2018-12-18T22:38:32.046Z,1545172712.046 [Supervisor](DEBUG): Initializing supervisor.
2018-12-18T22:38:32.049Z,1545172712.049 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-12-18T22:38:32.049Z,1545172712.049 [SyncHandler](INFO): Protected caller Thread ID is 810
2018-12-18T22:38:32.050Z,1545172712.050 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-12-18T22:38:32.051Z,1545172712.050 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-12-18T22:38:32.051Z,1545172712.051 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 811
2018-12-18T22:38:32.054Z,1545172712.054 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-12-18T22:38:32.065Z,1545172712.065 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-12-18T22:38:32.066Z,1545172712.066 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-12-18T22:38:32.066Z,1545172712.066 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 812
2018-12-18T22:38:32.067Z,1545172712.067 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-12-18T22:38:32.068Z,1545172712.068 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-12-18T22:38:32.068Z,1545172712.068 [logger ThreadHandler](INFO): Protected caller Thread ID is 813
2018-12-18T22:38:32.070Z,1545172712.070 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-12-18T22:38:32.071Z,1545172712.071 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-12-18T22:38:32.075Z,1545172712.075 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-12-18T22:38:32.172Z,1545172712.172 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-12-18T22:38:32.174Z,1545172712.174 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-12-18T22:38:32.275Z,1545172712.275 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-12-18T22:38:32.277Z,1545172712.277 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-12-18T22:38:32.471Z,1545172712.471 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-12-18T22:38:32.473Z,1545172712.473 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-12-18T22:38:32.831Z,1545172712.831 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-12-18T22:38:32.832Z,1545172712.832 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-12-18T22:38:33.156Z,1545172713.156 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-12-18T22:38:33.157Z,1545172713.157 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-12-18T22:38:33.604Z,1545172713.604 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-12-18T22:38:33.606Z,1545172713.606 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-12-18T22:38:34.088Z,1545172714.088 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-12-18T22:38:34.088Z,1545172714.088 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-12-18T22:38:34.539Z,1545172714.539 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-12-18T22:38:34.541Z,1545172714.541 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-12-18T22:38:34.623Z,1545172714.623 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-12-18T22:38:34.931Z,1545172714.931 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-12-18T22:38:34.933Z,1545172714.933 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-12-18T22:38:35.081Z,1545172715.081 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-12-18T22:38:35.082Z,1545172715.082 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-12-18T22:38:35.299Z,1545172715.299 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-12-18T22:38:35.300Z,1545172715.300 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-12-18T22:38:35.507Z,1545172715.507 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-12-18T22:38:35.508Z,1545172715.508 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-12-18T22:38:36.122Z,1545172716.122 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-12-18T22:38:36.122Z,1545172716.122 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-12-18T22:38:36.266Z,1545172716.266 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-12-18T22:38:36.268Z,1545172716.268 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-INSERTREALNAME/
2018-12-18T22:38:36.268Z,1545172716.268 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2018-12-18T22:38:36.272Z,1545172716.272 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-12-18T22:38:36.465Z,1545172716.465 [InternalSim] Loaded
2018-12-18T22:38:36.465Z,1545172716.465 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2018-12-18T22:38:36.466Z,1545172716.466 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-12-18T22:38:36.466Z,1545172716.466 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-12-18T22:38:36.490Z,1545172716.490 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-12-18T22:38:36.490Z,1545172716.490 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-12-18T22:38:36.544Z,1545172716.544 [DepthRateCalculator] Loaded
2018-12-18T22:38:36.544Z,1545172716.544 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-12-18T22:38:36.550Z,1545172716.550 [PitchRateCalculator] Loaded
2018-12-18T22:38:36.550Z,1545172716.550 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-12-18T22:38:36.565Z,1545172716.565 [SpeedCalculator] Loaded
2018-12-18T22:38:36.565Z,1545172716.565 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-12-18T22:38:36.585Z,1545172716.585 [TempGradientCalculator] Loaded
2018-12-18T22:38:36.585Z,1545172716.585 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-12-18T22:38:36.591Z,1545172716.591 [YawRateCalculator] Loaded
2018-12-18T22:38:36.591Z,1545172716.591 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-12-18T22:38:36.628Z,1545172716.628 [ElevatorOffsetCalculator] Loaded
2018-12-18T22:38:36.629Z,1545172716.629 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-12-18T22:38:36.629Z,1545172716.629 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-12-18T22:38:36.630Z,1545172716.630 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-12-18T22:38:36.670Z,1545172716.670 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-12-18T22:38:36.671Z,1545172716.671 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-12-18T22:38:36.844Z,1545172716.844 [Module Loader](ERROR): Cannot load library: libboost_system.so.1.63.0: cannot open shared object file: No such file or directory
2018-12-18T22:38:36.844Z,1545172716.844 [Module Loader](ERROR): Could not load the module at Modules/Sensor.so
2018-12-18T22:38:36.845Z,1545172716.845 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-12-18T22:38:37.003Z,1545172717.003 [SBIT](DEBUG): Construct Startup Built In Test.
2018-12-18T22:38:37.027Z,1545172717.027 [SBIT] Loaded
2018-12-18T22:38:37.027Z,1545172717.027 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-12-18T22:38:37.028Z,1545172717.028 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-12-18T22:38:37.054Z,1545172717.054 [IBIT] Loaded
2018-12-18T22:38:37.054Z,1545172717.054 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-12-18T22:38:37.057Z,1545172717.057 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-12-18T22:38:37.423Z,1545172717.423 [CBIT] Loaded
2018-12-18T22:38:37.423Z,1545172717.423 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-12-18T22:38:37.424Z,1545172717.424 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-12-18T22:38:37.424Z,1545172717.424 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-12-18T22:38:37.734Z,1545172717.734 [CTD_NeilBrown] Loaded
2018-12-18T22:38:37.734Z,1545172717.734 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2018-12-18T22:38:37.735Z,1545172717.735 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4064D4E0
2018-12-18T22:38:37.736Z,1545172717.736 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 859
2018-12-18T22:38:37.750Z,1545172717.750 [PAR_Licor] Loaded
2018-12-18T22:38:37.750Z,1545172717.750 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-12-18T22:38:37.796Z,1545172717.796 [WetLabsBB2FL] Loaded
2018-12-18T22:38:37.797Z,1545172717.797 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-12-18T22:38:37.798Z,1545172717.798 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 4067D4E0
2018-12-18T22:38:37.798Z,1545172717.798 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 860
2018-12-18T22:38:37.799Z,1545172717.799 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-12-18T22:38:37.799Z,1545172717.799 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-12-18T22:38:38.073Z,1545172718.073 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-12-18T22:38:38.074Z,1545172718.074 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-12-18T22:38:38.160Z,1545172718.160 [VerticalControl](DEBUG): Construct VerticalControl.
2018-12-18T22:38:38.246Z,1545172718.246 [VerticalControl] Loaded
2018-12-18T22:38:38.246Z,1545172718.246 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-12-18T22:38:38.247Z,1545172718.247 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-12-18T22:38:38.300Z,1545172718.300 [HorizontalControl] Loaded
2018-12-18T22:38:38.301Z,1545172718.301 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-12-18T22:38:38.301Z,1545172718.301 [SpeedControl](DEBUG): Construct SpeedControl.
2018-12-18T22:38:38.303Z,1545172718.303 [SpeedControl] Loaded
2018-12-18T22:38:38.303Z,1545172718.303 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-12-18T22:38:38.304Z,1545172718.304 [BackSeatDriver](DEBUG): Construct BackSeatDriver.
2018-12-18T22:38:38.306Z,1545172718.306 [BackSeatDriver] Loaded
2018-12-18T22:38:38.306Z,1545172718.306 [ComponentRegistry](DEBUG): SyncComponent "BackSeatDriver" handled in the control thread.
2018-12-18T22:38:38.307Z,1545172718.307 [LoopControl](DEBUG): Construct LoopControl.
2018-12-18T22:38:38.307Z,1545172718.307 [LoopControl] Loaded
2018-12-18T22:38:38.308Z,1545172718.308 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-12-18T22:38:38.308Z,1545172718.308 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-12-18T22:38:38.309Z,1545172718.309 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-12-18T22:38:38.410Z,1545172718.410 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-12-18T22:38:38.411Z,1545172718.411 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-12-18T22:38:38.525Z,1545172718.525 [BuoyancyServo] Loaded
2018-12-18T22:38:38.526Z,1545172718.526 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-12-18T22:38:38.537Z,1545172718.537 [ElevatorServo] Loaded
2018-12-18T22:38:38.537Z,1545172718.537 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-12-18T22:38:38.547Z,1545172718.547 [MassServo] Loaded
2018-12-18T22:38:38.548Z,1545172718.548 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-12-18T22:38:38.558Z,1545172718.558 [RudderServo] Loaded
2018-12-18T22:38:38.559Z,1545172718.559 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-12-18T22:38:38.569Z,1545172718.569 [ThrusterServo] Loaded
2018-12-18T22:38:38.569Z,1545172718.569 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-12-18T22:38:38.570Z,1545172718.570 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-12-18T22:38:38.570Z,1545172718.570 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-12-18T22:38:38.687Z,1545172718.687 [DeadReckonUsingMultipleVelocitySources] Loaded
2018-12-18T22:38:38.688Z,1545172718.688 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2018-12-18T22:38:38.745Z,1545172718.745 [DeadReckonUsingSpeedCalculator] Loaded
2018-12-18T22:38:38.746Z,1545172718.746 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-12-18T22:38:38.762Z,1545172718.762 [NavChart] Loaded
2018-12-18T22:38:38.762Z,1545172718.762 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-12-18T22:38:38.766Z,1545172718.766 [UniversalFixResidualReporter] Loaded
2018-12-18T22:38:38.766Z,1545172718.766 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-12-18T22:38:38.767Z,1545172718.767 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-12-18T22:38:38.770Z,1545172718.770 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-12-18T22:38:38.771Z,1545172718.771 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-12-18T22:38:38.777Z,1545172718.777 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-12-18T22:38:38.778Z,1545172718.778 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 407D74E0
2018-12-18T22:38:38.779Z,1545172718.779 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 861
2018-12-18T22:38:38.783Z,1545172718.783 [Supervisor](INFO): Main Thread ID is 806
2018-12-18T22:38:38.784Z,1545172718.784 [Supervisor](DEBUG): Running supervisor.
2018-12-18T22:38:38.784Z,1545172718.784 [CommandLine ThreadHandler](INFO): Handler Thread ID is 862
2018-12-18T22:38:38.787Z,1545172718.787 [controlThread ThreadHandler](INFO): Handler Thread ID is 863
2018-12-18T22:38:38.787Z,1545172718.787 [controlThread](DEBUG): Initializing ControlThread
2018-12-18T22:38:38.788Z,1545172718.788 [InternalSim](DEBUG):  InternalSim initializing...
2018-12-18T22:38:38.794Z,1545172718.794 [InternalSim](DEBUG): oceanModelVarCount=0
2018-12-18T22:38:38.852Z,1545172718.852 [logger ThreadHandler](INFO): Handler Thread ID is 864
2018-12-18T22:38:38.907Z,1545172718.907 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 865
2018-12-18T22:38:38.911Z,1545172718.911 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-12-18T22:38:38.911Z,1545172718.911 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-12-18T22:38:38.911Z,1545172718.911 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-12-18T22:38:38.911Z,1545172718.911 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-12-18T22:38:38.912Z,1545172718.912 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-12-18T22:38:38.912Z,1545172718.912 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-12-18T22:38:38.913Z,1545172718.913 [SBIT](INFO): Initialize SBIT Component.
2018-12-18T22:38:38.913Z,1545172718.913 [SBIT](IMPORTANT): git: 2018-12-13
2018-12-18T22:38:38.914Z,1545172718.914 [SBIT](INFO): git hash: 8200dc43e6ef01082c531ff0fab84136a371dc2d
2018-12-18T22:38:38.915Z,1545172718.915 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2018-12-18T22:38:38.915Z,1545172718.915 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #7 PREEMPT Mon Dec 17 14:09:40 PST 2018
2018-12-18T22:38:38.916Z,1545172718.916 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2018-12-18T22:38:38.917Z,1545172718.917 [IBIT](INFO): Initialize IBIT Component.
2018-12-18T22:38:38.925Z,1545172718.925 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 866
2018-12-18T22:38:38.927Z,1545172718.927 [CBIT](DEBUG): Initialize CBIT Component.
2018-12-18T22:38:38.937Z,1545172718.937 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 867
2018-12-18T22:38:38.941Z,1545172718.941 [CBIT](DEBUG): Initialized mux pins.
2018-12-18T22:38:38.941Z,1545172718.941 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2018-12-18T22:38:38.941Z,1545172718.941 [CBIT](DEBUG): Initializing the watchdog timer.
2018-12-18T22:38:38.947Z,1545172718.947 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-12-18T22:38:38.947Z,1545172718.947 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2018-12-18T22:38:38.947Z,1545172718.947 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-12-18T22:38:38.947Z,1545172718.947 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2018-12-18T22:38:38.947Z,1545172718.947 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-12-18T22:38:38.948Z,1545172718.948 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2018-12-18T22:38:38.948Z,1545172718.948 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-12-18T22:38:38.948Z,1545172718.948 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2018-12-18T22:38:38.948Z,1545172718.948 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-12-18T22:38:38.948Z,1545172718.948 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2018-12-18T22:38:38.948Z,1545172718.948 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-12-18T22:38:38.949Z,1545172718.949 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2018-12-18T22:38:38.949Z,1545172718.949 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-12-18T22:38:38.949Z,1545172718.949 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2018-12-18T22:38:38.949Z,1545172718.949 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-12-18T22:38:38.949Z,1545172718.949 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2018-12-18T22:38:38.965Z,1545172718.965 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-12-18T22:38:38.966Z,1545172718.966 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-12-18T22:38:38.968Z,1545172718.968 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-12-18T22:38:38.969Z,1545172718.969 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-12-18T22:38:38.969Z,1545172718.969 [BackSeatDriver](DEBUG): Initialize BackSeatDriver Component.
2018-12-18T22:38:39.114Z,1545172719.114 [CTD_NeilBrown](DEBUG): Initializing CTD_NeilBrown.
2018-12-18T22:38:39.573Z,1545172719.573 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-12-18T22:38:39.574Z,1545172719.574 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2018-12-18T22:38:39.575Z,1545172719.575 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T22:38:39.575Z,1545172719.575 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T22:38:39.576Z,1545172719.576 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-18T22:38:39.576Z,1545172719.576 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T22:38:39.577Z,1545172719.577 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T22:38:39.577Z,1545172719.577 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-12-18T22:38:39.577Z,1545172719.577 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-12-18T22:38:39.578Z,1545172719.578 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-12-18T22:38:39.629Z,1545172719.629 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-18T22:38:39.649Z,1545172719.648 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-12-18T22:38:39.681Z,1545172719.681 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-12-18T22:38:39.744Z,1545172719.744 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-12-18T22:38:39.745Z,1545172719.745 [Default:A.Wait](DEBUG): Construct Wait.
2018-12-18T22:38:39.747Z,1545172719.747 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-18T22:38:39.809Z,1545172719.809 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-12-18T22:38:39.812Z,1545172719.812 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-12-18T22:38:39.834Z,1545172719.834 [Default:E.Execute](DEBUG): Construct Execute.
2018-12-18T22:38:39.837Z,1545172719.837 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-12-18T22:38:39.841Z,1545172719.841 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,PAR_Licor,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,YawRateCalculator,ElevatorOffsetCalculator,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,BackSeatDriver,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-12-18T22:38:40.130Z,1545172720.130 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-12-18T22:38:40.143Z,1545172720.143 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-12-18T22:38:40.153Z,1545172720.153 [MassServo](DEBUG): Initializing MassServo.
2018-12-18T22:38:40.165Z,1545172720.165 [RudderServo](DEBUG): Initializing RudderServo.
2018-12-18T22:38:40.177Z,1545172720.177 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-12-18T22:38:46.254Z,1545172726.254 [CTD_NeilBrown](FAULT): Failed to acquire real or simulated CTD data within timeout.
2018-12-18T22:38:46.254Z,1545172726.254 [CTD_NeilBrown] Communications Fault, FailCount= 1
2018-12-18T22:38:46.254Z,1545172726.254 [CTD_NeilBrown](ERROR): Communications Fault
2018-12-18T22:38:46.286Z,1545172726.286 [CBIT](ERROR): Communications Fault in component: CTD_NeilBrown
2018-12-18T22:38:46.287Z,1545172726.287 [CBIT](FAULT): Communications Fault in component: CTD_NeilBrown
2018-12-18T22:38:59.480Z,1545172739.480 [SBIT](IMPORTANT): Beginning Startup BIT
2018-12-18T22:39:01.574Z,1545172741.574 [CommandLine](IMPORTANT): got command quit
2018-12-18T22:39:02.577Z,1545172742.577 [Supervisor](INFO): Stop Mission called by Supervisor::terminate
2018-12-18T22:39:02.580Z,1545172742.580 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T22:39:02.580Z,1545172742.580 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:02.667Z,1545172742.667 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2018-12-18T22:39:02.668Z,1545172742.668 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:02.668Z,1545172742.668 [CommandLine](INFO): Join timeout helper Thread ID is 870
2018-12-18T22:39:02.684Z,1545172742.684 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2018-12-18T22:39:02.685Z,1545172742.685 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:02.725Z,1545172742.725 [NavChartDb](INFO): Join timeout helper Thread ID is 871
2018-12-18T22:39:03.159Z,1545172743.159 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T22:39:03.159Z,1545172743.159 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:03.161Z,1545172743.161 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2018-12-18T22:39:03.161Z,1545172743.161 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:03.162Z,1545172743.162 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 872
2018-12-18T22:39:03.625Z,1545172743.625 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T22:39:03.626Z,1545172743.626 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:03.629Z,1545172743.629 [ComponentRegistry](INFO): Shutting down CTD_NeilBrown ThreadHandler
2018-12-18T22:39:03.629Z,1545172743.629 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:03.630Z,1545172743.630 [CTD_NeilBrown](INFO): Join timeout helper Thread ID is 873
2018-12-18T22:39:03.833Z,1545172743.833 [CTD_NeilBrown ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T22:39:03.833Z,1545172743.833 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:03.861Z,1545172743.861 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2018-12-18T22:39:03.861Z,1545172743.861 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:03.862Z,1545172743.862 [logger](INFO): Join timeout helper Thread ID is 874
2018-12-18T22:39:03.889Z,1545172743.889 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T22:39:03.890Z,1545172743.890 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:03.910Z,1545172743.910 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2018-12-18T22:39:03.910Z,1545172743.910 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:03.910Z,1545172743.910 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2018-12-18T22:39:03.910Z,1545172743.910 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:03.911Z,1545172743.911 [controlThread](INFO): Join timeout helper Thread ID is 875
2018-12-18T22:39:04.245Z,1545172744.245 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T22:39:04.245Z,1545172744.245 [controlThread](DEBUG): Uninitializing ControlThread
2018-12-18T22:39:04.246Z,1545172744.246 [DepthRateCalculator](DEBUG): Uninitializing DepthRateCalculator.
2018-12-18T22:39:04.247Z,1545172744.247 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2018-12-18T22:39:04.248Z,1545172744.248 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2018-12-18T22:39:04.248Z,1545172744.248 [MissionManager](INFO): Uninitializing Mission Default
2018-12-18T22:39:04.251Z,1545172744.251 [MissionManager](INFO): Uninitializing Mission Startup
2018-12-18T22:39:04.252Z,1545172744.252 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2018-12-18T22:39:04.252Z,1545172744.252 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2018-12-18T22:39:04.252Z,1545172744.252 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2018-12-18T22:39:04.253Z,1545172744.253 [BackSeatDriver](DEBUG): Uninitialize BackSeatDriver Component.
2018-12-18T22:39:04.253Z,1545172744.253 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2018-12-18T22:39:04.253Z,1545172744.253 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-12-18T22:39:04.254Z,1545172744.254 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2018-12-18T22:39:04.254Z,1545172744.254 [MassServo](DEBUG): Uninitialize Mass Servo.
2018-12-18T22:39:04.254Z,1545172744.254 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2018-12-18T22:39:04.254Z,1545172744.254 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2018-12-18T22:39:04.255Z,1545172744.255 [SBIT](DEBUG): Uninitialize SBIT Component.
2018-12-18T22:39:04.255Z,1545172744.255 [IBIT](DEBUG): Uninitialize IBIT Component.
2018-12-18T22:39:04.255Z,1545172744.255 [CBIT](DEBUG): Uninitialize CBIT Component.
2018-12-18T22:39:04.256Z,1545172744.256 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:04.295Z,1545172744.295 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:04.299Z,1545172744.299 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:04.340Z,1545172744.340 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T22:39:04.386Z,1545172744.386 [logger ThreadHandler](INFO): Thread cancelled.