,1545250568.605 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 884
2018-12-19T20:16:08.605Z,1545250568.605 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-12-19T20:16:08.606Z,1545250568.606 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-12-19T20:16:08.883Z,1545250568.883 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-12-19T20:16:08.884Z,1545250568.884 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-12-19T20:16:08.970Z,1545250568.970 [VerticalControl](DEBUG): Construct VerticalControl.
2018-12-19T20:16:09.060Z,1545250569.060 [VerticalControl] Loaded
2018-12-19T20:16:09.060Z,1545250569.060 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-12-19T20:16:09.061Z,1545250569.061 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-12-19T20:16:09.119Z,1545250569.119 [HorizontalControl] Loaded
2018-12-19T20:16:09.119Z,1545250569.119 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-12-19T20:16:09.120Z,1545250569.120 [SpeedControl](DEBUG): Construct SpeedControl.
2018-12-19T20:16:09.125Z,1545250569.125 [SpeedControl] Loaded
2018-12-19T20:16:09.125Z,1545250569.125 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-12-19T20:16:09.126Z,1545250569.126 [LoopControl](DEBUG): Construct LoopControl.
2018-12-19T20:16:09.126Z,1545250569.126 [LoopControl] Loaded
2018-12-19T20:16:09.127Z,1545250569.127 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-12-19T20:16:09.127Z,1545250569.127 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-12-19T20:16:09.128Z,1545250569.128 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-12-19T20:16:09.229Z,1545250569.229 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-12-19T20:16:09.230Z,1545250569.230 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-12-19T20:16:09.345Z,1545250569.345 [BuoyancyServo] Loaded
2018-12-19T20:16:09.345Z,1545250569.345 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-12-19T20:16:09.356Z,1545250569.356 [ElevatorServo] Loaded
2018-12-19T20:16:09.357Z,1545250569.357 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-12-19T20:16:09.367Z,1545250569.367 [MassServo] Loaded
2018-12-19T20:16:09.368Z,1545250569.368 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-12-19T20:16:09.378Z,1545250569.378 [RudderServo] Loaded
2018-12-19T20:16:09.379Z,1545250569.379 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-12-19T20:16:09.389Z,1545250569.389 [ThrusterServo] Loaded
2018-12-19T20:16:09.389Z,1545250569.389 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-12-19T20:16:09.390Z,1545250569.390 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-12-19T20:16:09.390Z,1545250569.390 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-12-19T20:16:09.501Z,1545250569.501 [DeadReckonUsingSpeedCalculator] Loaded
2018-12-19T20:16:09.501Z,1545250569.501 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-12-19T20:16:09.517Z,1545250569.517 [NavChart] Loaded
2018-12-19T20:16:09.518Z,1545250569.518 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-12-19T20:16:09.522Z,1545250569.522 [UniversalFixResidualReporter] Loaded
2018-12-19T20:16:09.522Z,1545250569.522 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-12-19T20:16:09.522Z,1545250569.522 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-12-19T20:16:09.526Z,1545250569.526 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-12-19T20:16:09.527Z,1545250569.527 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-12-19T20:16:09.533Z,1545250569.533 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-12-19T20:16:09.534Z,1545250569.534 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 407D74E0
2018-12-19T20:16:09.534Z,1545250569.534 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 885
2018-12-19T20:16:09.539Z,1545250569.539 [Supervisor](INFO): Main Thread ID is 796
2018-12-19T20:16:09.539Z,1545250569.539 [Supervisor](DEBUG): Running supervisor.
2018-12-19T20:16:09.539Z,1545250569.539 [CommandLine ThreadHandler](INFO): Handler Thread ID is 886
2018-12-19T20:16:09.545Z,1545250569.545 [CommandLine](IMPORTANT): got command quit
2018-12-19T20:16:09.550Z,1545250569.550 [controlThread ThreadHandler](INFO): Handler Thread ID is 887
2018-12-19T20:16:09.550Z,1545250569.550 [controlThread](DEBUG): Initializing ControlThread
2018-12-19T20:16:09.551Z,1545250569.551 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-12-19T20:16:09.551Z,1545250569.551 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-12-19T20:16:09.552Z,1545250569.552 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-12-19T20:16:09.552Z,1545250569.552 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-12-19T20:16:09.553Z,1545250569.553 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-12-19T20:16:09.553Z,1545250569.553 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-12-19T20:16:09.554Z,1545250569.554 [SBIT](INFO): Initialize SBIT Component.
2018-12-19T20:16:09.554Z,1545250569.554 [SBIT](IMPORTANT): git: 2018-12-13-1-gf0e90a5
2018-12-19T20:16:09.554Z,1545250569.554 [SBIT](INFO): git hash: f0e90a53519ed2f91f39351bc58b7b0f50855756
2018-12-19T20:16:09.555Z,1545250569.555 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2018-12-19T20:16:09.556Z,1545250569.556 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #2 PREEMPT Thu Jan 11 20:13:48 PST 2018
Kernel Reported: #1 PREEMPT Tue Dec 18 21:19:28 PST 2018
2018-12-19T20:16:09.557Z,1545250569.557 [SBIT](INFO): Beginning SBIT in 24.000000 seconds.
2018-12-19T20:16:09.557Z,1545250569.557 [IBIT](INFO): Initialize IBIT Component.
2018-12-19T20:16:09.558Z,1545250569.558 [CBIT](DEBUG): Initialize CBIT Component.
2018-12-19T20:16:09.559Z,1545250569.559 [logger ThreadHandler](INFO): Handler Thread ID is 888
2018-12-19T20:16:09.569Z,1545250569.569 [CBIT](DEBUG): Initialized mux pins.
2018-12-19T20:16:09.569Z,1545250569.569 [CBIT](DEBUG): Initializing the watchdog timer.
2018-12-19T20:16:09.577Z,1545250569.577 [CTD_Seabird ThreadHandler](INFO): Handler Thread ID is 889
2018-12-19T20:16:09.578Z,1545250569.578 [CTD_Seabird](DEBUG): Initializing CTD_Seabird.
2018-12-19T20:16:09.581Z,1545250569.581 [CTD_Seabird](INFO): Opening uart, block timeout 10ths=20
2018-12-19T20:16:09.583Z,1545250569.583 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 891
2018-12-19T20:16:09.584Z,1545250569.584 [WetLabsBB2FL](INFO): Powering down
2018-12-19T20:16:09.597Z,1545250569.597 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-12-19T20:16:09.597Z,1545250569.597 [CBIT](DEBUG): Initializing heartbeat.
2018-12-19T20:16:09.633Z,1545250569.633 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 892
2018-12-19T20:16:09.641Z,1545250569.641 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-12-19T20:16:09.641Z,1545250569.641 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2018-12-19T20:16:09.641Z,1545250569.641 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-12-19T20:16:09.641Z,1545250569.641 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2018-12-19T20:16:09.642Z,1545250569.642 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-12-19T20:16:09.642Z,1545250569.642 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2018-12-19T20:16:09.642Z,1545250569.642 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-12-19T20:16:09.642Z,1545250569.642 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2018-12-19T20:16:09.642Z,1545250569.642 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-12-19T20:16:09.643Z,1545250569.643 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2018-12-19T20:16:09.643Z,1545250569.643 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-12-19T20:16:09.643Z,1545250569.643 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2018-12-19T20:16:09.643Z,1545250569.643 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-12-19T20:16:09.643Z,1545250569.643 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2018-12-19T20:16:09.643Z,1545250569.643 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-12-19T20:16:09.644Z,1545250569.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2018-12-19T20:16:09.669Z,1545250569.669 [CBIT](DEBUG): Deactivating GF circuits.
2018-12-19T20:16:09.669Z,1545250569.669 [CBIT](DEBUG): Deactivating emergency mode.
2018-12-19T20:16:09.709Z,1545250569.709 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-12-19T20:16:09.711Z,1545250569.711 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-12-19T20:16:09.712Z,1545250569.712 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-12-19T20:16:09.712Z,1545250569.712 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-12-19T20:16:09.714Z,1545250569.714 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-19T20:16:09.714Z,1545250569.714 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-19T20:16:09.715Z,1545250569.715 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-19T20:16:09.715Z,1545250569.715 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-12-19T20:16:09.716Z,1545250569.716 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-12-19T20:16:09.717Z,1545250569.717 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-12-19T20:16:09.818Z,1545250569.818 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-19T20:16:09.933Z,1545250569.933 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-12-19T20:16:09.934Z,1545250569.934 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-12-19T20:16:10.128Z,1545250570.128 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-12-19T20:16:10.130Z,1545250570.130 [Default:A.Wait](DEBUG): Construct Wait.
2018-12-19T20:16:10.131Z,1545250570.131 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-19T20:16:10.198Z,1545250570.198 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-12-19T20:16:10.201Z,1545250570.201 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-12-19T20:16:10.250Z,1545250570.250 [Default:E.Execute](DEBUG): Construct Execute.
2018-12-19T20:16:10.254Z,1545250570.254 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-12-19T20:16:10.268Z,1545250570.268 [controlThread](DEBUG): Component order: CycleStarter,ESPComponent,PAR_Licor,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,YawRateCalculator,ElevatorOffsetCalculator,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-12-19T20:16:10.304Z,1545250570.304 [ESPComponent](INFO): powering down ESP
2018-12-19T20:16:10.549Z,1545250570.549 [Supervisor](INFO): Stop Mission called by Supervisor::terminate
2018-12-19T20:16:10.552Z,1545250570.552 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T20:16:10.553Z,1545250570.553 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:10.701Z,1545250570.701 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2018-12-19T20:16:10.701Z,1545250570.701 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:10.702Z,1545250570.702 [CommandLine](INFO): Join timeout helper Thread ID is 894
2018-12-19T20:16:10.705Z,1545250570.705 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:10.725Z,1545250570.725 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2018-12-19T20:16:10.725Z,1545250570.725 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:10.725Z,1545250570.725 [NavChartDb](INFO): Join timeout helper Thread ID is 895
2018-12-19T20:16:11.326Z,1545250571.326 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-12-19T20:16:11.337Z,1545250571.337 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-12-19T20:16:11.363Z,1545250571.363 [ElevatorServo](DEBUG): Initializing EZServoServo.
2018-12-19T20:16:11.381Z,1545250571.381 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-12-19T20:16:11.391Z,1545250571.391 [MassServo](DEBUG): Initializing EZServoServo.
2018-12-19T20:16:11.401Z,1545250571.401 [MassServo](DEBUG): Initializing MassServo.
2018-12-19T20:16:11.407Z,1545250571.407 [RudderServo](DEBUG): Initializing EZServoServo.
2018-12-19T20:16:11.417Z,1545250571.417 [RudderServo](DEBUG): Initializing RudderServo.
2018-12-19T20:16:11.428Z,1545250571.428 [ThrusterServo](DEBUG): Initializing EZServoServo.
2018-12-19T20:16:11.457Z,1545250571.457 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-12-19T20:16:11.685Z,1545250571.685 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:11.973Z,1545250571.973 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:12.305Z,1545250572.305 [BuoyancyServo](ERROR): Buoyancy initialization uart error serial timeout
2018-12-19T20:16:12.305Z,1545250572.305 [BuoyancyServo](FAULT): Buoyancy failed to initialize
2018-12-19T20:16:12.305Z,1545250572.305 [BuoyancyServo] Communications Fault, FailCount= 1
2018-12-19T20:16:12.305Z,1545250572.305 [BuoyancyServo](ERROR): Communications Fault
2018-12-19T20:16:12.516Z,1545250572.516 [CBIT](ERROR): Communications Fault in component: BuoyancyServo
2018-12-19T20:16:12.526Z,1545250572.526 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:12.945Z,1545250572.945 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:13.345Z,1545250573.345 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:13.745Z,1545250573.745 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:14.145Z,1545250574.145 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:14.545Z,1545250574.545 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:14.630Z,1545250574.630 [CBIT](INFO): Clearing failed state for component BuoyancyServo
2018-12-19T20:16:14.630Z,1545250574.630 [BuoyancyServo] No Fault, FailCount= 1
2018-12-19T20:16:14.941Z,1545250574.941 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:15.341Z,1545250575.341 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:15.741Z,1545250575.741 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:16.150Z,1545250576.150 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:16.533Z,1545250576.533 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:16.554Z,1545250576.554 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-12-19T20:16:16.674Z,1545250576.674 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-12-19T20:16:16.933Z,1545250576.933 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:17.333Z,1545250577.333 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:17.598Z,1545250577.598 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T20:16:17.598Z,1545250577.598 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:17.601Z,1545250577.601 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2018-12-19T20:16:17.601Z,1545250577.601 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:17.601Z,1545250577.601 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 903
2018-12-19T20:16:17.685Z,1545250577.685 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T20:16:17.685Z,1545250577.685 [WetLabsBB2FL](INFO): Powering down
2018-12-19T20:16:17.686Z,1545250577.686 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:17.697Z,1545250577.697 [ComponentRegistry](INFO): Shutting down CTD_Seabird ThreadHandler
2018-12-19T20:16:17.697Z,1545250577.697 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:17.697Z,1545250577.697 [CTD_Seabird](INFO): Join timeout helper Thread ID is 904
2018-12-19T20:16:17.733Z,1545250577.733 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:18.133Z,1545250578.133 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:18.533Z,1545250578.533 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T20:16:18.601Z,1545250578.601 [CTD_Seabird ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T20:16:18.601Z,1545250578.601 [CTD_Seabird](INFO): Powering down
2018-12-19T20:16:18.745Z,1545250578.745 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:18.749Z,1545250578.749 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2018-12-19T20:16:18.749Z,1545250578.749 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:18.749Z,1545250578.749 [logger](INFO): Join timeout helper Thread ID is 905
2018-12-19T20:16:18.776Z,1545250578.776 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T20:16:18.776Z,1545250578.776 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:18.782Z,1545250578.782 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2018-12-19T20:16:18.782Z,1545250578.782 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:18.782Z,1545250578.782 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2018-12-19T20:16:18.782Z,1545250578.782 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:18.782Z,1545250578.782 [controlThread](INFO): Join timeout helper Thread ID is 906
2018-12-19T20:16:18.921Z,1545250578.921 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T20:16:18.921Z,1545250578.921 [controlThread](DEBUG): Uninitializing ControlThread
2018-12-19T20:16:18.923Z,1545250578.923 [DepthRateCalculator](DEBUG): Uninitializing DepthRateCalculator.
2018-12-19T20:16:18.924Z,1545250578.924 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2018-12-19T20:16:18.924Z,1545250578.924 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2018-12-19T20:16:18.925Z,1545250578.925 [MissionManager](INFO): Uninitializing Mission Default
2018-12-19T20:16:18.928Z,1545250578.928 [MissionManager](INFO): Uninitializing Mission Startup
2018-12-19T20:16:18.929Z,1545250578.929 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2018-12-19T20:16:18.929Z,1545250578.929 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2018-12-19T20:16:18.929Z,1545250578.929 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2018-12-19T20:16:18.930Z,1545250578.930 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2018-12-19T20:16:18.930Z,1545250578.930 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-12-19T20:16:18.930Z,1545250578.930 [BuoyancyServo](INFO): Powering down
2018-12-19T20:16:19.081Z,1545250579.081 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2018-12-19T20:16:19.081Z,1545250579.081 [ElevatorServo](INFO): Powering down
2018-12-19T20:16:19.098Z,1545250579.098 [MassServo](DEBUG): Uninitialize Mass Servo.
2018-12-19T20:16:19.098Z,1545250579.098 [MassServo](INFO): Powering down
2018-12-19T20:16:19.116Z,1545250579.116 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2018-12-19T20:16:19.116Z,1545250579.116 [RudderServo](INFO): Powering down
2018-12-19T20:16:19.116Z,1545250579.116 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2018-12-19T20:16:19.117Z,1545250579.117 [ThrusterServo](INFO): Powering down
2018-12-19T20:16:19.118Z,1545250579.118 [SBIT](DEBUG): Uninitialize SBIT Component.
2018-12-19T20:16:19.118Z,1545250579.118 [IBIT](DEBUG): Uninitialize IBIT Component.
2018-12-19T20:16:19.118Z,1545250579.118 [CBIT](DEBUG): Uninitialize CBIT Component.
2018-12-19T20:16:19.118Z,1545250579.118 [CBIT](DEBUG): Powering off loads.
2018-12-19T20:16:19.129Z,1545250579.129 [CBIT](DEBUG): Disabling WDT.
2018-12-19T20:16:19.141Z,1545250579.141 [CBIT](DEBUG): Opening all GF detection circuits.
2018-12-19T20:16:19.142Z,1545250579.142 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:19.191Z,1545250579.191 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:19.196Z,1545250579.196 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:19.479Z,1545250579.479 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-19T20:16:19.532Z,1545250579.532 [logger ThreadHandler](INFO): Thread cancelled.