2018-12-19T17:51:19.315Z,1545241879.315 [Supervisor](DEBUG): Initializing supervisor.
2018-12-19T17:51:19.318Z,1545241879.318 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-12-19T17:51:19.319Z,1545241879.319 [SyncHandler](INFO): Protected caller Thread ID is 806
2018-12-19T17:51:19.319Z,1545241879.319 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-12-19T17:51:19.320Z,1545241879.320 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-12-19T17:51:19.321Z,1545241879.321 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 807
2018-12-19T17:51:19.325Z,1545241879.325 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-12-19T17:51:19.336Z,1545241879.336 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-12-19T17:51:19.337Z,1545241879.337 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-12-19T17:51:19.338Z,1545241879.338 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 808
2018-12-19T17:51:19.340Z,1545241879.340 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-12-19T17:51:19.342Z,1545241879.342 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-12-19T17:51:19.342Z,1545241879.342 [logger ThreadHandler](INFO): Protected caller Thread ID is 809
2018-12-19T17:51:19.344Z,1545241879.344 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-12-19T17:51:19.345Z,1545241879.345 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-12-19T17:51:19.349Z,1545241879.349 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-12-19T17:51:19.480Z,1545241879.480 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-12-19T17:51:19.482Z,1545241879.482 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-12-19T17:51:19.608Z,1545241879.608 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-12-19T17:51:19.610Z,1545241879.610 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-12-19T17:51:19.827Z,1545241879.827 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-12-19T17:51:19.828Z,1545241879.828 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-12-19T17:51:20.239Z,1545241880.239 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-12-19T17:51:20.240Z,1545241880.240 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-12-19T17:51:20.604Z,1545241880.604 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-12-19T17:51:20.605Z,1545241880.605 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-12-19T17:51:21.103Z,1545241881.103 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-12-19T17:51:21.105Z,1545241881.105 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-12-19T17:51:21.664Z,1545241881.664 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-12-19T17:51:21.664Z,1545241881.664 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-12-19T17:51:22.366Z,1545241882.366 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-12-19T17:51:22.368Z,1545241882.368 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-12-19T17:51:22.514Z,1545241882.514 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-12-19T17:51:22.865Z,1545241882.865 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-12-19T17:51:22.867Z,1545241882.867 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-12-19T17:51:23.034Z,1545241883.034 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-12-19T17:51:23.035Z,1545241883.035 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-12-19T17:51:23.307Z,1545241883.307 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-12-19T17:51:23.307Z,1545241883.307 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-12-19T17:51:23.548Z,1545241883.548 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-12-19T17:51:23.549Z,1545241883.549 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-12-19T17:51:23.654Z,1545241883.654 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-12-19T17:51:23.655Z,1545241883.655 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-12-19T17:51:23.831Z,1545241883.831 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-12-19T17:51:23.833Z,1545241883.833 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-INSERTREALNAME/
2018-12-19T17:51:23.833Z,1545241883.833 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2018-12-19T17:51:23.843Z,1545241883.843 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-12-19T17:51:24.074Z,1545241884.074 [InternalSim] Loaded
2018-12-19T17:51:24.074Z,1545241884.074 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2018-12-19T17:51:24.074Z,1545241884.074 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-12-19T17:51:24.075Z,1545241884.075 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-12-19T17:51:24.099Z,1545241884.099 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-12-19T17:51:24.100Z,1545241884.100 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-12-19T17:51:24.168Z,1545241884.168 [DepthRateCalculator] Loaded
2018-12-19T17:51:24.168Z,1545241884.168 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-12-19T17:51:24.173Z,1545241884.173 [PitchRateCalculator] Loaded
2018-12-19T17:51:24.173Z,1545241884.173 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-12-19T17:51:24.198Z,1545241884.198 [SpeedCalculator] Loaded
2018-12-19T17:51:24.198Z,1545241884.198 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-12-19T17:51:24.218Z,1545241884.218 [TempGradientCalculator] Loaded
2018-12-19T17:51:24.219Z,1545241884.219 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-12-19T17:51:24.224Z,1545241884.224 [YawRateCalculator] Loaded
2018-12-19T17:51:24.224Z,1545241884.224 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-12-19T17:51:24.275Z,1545241884.275 [ElevatorOffsetCalculator] Loaded
2018-12-19T17:51:24.275Z,1545241884.275 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-12-19T17:51:24.275Z,1545241884.275 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-12-19T17:51:24.276Z,1545241884.276 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-12-19T17:51:24.321Z,1545241884.321 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-12-19T17:51:24.322Z,1545241884.322 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-12-19T17:51:24.559Z,1545241884.559 [Module Loader](ERROR): Cannot load library: libboost_system.so.1.63.0: cannot open shared object file: No such file or directory
2018-12-19T17:51:24.559Z,1545241884.559 [Module Loader](ERROR): Could not load the module at Modules/Sensor.so
2018-12-19T17:51:24.561Z,1545241884.561 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-12-19T17:51:24.739Z,1545241884.739 [SBIT](DEBUG): Construct Startup Built In Test.
2018-12-19T17:51:24.787Z,1545241884.787 [SBIT] Loaded
2018-12-19T17:51:24.787Z,1545241884.787 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-12-19T17:51:24.788Z,1545241884.787 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-12-19T17:51:24.813Z,1545241884.813 [IBIT] Loaded
2018-12-19T17:51:24.814Z,1545241884.814 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-12-19T17:51:24.816Z,1545241884.816 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-12-19T17:51:25.241Z,1545241885.241 [CBIT] Loaded
2018-12-19T17:51:25.241Z,1545241885.241 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-12-19T17:51:25.241Z,1545241885.241 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-12-19T17:51:25.243Z,1545241885.243 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-12-19T17:51:25.585Z,1545241885.585 [CTD_NeilBrown] Loaded
2018-12-19T17:51:25.586Z,1545241885.586 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2018-12-19T17:51:25.587Z,1545241885.587 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4064D4E0
2018-12-19T17:51:25.588Z,1545241885.588 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 855
2018-12-19T17:51:25.603Z,1545241885.603 [PAR_Licor] Loaded
2018-12-19T17:51:25.603Z,1545241885.603 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-12-19T17:51:25.653Z,1545241885.653 [WetLabsBB2FL] Loaded
2018-12-19T17:51:25.653Z,1545241885.653 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-12-19T17:51:25.655Z,1545241885.655 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 4067D4E0
2018-12-19T17:51:25.655Z,1545241885.655 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 856
2018-12-19T17:51:25.657Z,1545241885.657 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-12-19T17:51:25.658Z,1545241885.658 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-12-19T17:51:25.986Z,1545241885.986 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-12-19T17:51:25.987Z,1545241885.987 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-12-19T17:51:26.082Z,1545241886.082 [VerticalControl](DEBUG): Construct VerticalControl.
2018-12-19T17:51:26.172Z,1545241886.172 [VerticalControl] Loaded
2018-12-19T17:51:26.172Z,1545241886.172 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-12-19T17:51:26.173Z,1545241886.173 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-12-19T17:51:26.239Z,1545241886.239 [HorizontalControl] Loaded
2018-12-19T17:51:26.240Z,1545241886.240 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-12-19T17:51:26.240Z,1545241886.240 [SpeedControl](DEBUG): Construct SpeedControl.
2018-12-19T17:51:26.242Z,1545241886.242 [SpeedControl] Loaded
2018-12-19T17:51:26.242Z,1545241886.242 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-12-19T17:51:26.243Z,1545241886.243 [BackSeatDriver](DEBUG): Construct BackSeatDriver.
2018-12-19T17:51:26.245Z,1545241886.245 [BackSeatDriver] Loaded
2018-12-19T17:51:26.245Z,1545241886.245 [ComponentRegistry](DEBUG): SyncComponent "BackSeatDriver" handled in the control thread.
2018-12-19T17:51:26.246Z,1545241886.246 [LoopControl](DEBUG): Construct LoopControl.
2018-12-19T17:51:26.246Z,1545241886.246 [LoopControl] Loaded
2018-12-19T17:51:26.246Z,1545241886.246 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-12-19T17:51:26.247Z,1545241886.247 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-12-19T17:51:26.248Z,1545241886.248 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-12-19T17:51:26.353Z,1545241886.353 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-12-19T17:51:26.354Z,1545241886.354 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-12-19T17:51:26.479Z,1545241886.479 [BuoyancyServo] Loaded
2018-12-19T17:51:26.479Z,1545241886.479 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-12-19T17:51:26.490Z,1545241886.490 [ElevatorServo] Loaded
2018-12-19T17:51:26.490Z,1545241886.490 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-12-19T17:51:26.501Z,1545241886.500 [MassServo] Loaded
2018-12-19T17:51:26.501Z,1545241886.501 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-12-19T17:51:26.514Z,1545241886.514 [RudderServo] Loaded
2018-12-19T17:51:26.514Z,1545241886.514 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-12-19T17:51:26.525Z,1545241886.525 [ThrusterServo] Loaded
2018-12-19T17:51:26.525Z,1545241886.525 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-12-19T17:51:26.526Z,1545241886.526 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-12-19T17:51:26.526Z,1545241886.526 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-12-19T17:51:26.653Z,1545241886.653 [DeadReckonUsingMultipleVelocitySources] Loaded
2018-12-19T17:51:26.653Z,1545241886.653 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2018-12-19T17:51:26.714Z,1545241886.714 [DeadReckonUsingSpeedCalculator] Loaded
2018-12-19T17:51:26.714Z,1545241886.714 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-12-19T17:51:26.733Z,1545241886.733 [NavChart] Loaded
2018-12-19T17:51:26.733Z,1545241886.733 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-12-19T17:51:26.737Z,1545241886.737 [UniversalFixResidualReporter] Loaded
2018-12-19T17:51:26.737Z,1545241886.737 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-12-19T17:51:26.738Z,1545241886.738 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-12-19T17:51:26.741Z,1545241886.741 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-12-19T17:51:26.742Z,1545241886.742 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-12-19T17:51:26.748Z,1545241886.748 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-12-19T17:51:26.750Z,1545241886.750 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 407D74E0
2018-12-19T17:51:26.751Z,1545241886.751 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 857
2018-12-19T17:51:26.757Z,1545241886.757 [Supervisor](INFO): Main Thread ID is 802
2018-12-19T17:51:26.757Z,1545241886.757 [Supervisor](DEBUG): Running supervisor.
2018-12-19T17:51:26.758Z,1545241886.758 [CommandLine ThreadHandler](INFO): Handler Thread ID is 858
2018-12-19T17:51:26.761Z,1545241886.761 [controlThread ThreadHandler](INFO): Handler Thread ID is 859
2018-12-19T17:51:26.762Z,1545241886.762 [controlThread](DEBUG): Initializing ControlThread
2018-12-19T17:51:26.763Z,1545241886.763 [InternalSim](DEBUG):  InternalSim initializing...
2018-12-19T17:51:26.769Z,1545241886.769 [InternalSim](DEBUG): oceanModelVarCount=0
2018-12-19T17:51:26.839Z,1545241886.839 [logger ThreadHandler](INFO): Handler Thread ID is 860
2018-12-19T17:51:26.911Z,1545241886.911 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 861
2018-12-19T17:51:26.922Z,1545241886.922 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-12-19T17:51:26.922Z,1545241886.922 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-12-19T17:51:26.923Z,1545241886.923 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-12-19T17:51:26.923Z,1545241886.923 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-12-19T17:51:26.923Z,1545241886.923 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-12-19T17:51:26.924Z,1545241886.924 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-12-19T17:51:26.924Z,1545241886.924 [SBIT](INFO): Initialize SBIT Component.
2018-12-19T17:51:26.925Z,1545241886.925 [SBIT](IMPORTANT): git: 2018-12-13
2018-12-19T17:51:26.925Z,1545241886.925 [SBIT](INFO): git hash: 8200dc43e6ef01082c531ff0fab84136a371dc2d
2018-12-19T17:51:26.926Z,1545241886.926 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2018-12-19T17:51:26.927Z,1545241886.927 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #1 PREEMPT Tue Dec 18 21:19:28 PST 2018
2018-12-19T17:51:26.928Z,1545241886.928 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2018-12-19T17:51:26.929Z,1545241886.929 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 862
2018-12-19T17:51:26.934Z,1545241886.934 [IBIT](INFO): Initialize IBIT Component.
2018-12-19T17:51:26.935Z,1545241886.935 [CBIT](DEBUG): Initialize CBIT Component.
2018-12-19T17:51:26.936Z,1545241886.936 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 863
2018-12-19T17:51:26.946Z,1545241886.946 [CBIT](DEBUG): Initialized mux pins.
2018-12-19T17:51:26.946Z,1545241886.946 [CBIT](DEBUG): Initializing the watchdog timer.
2018-12-19T17:51:26.956Z,1545241886.956 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-12-19T17:51:26.957Z,1545241886.957 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2018-12-19T17:51:26.957Z,1545241886.957 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-12-19T17:51:26.957Z,1545241886.957 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2018-12-19T17:51:26.957Z,1545241886.957 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-12-19T17:51:26.957Z,1545241886.957 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2018-12-19T17:51:26.957Z,1545241886.957 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-12-19T17:51:26.958Z,1545241886.958 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2018-12-19T17:51:26.958Z,1545241886.958 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-12-19T17:51:26.958Z,1545241886.958 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2018-12-19T17:51:26.959Z,1545241886.959 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-12-19T17:51:26.959Z,1545241886.959 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2018-12-19T17:51:26.959Z,1545241886.959 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-12-19T17:51:26.959Z,1545241886.959 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2018-12-19T17:51:26.959Z,1545241886.959 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-12-19T17:51:26.959Z,1545241886.959 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2018-12-19T17:51:26.970Z,1545241886.970 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-12-19T17:51:26.971Z,1545241886.971 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-12-19T17:51:26.973Z,1545241886.973 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-12-19T17:51:26.973Z,1545241886.973 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-12-19T17:51:26.974Z,1545241886.974 [BackSeatDriver](DEBUG): Initialize BackSeatDriver Component.
2018-12-19T17:51:27.119Z,1545241887.119 [CTD_NeilBrown](DEBUG): Initializing CTD_NeilBrown.
2018-12-19T17:51:27.695Z,1545241887.695 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-12-19T17:51:27.696Z,1545241887.696 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2018-12-19T17:51:27.697Z,1545241887.697 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2018-12-19T17:51:27.697Z,1545241887.697 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2018-12-19T17:51:27.698Z,1545241887.698 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-19T17:51:27.698Z,1545241887.698 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-19T17:51:27.698Z,1545241887.698 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-19T17:51:27.706Z,1545241887.706 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-12-19T17:51:27.707Z,1545241887.707 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-12-19T17:51:27.708Z,1545241887.708 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-12-19T17:51:27.878Z,1545241887.878 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-19T17:51:27.897Z,1545241887.897 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-12-19T17:51:27.897Z,1545241887.897 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-12-19T17:51:27.975Z,1545241887.975 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-12-19T17:51:27.976Z,1545241887.976 [Default:A.Wait](DEBUG): Construct Wait.
2018-12-19T17:51:27.977Z,1545241887.977 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-19T17:51:27.997Z,1545241887.997 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-12-19T17:51:28.028Z,1545241888.028 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-12-19T17:51:28.033Z,1545241888.033 [Default:E.Execute](DEBUG): Construct Execute.
2018-12-19T17:51:28.053Z,1545241888.053 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-12-19T17:51:28.058Z,1545241888.058 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,PAR_Licor,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,YawRateCalculator,ElevatorOffsetCalculator,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,BackSeatDriver,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-12-19T17:51:28.380Z,1545241888.380 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-12-19T17:51:28.395Z,1545241888.395 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-12-19T17:51:28.407Z,1545241888.407 [MassServo](DEBUG): Initializing MassServo.
2018-12-19T17:51:28.419Z,1545241888.419 [RudderServo](DEBUG): Initializing RudderServo.
2018-12-19T17:51:28.427Z,1545241888.427 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-12-19T17:51:34.259Z,1545241894.259 [CTD_NeilBrown](FAULT): Failed to acquire real or simulated CTD data within timeout.
2018-12-19T17:51:34.259Z,1545241894.259 [CTD_NeilBrown] Communications Fault, FailCount= 1
2018-12-19T17:51:34.259Z,1545241894.259 [CTD_NeilBrown](ERROR): Communications Fault
2018-12-19T17:51:34.560Z,1545241894.560 [CBIT](ERROR): Communications Fault in component: CTD_NeilBrown
2018-12-19T17:51:34.560Z,1545241894.560 [CBIT](FAULT): Communications Fault in component: CTD_NeilBrown
2018-12-19T17:51:47.358Z,1545241907.358 [SBIT](IMPORTANT): Beginning Startup BIT
2018-12-19T17:52:17.767Z,1545241937.767 [CommandLine](IMPORTANT): got command quit
2018-12-19T17:52:18.770Z,1545241938.770 [Supervisor](INFO): Stop Mission called by Supervisor::terminate
2018-12-19T17:52:18.773Z,1545241938.773 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T17:52:18.773Z,1545241938.773 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:18.842Z,1545241938.842 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2018-12-19T17:52:18.842Z,1545241938.842 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:18.843Z,1545241938.843 [CommandLine](INFO): Join timeout helper Thread ID is 866
2018-12-19T17:52:18.843Z,1545241938.843 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2018-12-19T17:52:18.844Z,1545241938.844 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:18.844Z,1545241938.844 [NavChartDb](INFO): Join timeout helper Thread ID is 867
2018-12-19T17:52:19.162Z,1545241939.162 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T17:52:19.163Z,1545241939.163 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.182Z,1545241939.182 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2018-12-19T17:52:19.182Z,1545241939.182 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.183Z,1545241939.183 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 868
2018-12-19T17:52:19.355Z,1545241939.355 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T17:52:19.355Z,1545241939.355 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.370Z,1545241939.370 [ComponentRegistry](INFO): Shutting down CTD_NeilBrown ThreadHandler
2018-12-19T17:52:19.370Z,1545241939.370 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.371Z,1545241939.371 [CTD_NeilBrown](INFO): Join timeout helper Thread ID is 869
2018-12-19T17:52:19.770Z,1545241939.770 [CTD_NeilBrown ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T17:52:19.771Z,1545241939.771 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.782Z,1545241939.782 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2018-12-19T17:52:19.782Z,1545241939.782 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.783Z,1545241939.783 [logger](INFO): Join timeout helper Thread ID is 870
2018-12-19T17:52:19.795Z,1545241939.795 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T17:52:19.795Z,1545241939.795 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.803Z,1545241939.803 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2018-12-19T17:52:19.803Z,1545241939.803 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.803Z,1545241939.803 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2018-12-19T17:52:19.804Z,1545241939.804 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.804Z,1545241939.804 [controlThread](INFO): Join timeout helper Thread ID is 871
2018-12-19T17:52:19.827Z,1545241939.827 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-19T17:52:19.827Z,1545241939.827 [controlThread](DEBUG): Uninitializing ControlThread
2018-12-19T17:52:19.829Z,1545241939.829 [DepthRateCalculator](DEBUG): Uninitializing DepthRateCalculator.
2018-12-19T17:52:19.830Z,1545241939.830 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2018-12-19T17:52:19.855Z,1545241939.855 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2018-12-19T17:52:19.856Z,1545241939.856 [MissionManager](INFO): Uninitializing Mission Default
2018-12-19T17:52:19.858Z,1545241939.858 [MissionManager](INFO): Uninitializing Mission Startup
2018-12-19T17:52:19.887Z,1545241939.887 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2018-12-19T17:52:19.887Z,1545241939.887 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2018-12-19T17:52:19.887Z,1545241939.887 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2018-12-19T17:52:19.898Z,1545241939.898 [BackSeatDriver](DEBUG): Uninitialize BackSeatDriver Component.
2018-12-19T17:52:19.899Z,1545241939.899 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2018-12-19T17:52:19.899Z,1545241939.899 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-12-19T17:52:19.900Z,1545241939.900 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2018-12-19T17:52:19.900Z,1545241939.900 [MassServo](DEBUG): Uninitialize Mass Servo.
2018-12-19T17:52:19.900Z,1545241939.900 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2018-12-19T17:52:19.900Z,1545241939.900 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2018-12-19T17:52:19.901Z,1545241939.901 [SBIT](DEBUG): Uninitialize SBIT Component.
2018-12-19T17:52:19.901Z,1545241939.901 [IBIT](DEBUG): Uninitialize IBIT Component.
2018-12-19T17:52:19.901Z,1545241939.901 [CBIT](DEBUG): Uninitialize CBIT Component.
2018-12-19T17:52:19.902Z,1545241939.902 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.945Z,1545241939.945 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.949Z,1545241939.949 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:19.989Z,1545241939.989 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-19T17:52:20.037Z,1545241940.037 [logger ThreadHandler](INFO): Thread cancelled.