2018-12-18T20:10:12.218Z,1545163812.218 [Supervisor](DEBUG): Initializing supervisor.
2018-12-18T20:10:12.230Z,1545163812.230 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-12-18T20:10:12.231Z,1545163812.231 [SyncHandler](INFO): Protected caller Thread ID is 804
2018-12-18T20:10:12.231Z,1545163812.231 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-12-18T20:10:12.242Z,1545163812.242 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-12-18T20:10:12.243Z,1545163812.243 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 805
2018-12-18T20:10:12.245Z,1545163812.245 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-12-18T20:10:12.267Z,1545163812.267 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-12-18T20:10:12.269Z,1545163812.269 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-12-18T20:10:12.269Z,1545163812.269 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 806
2018-12-18T20:10:12.271Z,1545163812.271 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-12-18T20:10:12.282Z,1545163812.282 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-12-18T20:10:12.283Z,1545163812.283 [logger ThreadHandler](INFO): Protected caller Thread ID is 807
2018-12-18T20:10:12.284Z,1545163812.284 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-12-18T20:10:12.285Z,1545163812.285 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-12-18T20:10:12.298Z,1545163812.298 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-12-18T20:10:12.473Z,1545163812.473 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-12-18T20:10:12.475Z,1545163812.475 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-12-18T20:10:12.633Z,1545163812.633 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-12-18T20:10:12.635Z,1545163812.635 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-12-18T20:10:12.898Z,1545163812.898 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-12-18T20:10:12.900Z,1545163812.900 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-12-18T20:10:13.311Z,1545163813.311 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-12-18T20:10:13.312Z,1545163813.312 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-12-18T20:10:13.702Z,1545163813.702 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-12-18T20:10:13.703Z,1545163813.703 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-12-18T20:10:14.225Z,1545163814.225 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-12-18T20:10:14.228Z,1545163814.228 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-12-18T20:10:14.785Z,1545163814.785 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-12-18T20:10:14.786Z,1545163814.786 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-12-18T20:10:15.298Z,1545163815.298 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-12-18T20:10:15.300Z,1545163815.300 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-12-18T20:10:15.386Z,1545163815.386 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-12-18T20:10:15.751Z,1545163815.751 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-12-18T20:10:15.753Z,1545163815.753 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-12-18T20:10:15.933Z,1545163815.933 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-12-18T20:10:15.934Z,1545163815.934 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-12-18T20:10:16.193Z,1545163816.193 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-12-18T20:10:16.194Z,1545163816.194 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-12-18T20:10:16.448Z,1545163816.448 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-12-18T20:10:16.449Z,1545163816.449 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-12-18T20:10:16.558Z,1545163816.558 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-12-18T20:10:16.558Z,1545163816.558 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-12-18T20:10:16.713Z,1545163816.713 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-12-18T20:10:16.715Z,1545163816.715 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-INSERTREALNAME/
2018-12-18T20:10:16.715Z,1545163816.715 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2018-12-18T20:10:16.719Z,1545163816.719 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-12-18T20:10:16.944Z,1545163816.944 [InternalSim] Loaded
2018-12-18T20:10:16.944Z,1545163816.944 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2018-12-18T20:10:16.945Z,1545163816.945 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-12-18T20:10:16.945Z,1545163816.945 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-12-18T20:10:16.969Z,1545163816.969 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-12-18T20:10:16.970Z,1545163816.970 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-12-18T20:10:17.036Z,1545163817.036 [DepthRateCalculator] Loaded
2018-12-18T20:10:17.036Z,1545163817.036 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-12-18T20:10:17.044Z,1545163817.044 [PitchRateCalculator] Loaded
2018-12-18T20:10:17.044Z,1545163817.044 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-12-18T20:10:17.059Z,1545163817.059 [SpeedCalculator] Loaded
2018-12-18T20:10:17.059Z,1545163817.059 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-12-18T20:10:17.079Z,1545163817.079 [TempGradientCalculator] Loaded
2018-12-18T20:10:17.079Z,1545163817.079 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-12-18T20:10:17.088Z,1545163817.088 [YawRateCalculator] Loaded
2018-12-18T20:10:17.089Z,1545163817.089 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-12-18T20:10:17.134Z,1545163817.134 [ElevatorOffsetCalculator] Loaded
2018-12-18T20:10:17.134Z,1545163817.134 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-12-18T20:10:17.135Z,1545163817.135 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-12-18T20:10:17.135Z,1545163817.135 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-12-18T20:10:17.180Z,1545163817.180 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-12-18T20:10:17.180Z,1545163817.180 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-12-18T20:10:17.406Z,1545163817.406 [Module Loader](ERROR): Cannot load library: libboost_system.so.1.63.0: cannot open shared object file: No such file or directory
2018-12-18T20:10:17.406Z,1545163817.406 [Module Loader](ERROR): Could not load the module at Modules/Sensor.so
2018-12-18T20:10:17.408Z,1545163817.408 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-12-18T20:10:17.581Z,1545163817.581 [SBIT](DEBUG): Construct Startup Built In Test.
2018-12-18T20:10:17.621Z,1545163817.621 [SBIT] Loaded
2018-12-18T20:10:17.621Z,1545163817.621 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-12-18T20:10:17.622Z,1545163817.622 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-12-18T20:10:17.655Z,1545163817.655 [IBIT] Loaded
2018-12-18T20:10:17.655Z,1545163817.655 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-12-18T20:10:17.658Z,1545163817.658 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-12-18T20:10:18.093Z,1545163818.093 [CBIT] Loaded
2018-12-18T20:10:18.093Z,1545163818.093 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-12-18T20:10:18.093Z,1545163818.093 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-12-18T20:10:18.094Z,1545163818.094 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-12-18T20:10:18.447Z,1545163818.447 [CTD_NeilBrown] Loaded
2018-12-18T20:10:18.447Z,1545163818.447 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2018-12-18T20:10:18.449Z,1545163818.449 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4064D4E0
2018-12-18T20:10:18.449Z,1545163818.449 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 853
2018-12-18T20:10:18.466Z,1545163818.466 [PAR_Licor] Loaded
2018-12-18T20:10:18.466Z,1545163818.466 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-12-18T20:10:18.523Z,1545163818.523 [WetLabsBB2FL] Loaded
2018-12-18T20:10:18.523Z,1545163818.523 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-12-18T20:10:18.525Z,1545163818.525 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 4067D4E0
2018-12-18T20:10:18.525Z,1545163818.525 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 854
2018-12-18T20:10:18.526Z,1545163818.526 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-12-18T20:10:18.527Z,1545163818.527 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-12-18T20:10:18.847Z,1545163818.847 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-12-18T20:10:18.847Z,1545163818.847 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-12-18T20:10:18.939Z,1545163818.939 [VerticalControl](DEBUG): Construct VerticalControl.
2018-12-18T20:10:19.031Z,1545163819.031 [VerticalControl] Loaded
2018-12-18T20:10:19.031Z,1545163819.031 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-12-18T20:10:19.032Z,1545163819.032 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-12-18T20:10:19.093Z,1545163819.093 [HorizontalControl] Loaded
2018-12-18T20:10:19.093Z,1545163819.093 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-12-18T20:10:19.094Z,1545163819.094 [SpeedControl](DEBUG): Construct SpeedControl.
2018-12-18T20:10:19.096Z,1545163819.096 [SpeedControl] Loaded
2018-12-18T20:10:19.096Z,1545163819.096 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-12-18T20:10:19.097Z,1545163819.097 [BackSeatDriver](DEBUG): Construct BackSeatDriver.
2018-12-18T20:10:19.098Z,1545163819.098 [BackSeatDriver] Loaded
2018-12-18T20:10:19.099Z,1545163819.099 [ComponentRegistry](DEBUG): SyncComponent "BackSeatDriver" handled in the control thread.
2018-12-18T20:10:19.099Z,1545163819.099 [LoopControl](DEBUG): Construct LoopControl.
2018-12-18T20:10:19.100Z,1545163819.100 [LoopControl] Loaded
2018-12-18T20:10:19.100Z,1545163819.100 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-12-18T20:10:19.101Z,1545163819.101 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-12-18T20:10:19.101Z,1545163819.101 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-12-18T20:10:19.313Z,1545163819.313 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-12-18T20:10:19.314Z,1545163819.314 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-12-18T20:10:19.469Z,1545163819.469 [BuoyancyServo] Loaded
2018-12-18T20:10:19.469Z,1545163819.469 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-12-18T20:10:19.481Z,1545163819.481 [ElevatorServo] Loaded
2018-12-18T20:10:19.481Z,1545163819.481 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-12-18T20:10:19.494Z,1545163819.494 [MassServo] Loaded
2018-12-18T20:10:19.494Z,1545163819.494 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-12-18T20:10:19.505Z,1545163819.505 [RudderServo] Loaded
2018-12-18T20:10:19.505Z,1545163819.505 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-12-18T20:10:19.515Z,1545163819.515 [ThrusterServo] Loaded
2018-12-18T20:10:19.516Z,1545163819.516 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-12-18T20:10:19.516Z,1545163819.516 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-12-18T20:10:19.517Z,1545163819.517 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-12-18T20:10:19.655Z,1545163819.655 [DeadReckonUsingMultipleVelocitySources] Loaded
2018-12-18T20:10:19.655Z,1545163819.655 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2018-12-18T20:10:19.730Z,1545163819.730 [DeadReckonUsingSpeedCalculator] Loaded
2018-12-18T20:10:19.730Z,1545163819.730 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-12-18T20:10:19.746Z,1545163819.746 [NavChart] Loaded
2018-12-18T20:10:19.747Z,1545163819.747 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-12-18T20:10:19.753Z,1545163819.753 [UniversalFixResidualReporter] Loaded
2018-12-18T20:10:19.753Z,1545163819.753 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-12-18T20:10:19.753Z,1545163819.753 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-12-18T20:10:19.757Z,1545163819.757 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-12-18T20:10:19.758Z,1545163819.758 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-12-18T20:10:19.764Z,1545163819.764 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-12-18T20:10:19.765Z,1545163819.765 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 407D74E0
2018-12-18T20:10:19.766Z,1545163819.766 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 855
2018-12-18T20:10:19.775Z,1545163819.775 [Supervisor](INFO): Main Thread ID is 800
2018-12-18T20:10:19.775Z,1545163819.775 [Supervisor](DEBUG): Running supervisor.
2018-12-18T20:10:19.776Z,1545163819.776 [CommandLine ThreadHandler](INFO): Handler Thread ID is 856
2018-12-18T20:10:19.779Z,1545163819.779 [controlThread ThreadHandler](INFO): Handler Thread ID is 857
2018-12-18T20:10:19.780Z,1545163819.780 [controlThread](DEBUG): Initializing ControlThread
2018-12-18T20:10:19.781Z,1545163819.781 [InternalSim](DEBUG):  InternalSim initializing...
2018-12-18T20:10:19.787Z,1545163819.787 [InternalSim](DEBUG): oceanModelVarCount=0
2018-12-18T20:10:19.864Z,1545163819.864 [logger ThreadHandler](INFO): Handler Thread ID is 858
2018-12-18T20:10:19.938Z,1545163819.938 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 859
2018-12-18T20:10:19.947Z,1545163819.947 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 860
2018-12-18T20:10:19.957Z,1545163819.957 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-12-18T20:10:19.958Z,1545163819.958 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-12-18T20:10:19.959Z,1545163819.959 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 861
2018-12-18T20:10:19.967Z,1545163819.967 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-12-18T20:10:19.967Z,1545163819.967 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2018-12-18T20:10:19.967Z,1545163819.967 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-12-18T20:10:19.967Z,1545163819.967 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2018-12-18T20:10:19.967Z,1545163819.967 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-12-18T20:10:19.968Z,1545163819.968 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2018-12-18T20:10:19.968Z,1545163819.968 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-12-18T20:10:19.968Z,1545163819.968 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2018-12-18T20:10:19.968Z,1545163819.968 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-12-18T20:10:19.968Z,1545163819.968 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2018-12-18T20:10:19.968Z,1545163819.968 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-12-18T20:10:19.969Z,1545163819.969 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2018-12-18T20:10:19.969Z,1545163819.969 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-12-18T20:10:19.969Z,1545163819.969 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2018-12-18T20:10:19.969Z,1545163819.969 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-12-18T20:10:19.969Z,1545163819.969 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2018-12-18T20:10:19.971Z,1545163819.971 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-12-18T20:10:19.982Z,1545163819.982 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-12-18T20:10:19.984Z,1545163819.984 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-12-18T20:10:19.984Z,1545163819.984 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-12-18T20:10:19.986Z,1545163819.986 [SBIT](INFO): Initialize SBIT Component.
2018-12-18T20:10:19.995Z,1545163819.995 [SBIT](IMPORTANT): git: 2018-12-13
2018-12-18T20:10:19.995Z,1545163819.995 [SBIT](INFO): git hash: 8200dc43e6ef01082c531ff0fab84136a371dc2d
2018-12-18T20:10:19.998Z,1545163819.998 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2018-12-18T20:10:19.998Z,1545163819.998 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #2 PREEMPT Thu Jan 11 20:13:48 PST 2018
2018-12-18T20:10:19.999Z,1545163819.999 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2018-12-18T20:10:19.000Z,1545163820.000 [IBIT](INFO): Initialize IBIT Component.
2018-12-18T20:10:20.001Z,1545163820.001 [CBIT](DEBUG): Initialize CBIT Component.
2018-12-18T20:10:20.014Z,1545163820.014 [CBIT](DEBUG): Initialized mux pins.
2018-12-18T20:10:20.014Z,1545163820.014 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2018-12-18T20:10:20.014Z,1545163820.014 [CBIT](DEBUG): Initializing the watchdog timer.
2018-12-18T20:10:20.038Z,1545163820.038 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-12-18T20:10:20.039Z,1545163820.039 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-12-18T20:10:20.041Z,1545163820.041 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-12-18T20:10:20.041Z,1545163820.041 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-12-18T20:10:20.042Z,1545163820.042 [BackSeatDriver](DEBUG): Initialize BackSeatDriver Component.
2018-12-18T20:10:20.155Z,1545163820.155 [CTD_NeilBrown](DEBUG): Initializing CTD_NeilBrown.
2018-12-18T20:10:20.805Z,1545163820.805 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-12-18T20:10:20.806Z,1545163820.806 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2018-12-18T20:10:20.807Z,1545163820.807 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T20:10:20.807Z,1545163820.807 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T20:10:20.808Z,1545163820.808 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-18T20:10:20.808Z,1545163820.808 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T20:10:20.808Z,1545163820.808 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T20:10:20.809Z,1545163820.809 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-12-18T20:10:20.809Z,1545163820.809 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-12-18T20:10:20.810Z,1545163820.810 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-12-18T20:10:20.834Z,1545163820.834 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-18T20:10:20.860Z,1545163820.860 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-12-18T20:10:20.861Z,1545163820.861 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-12-18T20:10:20.949Z,1545163820.949 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-12-18T20:10:20.950Z,1545163820.950 [Default:A.Wait](DEBUG): Construct Wait.
2018-12-18T20:10:20.951Z,1545163820.951 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-18T20:10:20.986Z,1545163820.986 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-12-18T20:10:20.989Z,1545163820.989 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-12-18T20:10:21.014Z,1545163821.014 [Default:E.Execute](DEBUG): Construct Execute.
2018-12-18T20:10:21.018Z,1545163821.018 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-12-18T20:10:21.038Z,1545163821.038 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,PAR_Licor,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,YawRateCalculator,ElevatorOffsetCalculator,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,BackSeatDriver,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-12-18T20:10:21.347Z,1545163821.347 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-12-18T20:10:21.366Z,1545163821.366 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-12-18T20:10:21.372Z,1545163821.372 [MassServo](DEBUG): Initializing MassServo.
2018-12-18T20:10:21.394Z,1545163821.394 [RudderServo](DEBUG): Initializing RudderServo.
2018-12-18T20:10:21.418Z,1545163821.418 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-12-18T20:10:27.303Z,1545163827.303 [CTD_NeilBrown](FAULT): Failed to acquire real or simulated CTD data within timeout.
2018-12-18T20:10:27.303Z,1545163827.303 [CTD_NeilBrown] Communications Fault, FailCount= 1
2018-12-18T20:10:27.303Z,1545163827.303 [CTD_NeilBrown](ERROR): Communications Fault
2018-12-18T20:10:27.515Z,1545163827.515 [CBIT](ERROR): Communications Fault in component: CTD_NeilBrown
2018-12-18T20:10:27.516Z,1545163827.516 [CBIT](FAULT): Communications Fault in component: CTD_NeilBrown
2018-12-18T20:10:40.731Z,1545163840.731 [SBIT](IMPORTANT): Beginning Startup BIT
2018-12-18T20:10:55.299Z,1545163855.299 [CommandLine](IMPORTANT): got command quit
2018-12-18T20:10:56.302Z,1545163856.302 [Supervisor](INFO): Stop Mission called by Supervisor::terminate
2018-12-18T20:10:56.305Z,1545163856.305 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T20:10:56.305Z,1545163856.305 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:56.378Z,1545163856.378 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2018-12-18T20:10:56.378Z,1545163856.378 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:56.379Z,1545163856.379 [CommandLine](INFO): Join timeout helper Thread ID is 866
2018-12-18T20:10:56.386Z,1545163856.386 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2018-12-18T20:10:56.386Z,1545163856.386 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:56.387Z,1545163856.387 [NavChartDb](INFO): Join timeout helper Thread ID is 867
2018-12-18T20:10:57.594Z,1545163857.594 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T20:10:57.595Z,1545163857.595 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.606Z,1545163857.606 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2018-12-18T20:10:57.606Z,1545163857.606 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.607Z,1545163857.607 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 868
2018-12-18T20:10:57.804Z,1545163857.804 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T20:10:57.805Z,1545163857.805 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.806Z,1545163857.806 [ComponentRegistry](INFO): Shutting down CTD_NeilBrown ThreadHandler
2018-12-18T20:10:57.806Z,1545163857.806 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.807Z,1545163857.807 [CTD_NeilBrown](INFO): Join timeout helper Thread ID is 869
2018-12-18T20:10:57.814Z,1545163857.814 [CTD_NeilBrown ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T20:10:57.814Z,1545163857.814 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.826Z,1545163857.826 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2018-12-18T20:10:57.826Z,1545163857.826 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.827Z,1545163857.827 [logger](INFO): Join timeout helper Thread ID is 870
2018-12-18T20:10:57.834Z,1545163857.834 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T20:10:57.834Z,1545163857.834 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.847Z,1545163857.847 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2018-12-18T20:10:57.847Z,1545163857.847 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.847Z,1545163857.847 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2018-12-18T20:10:57.847Z,1545163857.847 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.848Z,1545163857.848 [controlThread](INFO): Join timeout helper Thread ID is 871
2018-12-18T20:10:57.878Z,1545163857.878 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T20:10:57.878Z,1545163857.878 [controlThread](DEBUG): Uninitializing ControlThread
2018-12-18T20:10:57.879Z,1545163857.879 [DepthRateCalculator](DEBUG): Uninitializing DepthRateCalculator.
2018-12-18T20:10:57.880Z,1545163857.880 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2018-12-18T20:10:57.881Z,1545163857.881 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2018-12-18T20:10:57.881Z,1545163857.881 [MissionManager](INFO): Uninitializing Mission Default
2018-12-18T20:10:57.884Z,1545163857.884 [MissionManager](INFO): Uninitializing Mission Startup
2018-12-18T20:10:57.885Z,1545163857.885 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2018-12-18T20:10:57.885Z,1545163857.885 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2018-12-18T20:10:57.885Z,1545163857.885 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2018-12-18T20:10:57.885Z,1545163857.885 [BackSeatDriver](DEBUG): Uninitialize BackSeatDriver Component.
2018-12-18T20:10:57.886Z,1545163857.886 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2018-12-18T20:10:57.886Z,1545163857.886 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-12-18T20:10:57.886Z,1545163857.886 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2018-12-18T20:10:57.887Z,1545163857.887 [MassServo](DEBUG): Uninitialize Mass Servo.
2018-12-18T20:10:57.887Z,1545163857.887 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2018-12-18T20:10:57.887Z,1545163857.887 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2018-12-18T20:10:57.887Z,1545163857.887 [SBIT](DEBUG): Uninitialize SBIT Component.
2018-12-18T20:10:57.887Z,1545163857.887 [IBIT](DEBUG): Uninitialize IBIT Component.
2018-12-18T20:10:57.888Z,1545163857.888 [CBIT](DEBUG): Uninitialize CBIT Component.
2018-12-18T20:10:57.888Z,1545163857.888 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.929Z,1545163857.929 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.932Z,1545163857.932 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:57.972Z,1545163857.972 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T20:10:58.013Z,1545163858.013 [logger ThreadHandler](INFO): Thread cancelled.