2018-12-19T18:06:19.561Z,1545242779.561 [Supervisor](DEBUG): Initializing supervisor.
2018-12-19T18:06:19.573Z,1545242779.573 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-12-19T18:06:19.573Z,1545242779.573 [SyncHandler](INFO): Protected caller Thread ID is 800
2018-12-19T18:06:19.574Z,1545242779.574 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-12-19T18:06:19.585Z,1545242779.585 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-12-19T18:06:19.585Z,1545242779.585 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 801
2018-12-19T18:06:19.588Z,1545242779.588 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-12-19T18:06:19.610Z,1545242779.610 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-12-19T18:06:19.621Z,1545242779.621 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-12-19T18:06:19.621Z,1545242779.621 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 802
2018-12-19T18:06:19.622Z,1545242779.622 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-12-19T18:06:19.633Z,1545242779.633 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-12-19T18:06:19.633Z,1545242779.633 [logger ThreadHandler](INFO): Protected caller Thread ID is 803
2018-12-19T18:06:19.635Z,1545242779.635 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-12-19T18:06:19.635Z,1545242779.635 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-12-19T18:06:19.640Z,1545242779.640 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-12-19T18:06:19.835Z,1545242779.835 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-12-19T18:06:19.837Z,1545242779.837 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-12-19T18:06:20.007Z,1545242780.007 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-12-19T18:06:20.009Z,1545242780.009 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-12-19T18:06:20.367Z,1545242780.367 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-12-19T18:06:20.369Z,1545242780.369 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-12-19T18:06:21.063Z,1545242781.063 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-12-19T18:06:21.063Z,1545242781.063 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-12-19T18:06:21.516Z,1545242781.516 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-12-19T18:06:21.517Z,1545242781.517 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-12-19T18:06:21.955Z,1545242781.955 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-12-19T18:06:21.957Z,1545242781.957 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-12-19T18:06:22.559Z,1545242782.559 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-12-19T18:06:22.560Z,1545242782.560 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-12-19T18:06:23.003Z,1545242783.003 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-12-19T18:06:23.005Z,1545242783.005 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-12-19T18:06:23.087Z,1545242783.087 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-12-19T18:06:23.391Z,1545242783.391 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-12-19T18:06:23.393Z,1545242783.393 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-12-19T18:06:23.538Z,1545242783.538 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-12-19T18:06:23.538Z,1545242783.538 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-12-19T18:06:23.751Z,1545242783.751 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-12-19T18:06:23.752Z,1545242783.752 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-12-19T18:06:23.952Z,1545242783.952 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-12-19T18:06:23.952Z,1545242783.952 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-12-19T18:06:24.049Z,1545242784.049 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-12-19T18:06:24.050Z,1545242784.050 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-12-19T18:06:24.191Z,1545242784.191 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-12-19T18:06:24.194Z,1545242784.194 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-makai/
2018-12-19T18:06:24.196Z,1545242784.196 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Battery.cfg
2018-12-19T18:06:24.423Z,1545242784.423 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2018-12-19T18:06:24.425Z,1545242784.425 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/logger.cfg
2018-12-19T18:06:24.528Z,1545242784.528 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Science.cfg
2018-12-19T18:06:24.677Z,1545242784.677 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Control.cfg
2018-12-19T18:06:24.769Z,1545242784.769 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Simulator.cfg
2018-12-19T18:06:24.854Z,1545242784.854 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Sensor.cfg
2018-12-19T18:06:25.009Z,1545242785.009 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/vehicle.cfg
2018-12-19T18:06:25.208Z,1545242785.208 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Servo.cfg
2018-12-19T18:06:25.306Z,1545242785.306 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Navigation.cfg
2018-12-19T18:06:25.400Z,1545242785.400 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/BIT.cfg
2018-12-19T18:06:25.497Z,1545242785.497 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/secure.cfg
2018-12-19T18:06:25.580Z,1545242785.580 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2018-12-19T18:06:25.590Z,1545242785.590 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-12-19T18:06:25.791Z,1545242785.791 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-12-19T18:06:25.791Z,1545242785.791 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-12-19T18:06:25.815Z,1545242785.815 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-12-19T18:06:25.816Z,1545242785.816 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-12-19T18:06:25.874Z,1545242785.874 [DepthRateCalculator] Loaded
2018-12-19T18:06:25.874Z,1545242785.874 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-12-19T18:06:25.880Z,1545242785.880 [PitchRateCalculator] Loaded
2018-12-19T18:06:25.880Z,1545242785.880 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-12-19T18:06:25.895Z,1545242785.895 [SpeedCalculator] Loaded
2018-12-19T18:06:25.895Z,1545242785.895 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-12-19T18:06:25.915Z,1545242785.915 [TempGradientCalculator] Loaded
2018-12-19T18:06:25.916Z,1545242785.916 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-12-19T18:06:25.921Z,1545242785.921 [YawRateCalculator] Loaded
2018-12-19T18:06:25.922Z,1545242785.922 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-12-19T18:06:25.960Z,1545242785.960 [ElevatorOffsetCalculator] Loaded
2018-12-19T18:06:25.960Z,1545242785.960 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-12-19T18:06:25.961Z,1545242785.961 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-12-19T18:06:25.961Z,1545242785.961 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-12-19T18:06:26.002Z,1545242786.002 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-12-19T18:06:26.002Z,1545242786.002 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-12-19T18:06:26.176Z,1545242786.176 [Module Loader](ERROR): Cannot load library: libboost_system.so.1.63.0: cannot open shared object file: No such file or directory
2018-12-19T18:06:26.176Z,1545242786.176 [Module Loader](ERROR): Could not load the module at Modules/Sensor.so
2018-12-19T18:06:26.178Z,1545242786.178 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-12-19T18:06:26.336Z,1545242786.336 [SBIT](DEBUG): Construct Startup Built In Test.
2018-12-19T18:06:26.361Z,1545242786.361 [SBIT] Loaded
2018-12-19T18:06:26.361Z,1545242786.361 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-12-19T18:06:26.362Z,1545242786.362 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-12-19T18:06:26.389Z,1545242786.389 [IBIT] Loaded
2018-12-19T18:06:26.390Z,1545242786.390 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-12-19T18:06:26.393Z,1545242786.393 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-12-19T18:06:26.768Z,1545242786.768 [CBIT] Loaded
2018-12-19T18:06:26.769Z,1545242786.769 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-12-19T18:06:26.769Z,1545242786.769 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-12-19T18:06:26.770Z,1545242786.770 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-12-19T18:06:27.084Z,1545242787.084 [CTD_Seabird] Loaded
2018-12-19T18:06:27.084Z,1545242787.084 [ComponentRegistry](DEBUG): Component "CTD_Seabird" handled in its own thread.
2018-12-19T18:06:27.085Z,1545242787.085 [CTD_Seabird ThreadHandler](DEBUG): Created PCaller Thread at 4064D4E0
2018-12-19T18:06:27.086Z,1545242787.086 [CTD_Seabird ThreadHandler](INFO): Protected caller Thread ID is 883
2018-12-19T18:06:27.103Z,1545242787.103 [ESPComponent] Loaded
2018-12-19T18:06:27.103Z,1545242787.103 [ComponentRegistry](DEBUG): SyncComponent "ESPComponent" handled in the control thread.
2018-12-19T18:06:27.116Z,1545242787.116 [PAR_Licor] Loaded
2018-12-19T18:06:27.116Z,1545242787.116 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-12-19T18:06:27.163Z,1545242787.163 [WetLabsBB2FL] Loaded
2018-12-19T18:06:27.163Z,1545242787.163 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-12-19T18:06:27.164Z,1545242787.164 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 4067D4E0
2018-12-19T18:06:27.164Z,1545242787.164 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 884
2018-12-19T18:06:27.165Z,1545242787.165 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-12-19T18:06:27.166Z,1545242787.166 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-12-19T18:06:27.855Z,1545242787.855 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-12-19T18:06:27.855Z,1545242787.855 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-12-19T18:06:27.941Z,1545242787.941 [VerticalControl](DEBUG): Construct VerticalControl.
2018-12-19T18:06:28.031Z,1545242788.031 [VerticalControl] Loaded
2018-12-19T18:06:28.031Z,1545242788.031 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-12-19T18:06:28.032Z,1545242788.032 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-12-19T18:06:28.091Z,1545242788.091 [HorizontalControl] Loaded
2018-12-19T18:06:28.091Z,1545242788.091 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-12-19T18:06:28.092Z,1545242788.092 [SpeedControl](DEBUG): Construct SpeedControl.
2018-12-19T18:06:28.097Z,1545242788.097 [SpeedControl] Loaded
2018-12-19T18:06:28.097Z,1545242788.097 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-12-19T18:06:28.098Z,1545242788.098 [LoopControl](DEBUG): Construct LoopControl.
2018-12-19T18:06:28.098Z,1545242788.098 [LoopControl] Loaded
2018-12-19T18:06:28.098Z,1545242788.098 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-12-19T18:06:28.099Z,1545242788.099 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-12-19T18:06:28.100Z,1545242788.100 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-12-19T18:06:28.201Z,1545242788.201 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-12-19T18:06:28.202Z,1545242788.202 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-12-19T18:06:28.317Z,1545242788.317 [BuoyancyServo] Loaded
2018-12-19T18:06:28.317Z,1545242788.317 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-12-19T18:06:28.328Z,1545242788.328 [ElevatorServo] Loaded
2018-12-19T18:06:28.328Z,1545242788.328 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-12-19T18:06:28.339Z,1545242788.339 [MassServo] Loaded
2018-12-19T18:06:28.339Z,1545242788.339 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-12-19T18:06:28.350Z,1545242788.350 [RudderServo] Loaded
2018-12-19T18:06:28.350Z,1545242788.350 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-12-19T18:06:28.360Z,1545242788.360 [ThrusterServo] Loaded
2018-12-19T18:06:28.361Z,1545242788.361 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-12-19T18:06:28.361Z,1545242788.361 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-12-19T18:06:28.362Z,1545242788.362 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-12-19T18:06:28.473Z,1545242788.473 [DeadReckonUsingSpeedCalculator] Loaded
2018-12-19T18:06:28.473Z,1545242788.473 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-12-19T18:06:28.489Z,1545242788.489 [NavChart] Loaded
2018-12-19T18:06:28.489Z,1545242788.489 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-12-19T18:06:28.493Z,1545242788.493 [UniversalFixResidualReporter] Loaded
2018-12-19T18:06:28.493Z,1545242788.493 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-12-19T18:06:28.494Z,1545242788.494 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-12-19T18:06:28.497Z,1545242788.497 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-12-19T18:06:28.498Z,1545242788.498 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-12-19T18:06:28.504Z,1545242788.504 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-12-19T18:06:28.505Z,1545242788.505 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 407D74E0
2018-12-19T18:06:28.506Z,1545242788.506 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 885
2018-12-19T18:06:28.510Z,1545242788.510 [Supervisor](INFO): Main Thread ID is 796
2018-12-19T18:06:28.510Z,1545242788.510 [Supervisor](DEBUG): Running supervisor.
2018-12-19T18:06:28.511Z,1545242788.511 [CommandLine ThreadHandler](INFO): Handler Thread ID is 886
2018-12-19T18:06:28.518Z,1545242788.518 [CommandLine](IMPORTANT): got command quit
2018-12-19T18:06:28.523Z,1545242788.523 [controlThread ThreadHandler](INFO): Handler Thread ID is 887
2018-12-19T18:06:28.523Z,1545242788.523 [controlThread](DEBUG): Initializing ControlThread
2018-12-19T18:06:28.524Z,1545242788.524 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-12-19T18:06:28.524Z,1545242788.524 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-12-19T18:06:28.525Z,1545242788.525 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-12-19T18:06:28.525Z,1545242788.525 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-12-19T18:06:28.526Z,1545242788.526 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-12-19T18:06:28.526Z,1545242788.526 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-12-19T18:06:28.526Z,1545242788.526 [SBIT](INFO): Initialize SBIT Component.
2018-12-19T18:06:28.527Z,1545242788.527 [SBIT](IMPORTANT): git: 2018-12-13
2018-12-19T18:06:28.527Z,1545242788.527 [SBIT](INFO): git hash: 8200dc43e6ef01082c531ff0fab84136a371dc2d
2018-12-19T18:06:28.527Z,1545242788.527 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2018-12-19T18:06:28.529Z,1545242788.529 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #2 PREEMPT Thu Jan 11 20:13:48 PST 2018
Kernel Reported: #1 PREEMPT Tue Dec 18 21:19:28 PST 2018
2018-12-19T18:06:28.530Z,1545242788.530 [SBIT](INFO): Beginning SBIT in 24.000000 seconds.
2018-12-19T18:06:28.530Z,1545242788.530 [IBIT](INFO): Initialize IBIT Component.
2018-12-19T18:06:28.531Z,1545242788.531 [CBIT](DEBUG): Initialize CBIT Component.
2018-12-19T18:06:28.532Z,1545242788.532 [logger ThreadHandler](INFO): Handler Thread ID is 888
2018-12-19T18:06:28.545Z,1545242788.545 [CBIT](DEBUG): Initialized mux pins.
2018-12-19T18:06:28.545Z,1545242788.545 [CBIT](DEBUG): Initializing the watchdog timer.
2018-12-19T18:06:28.553Z,1545242788.553 [CTD_Seabird ThreadHandler](INFO): Handler Thread ID is 889
2018-12-19T18:06:28.554Z,1545242788.554 [CTD_Seabird](DEBUG): Initializing CTD_Seabird.
2018-12-19T18:06:28.557Z,1545242788.557 [CTD_Seabird](INFO): Opening uart, block timeout 10ths=20
2018-12-19T18:06:28.559Z,1545242788.559 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 891
2018-12-19T18:06:28.560Z,1545242788.560 [WetLabsBB2FL](INFO): Powering down
2018-12-19T18:06:28.573Z,1545242788.573 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-12-19T18:06:28.573Z,1545242788.573 [CBIT](DEBUG): Initializing heartbeat.
2018-12-19T18:06:28.614Z,1545242788.614 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 892
2018-12-19T18:06:28.621Z,1545242788.621 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-12-19T18:06:28.621Z,1545242788.621 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2018-12-19T18:06:28.621Z,1545242788.621 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-12-19T18:06:28.621Z,1545242788.621 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2018-12-19T18:06:28.622Z,1545242788.622 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-12-19T18:06:28.622Z,1545242788.622 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2018-12-19T18:06:28.622Z,1545242788.622 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-12-19T18:06:28.622Z,1545242788.622 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2018-12-19T18:06:28.622Z,1545242788.622 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-12-19T18:06:28.622Z,1545242788.622 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2018-12-19T18:06:28.623Z,1545242788.623 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-12-19T18:06:28.623Z,1545242788.623 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2018-12-19T18:06:28.623Z,1545242788.623 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-12-19T18:06:28.623Z,1545242788.623 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2018-12-19T18:06:28.623Z,1545242788.623 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-12-19T18:06:28.623Z,1545242788.623 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2018-12-19T18:06:28.645Z,1545242788.645 [CBIT](DEBUG): Deactivating GF circuits.
2018-12-19T18:06:28.645Z,1545242788.645 [CBIT](DEBUG): Deactivating emergency mode.
2018-12-19T18:06:28.685Z,1545242788.685 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-12-19T18:06:28.687Z,1545242788.687 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-12-19T18:06:28.687Z,1545242788.687 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-12-19T18:06:28.688Z,1545242788.688 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-12-19T18:06:28.689Z,1545242788.689 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-19T18:06:28.690Z,1545242788.690 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-19T18:06:28.690Z,1545242788.690 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-19T18:06:28.691Z,1545242788.691 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-12-19T18:06:28.691Z,1545242788.691 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-12-19T18:06:28.692Z,1545242788.692 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-12-19T18:06:28.738Z,1545242788.738 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-19T18:06:28.765Z,1545242788.765 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-12-19T18:06:28.765Z,1545242788.765 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-12-19T18:06:28.897Z,1545242788.897 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-12-19T18:06:28.898Z,1545242788.898 [Default:A.Wait](DEBUG): Construct Wait.
2018-12-19T18:06:28.900Z,1545242788.900 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-19T18:06:28.931Z,1545242788.931 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-12-19T18:06:28.970Z,1545242788.970 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-12-19T18:06:28.975Z,1545242788.975 [Default:E.Execute](DEBUG): Construct Execute.
2018-12-19T18:06:28.997Z,1545242788.997 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-12-19T18:06:29.012Z,1545242789.012 [controlThread](DEBUG): Component order: CycleStarter,ESPComponent,PAR_Licor,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,YawRateCalculator,ElevatorOffsetCalculator,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-12-19T18:06:29.056Z,1545242789.056 [ESPComponent](INFO): powering down ESP
2018-12-19T18:06:29.453Z,1545242789.453 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:29.525Z,1545242789.525 [Supervisor](INFO): Stop Mission called by Supervisor::terminate
2018-12-19T18:06:29.528Z,1545242789.528 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T18:06:29.529Z,1545242789.529 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:29.685Z,1545242789.685 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2018-12-19T18:06:29.685Z,1545242789.685 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:29.737Z,1545242789.737 [CommandLine](INFO): Join timeout helper Thread ID is 894
2018-12-19T18:06:29.749Z,1545242789.749 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2018-12-19T18:06:29.749Z,1545242789.749 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:29.749Z,1545242789.749 [NavChartDb](INFO): Join timeout helper Thread ID is 895
2018-12-19T18:06:30.061Z,1545242790.061 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-12-19T18:06:30.073Z,1545242790.073 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-12-19T18:06:30.103Z,1545242790.103 [ElevatorServo](DEBUG): Initializing EZServoServo.
2018-12-19T18:06:30.113Z,1545242790.113 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-12-19T18:06:30.126Z,1545242790.126 [MassServo](DEBUG): Initializing EZServoServo.
2018-12-19T18:06:30.138Z,1545242790.138 [MassServo](DEBUG): Initializing MassServo.
2018-12-19T18:06:30.163Z,1545242790.163 [RudderServo](DEBUG): Initializing EZServoServo.
2018-12-19T18:06:30.173Z,1545242790.173 [RudderServo](DEBUG): Initializing RudderServo.
2018-12-19T18:06:30.194Z,1545242790.194 [ThrusterServo](DEBUG): Initializing EZServoServo.
2018-12-19T18:06:30.201Z,1545242790.201 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-12-19T18:06:30.425Z,1545242790.425 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:30.685Z,1545242790.685 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:31.029Z,1545242791.029 [BuoyancyServo](ERROR): Buoyancy initialization uart error serial timeout
2018-12-19T18:06:31.029Z,1545242791.029 [BuoyancyServo](FAULT): Buoyancy failed to initialize
2018-12-19T18:06:31.029Z,1545242791.029 [BuoyancyServo] Communications Fault, FailCount= 1
2018-12-19T18:06:31.029Z,1545242791.029 [BuoyancyServo](ERROR): Communications Fault
2018-12-19T18:06:31.236Z,1545242791.236 [CBIT](ERROR): Communications Fault in component: BuoyancyServo
2018-12-19T18:06:31.261Z,1545242791.261 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:31.649Z,1545242791.649 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:32.049Z,1545242792.049 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:32.449Z,1545242792.449 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:32.861Z,1545242792.861 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:33.249Z,1545242793.249 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:33.267Z,1545242793.267 [CBIT](INFO): Clearing failed state for component BuoyancyServo
2018-12-19T18:06:33.267Z,1545242793.267 [BuoyancyServo] No Fault, FailCount= 1
2018-12-19T18:06:33.653Z,1545242793.653 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:34.077Z,1545242794.077 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:34.482Z,1545242794.482 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:34.881Z,1545242794.881 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:35.281Z,1545242795.281 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:35.310Z,1545242795.310 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-12-19T18:06:35.430Z,1545242795.430 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-12-19T18:06:35.681Z,1545242795.681 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:36.081Z,1545242796.081 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:36.349Z,1545242796.349 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T18:06:36.349Z,1545242796.349 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:36.369Z,1545242796.369 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2018-12-19T18:06:36.369Z,1545242796.369 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:36.369Z,1545242796.369 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 902
2018-12-19T18:06:36.481Z,1545242796.481 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:36.705Z,1545242796.705 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T18:06:36.705Z,1545242796.705 [WetLabsBB2FL](INFO): Powering down
2018-12-19T18:06:36.706Z,1545242796.706 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:36.721Z,1545242796.721 [ComponentRegistry](INFO): Shutting down CTD_Seabird ThreadHandler
2018-12-19T18:06:36.721Z,1545242796.721 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:36.721Z,1545242796.721 [CTD_Seabird](INFO): Join timeout helper Thread ID is 903
2018-12-19T18:06:36.877Z,1545242796.877 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:37.277Z,1545242797.277 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:37.577Z,1545242797.577 [CTD_Seabird ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T18:06:37.577Z,1545242797.577 [CTD_Seabird](INFO): Powering down
2018-12-19T18:06:37.681Z,1545242797.681 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-19T18:06:37.725Z,1545242797.725 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:37.733Z,1545242797.733 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2018-12-19T18:06:37.733Z,1545242797.733 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:37.733Z,1545242797.733 [logger](INFO): Join timeout helper Thread ID is 904
2018-12-19T18:06:37.752Z,1545242797.752 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T18:06:37.752Z,1545242797.752 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:37.770Z,1545242797.770 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2018-12-19T18:06:37.770Z,1545242797.770 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:37.770Z,1545242797.770 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2018-12-19T18:06:37.770Z,1545242797.770 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:37.770Z,1545242797.770 [controlThread](INFO): Join timeout helper Thread ID is 905
2018-12-19T18:06:38.069Z,1545242798.069 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T18:06:38.069Z,1545242798.069 [controlThread](DEBUG): Uninitializing ControlThread
2018-12-19T18:06:38.071Z,1545242798.071 [DepthRateCalculator](DEBUG): Uninitializing DepthRateCalculator.
2018-12-19T18:06:38.072Z,1545242798.072 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2018-12-19T18:06:38.073Z,1545242798.073 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2018-12-19T18:06:38.073Z,1545242798.073 [MissionManager](INFO): Uninitializing Mission Default
2018-12-19T18:06:38.076Z,1545242798.076 [MissionManager](INFO): Uninitializing Mission Startup
2018-12-19T18:06:38.077Z,1545242798.077 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2018-12-19T18:06:38.077Z,1545242798.077 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2018-12-19T18:06:38.077Z,1545242798.077 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2018-12-19T18:06:38.078Z,1545242798.078 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2018-12-19T18:06:38.078Z,1545242798.078 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-12-19T18:06:38.078Z,1545242798.078 [BuoyancyServo](INFO): Powering down
2018-12-19T18:06:38.229Z,1545242798.229 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2018-12-19T18:06:38.229Z,1545242798.229 [ElevatorServo](INFO): Powering down
2018-12-19T18:06:38.246Z,1545242798.246 [MassServo](DEBUG): Uninitialize Mass Servo.
2018-12-19T18:06:38.246Z,1545242798.246 [MassServo](INFO): Powering down
2018-12-19T18:06:38.263Z,1545242798.263 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2018-12-19T18:06:38.264Z,1545242798.264 [RudderServo](INFO): Powering down
2018-12-19T18:06:38.264Z,1545242798.264 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2018-12-19T18:06:38.265Z,1545242798.265 [ThrusterServo](INFO): Powering down
2018-12-19T18:06:38.265Z,1545242798.265 [SBIT](DEBUG): Uninitialize SBIT Component.
2018-12-19T18:06:38.266Z,1545242798.266 [IBIT](DEBUG): Uninitialize IBIT Component.
2018-12-19T18:06:38.266Z,1545242798.266 [CBIT](DEBUG): Uninitialize CBIT Component.
2018-12-19T18:06:38.266Z,1545242798.266 [CBIT](DEBUG): Powering off loads.
2018-12-19T18:06:38.277Z,1545242798.277 [CBIT](DEBUG): Disabling WDT.
2018-12-19T18:06:38.289Z,1545242798.289 [CBIT](DEBUG): Opening all GF detection circuits.
2018-12-19T18:06:38.289Z,1545242798.289 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:38.327Z,1545242798.327 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:38.332Z,1545242798.332 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:38.615Z,1545242798.615 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-19T18:06:38.669Z,1545242798.669 [logger ThreadHandler](INFO): Thread cancelled.