2018-12-18T05:53:09.509Z,1545112389.509 [Supervisor](DEBUG): Initializing supervisor.
2018-12-18T05:53:09.515Z,1545112389.515 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-12-18T05:53:09.515Z,1545112389.515 [SyncHandler](INFO): Protected caller Thread ID is 805
2018-12-18T05:53:09.516Z,1545112389.516 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-12-18T05:53:09.517Z,1545112389.517 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-12-18T05:53:09.518Z,1545112389.518 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 806
2018-12-18T05:53:09.521Z,1545112389.521 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-12-18T05:53:09.533Z,1545112389.533 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-12-18T05:53:09.534Z,1545112389.534 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-12-18T05:53:09.535Z,1545112389.535 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 807
2018-12-18T05:53:09.536Z,1545112389.536 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-12-18T05:53:09.537Z,1545112389.537 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-12-18T05:53:09.538Z,1545112389.538 [logger ThreadHandler](INFO): Protected caller Thread ID is 808
2018-12-18T05:53:09.540Z,1545112389.540 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-12-18T05:53:09.541Z,1545112389.541 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-12-18T05:53:09.545Z,1545112389.545 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-12-18T05:53:09.675Z,1545112389.675 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-12-18T05:53:09.677Z,1545112389.677 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-12-18T05:53:09.799Z,1545112389.799 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-12-18T05:53:09.801Z,1545112389.801 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-12-18T05:53:10.055Z,1545112390.055 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-12-18T05:53:10.057Z,1545112390.057 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-12-18T05:53:10.524Z,1545112390.524 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-12-18T05:53:10.525Z,1545112390.525 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-12-18T05:53:10.944Z,1545112390.944 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-12-18T05:53:10.945Z,1545112390.945 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-12-18T05:53:11.478Z,1545112391.478 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-12-18T05:53:11.480Z,1545112391.480 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-12-18T05:53:12.029Z,1545112392.029 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-12-18T05:53:12.030Z,1545112392.030 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-12-18T05:53:12.563Z,1545112392.563 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-12-18T05:53:12.565Z,1545112392.565 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-12-18T05:53:12.861Z,1545112392.861 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-12-18T05:53:13.266Z,1545112393.266 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-12-18T05:53:13.268Z,1545112393.268 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-12-18T05:53:13.452Z,1545112393.452 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-12-18T05:53:13.453Z,1545112393.453 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-12-18T05:53:13.723Z,1545112393.723 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-12-18T05:53:13.724Z,1545112393.724 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-12-18T05:53:13.981Z,1545112393.981 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-12-18T05:53:13.982Z,1545112393.982 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-12-18T05:53:14.113Z,1545112394.113 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-12-18T05:53:14.114Z,1545112394.114 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-12-18T05:53:14.355Z,1545112394.355 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-12-18T05:53:14.357Z,1545112394.357 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-INSERTREALNAME/
2018-12-18T05:53:14.358Z,1545112394.358 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-INSERTREALNAME/root/
2018-12-18T05:53:14.358Z,1545112394.358 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2018-12-18T05:53:14.368Z,1545112394.368 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-12-18T05:53:14.599Z,1545112394.599 [InternalSim] Loaded
2018-12-18T05:53:14.599Z,1545112394.599 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2018-12-18T05:53:14.599Z,1545112394.599 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-12-18T05:53:14.601Z,1545112394.601 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-12-18T05:53:14.626Z,1545112394.626 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-12-18T05:53:14.626Z,1545112394.626 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-12-18T05:53:14.690Z,1545112394.690 [DepthRateCalculator] Loaded
2018-12-18T05:53:14.691Z,1545112394.691 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-12-18T05:53:14.705Z,1545112394.705 [PitchRateCalculator] Loaded
2018-12-18T05:53:14.705Z,1545112394.705 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-12-18T05:53:14.722Z,1545112394.722 [SpeedCalculator] Loaded
2018-12-18T05:53:14.722Z,1545112394.722 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-12-18T05:53:14.747Z,1545112394.747 [TempGradientCalculator] Loaded
2018-12-18T05:53:14.748Z,1545112394.748 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-12-18T05:53:14.753Z,1545112394.753 [YawRateCalculator] Loaded
2018-12-18T05:53:14.753Z,1545112394.753 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-12-18T05:53:14.797Z,1545112394.797 [ElevatorOffsetCalculator] Loaded
2018-12-18T05:53:14.797Z,1545112394.797 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-12-18T05:53:14.798Z,1545112394.798 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-12-18T05:53:14.798Z,1545112394.798 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-12-18T05:53:14.842Z,1545112394.842 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-12-18T05:53:14.842Z,1545112394.842 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-12-18T05:53:15.043Z,1545112395.043 [Module Loader](ERROR): Cannot load library: libboost_system.so.1.63.0: cannot open shared object file: No such file or directory
2018-12-18T05:53:15.043Z,1545112395.043 [Module Loader](ERROR): Could not load the module at Modules/Sensor.so
2018-12-18T05:53:15.045Z,1545112395.045 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-12-18T05:53:15.220Z,1545112395.220 [SBIT](DEBUG): Construct Startup Built In Test.
2018-12-18T05:53:15.245Z,1545112395.245 [SBIT] Loaded
2018-12-18T05:53:15.245Z,1545112395.245 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-12-18T05:53:15.246Z,1545112395.246 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-12-18T05:53:15.282Z,1545112395.282 [IBIT] Loaded
2018-12-18T05:53:15.282Z,1545112395.282 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-12-18T05:53:15.285Z,1545112395.285 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-12-18T05:53:15.701Z,1545112395.701 [CBIT] Loaded
2018-12-18T05:53:15.701Z,1545112395.701 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-12-18T05:53:15.701Z,1545112395.701 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-12-18T05:53:15.702Z,1545112395.702 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-12-18T05:53:16.048Z,1545112396.048 [CTD_NeilBrown] Loaded
2018-12-18T05:53:16.048Z,1545112396.048 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2018-12-18T05:53:16.049Z,1545112396.049 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4064D4E0
2018-12-18T05:53:16.050Z,1545112396.050 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 855
2018-12-18T05:53:16.077Z,1545112396.077 [PAR_Licor] Loaded
2018-12-18T05:53:16.078Z,1545112396.078 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-12-18T05:53:16.140Z,1545112396.140 [WetLabsBB2FL] Loaded
2018-12-18T05:53:16.141Z,1545112396.141 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-12-18T05:53:16.142Z,1545112396.142 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 4067D4E0
2018-12-18T05:53:16.143Z,1545112396.143 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 856
2018-12-18T05:53:16.144Z,1545112396.144 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-12-18T05:53:16.146Z,1545112396.146 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-12-18T05:53:16.450Z,1545112396.450 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-12-18T05:53:16.450Z,1545112396.450 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-12-18T05:53:16.538Z,1545112396.538 [VerticalControl](DEBUG): Construct VerticalControl.
2018-12-18T05:53:16.624Z,1545112396.624 [VerticalControl] Loaded
2018-12-18T05:53:16.625Z,1545112396.625 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-12-18T05:53:16.625Z,1545112396.625 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-12-18T05:53:16.681Z,1545112396.681 [HorizontalControl] Loaded
2018-12-18T05:53:16.682Z,1545112396.682 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-12-18T05:53:16.682Z,1545112396.682 [SpeedControl](DEBUG): Construct SpeedControl.
2018-12-18T05:53:16.684Z,1545112396.684 [SpeedControl] Loaded
2018-12-18T05:53:16.684Z,1545112396.684 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-12-18T05:53:16.685Z,1545112396.685 [BackSeatDriver](DEBUG): Construct BackSeatDriver.
2018-12-18T05:53:16.687Z,1545112396.687 [BackSeatDriver] Loaded
2018-12-18T05:53:16.687Z,1545112396.687 [ComponentRegistry](DEBUG): SyncComponent "BackSeatDriver" handled in the control thread.
2018-12-18T05:53:16.688Z,1545112396.688 [LoopControl](DEBUG): Construct LoopControl.
2018-12-18T05:53:16.688Z,1545112396.688 [LoopControl] Loaded
2018-12-18T05:53:16.689Z,1545112396.689 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-12-18T05:53:16.689Z,1545112396.689 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-12-18T05:53:16.690Z,1545112396.690 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-12-18T05:53:16.792Z,1545112396.792 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-12-18T05:53:16.792Z,1545112396.792 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-12-18T05:53:16.909Z,1545112396.909 [BuoyancyServo] Loaded
2018-12-18T05:53:16.909Z,1545112396.909 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-12-18T05:53:16.920Z,1545112396.920 [ElevatorServo] Loaded
2018-12-18T05:53:16.921Z,1545112396.921 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-12-18T05:53:16.931Z,1545112396.931 [MassServo] Loaded
2018-12-18T05:53:16.932Z,1545112396.932 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-12-18T05:53:16.943Z,1545112396.943 [RudderServo] Loaded
2018-12-18T05:53:16.943Z,1545112396.943 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-12-18T05:53:16.954Z,1545112396.954 [ThrusterServo] Loaded
2018-12-18T05:53:16.954Z,1545112396.954 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-12-18T05:53:16.955Z,1545112396.955 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-12-18T05:53:16.955Z,1545112396.955 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-12-18T05:53:17.073Z,1545112397.073 [DeadReckonUsingMultipleVelocitySources] Loaded
2018-12-18T05:53:17.073Z,1545112397.073 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2018-12-18T05:53:17.131Z,1545112397.131 [DeadReckonUsingSpeedCalculator] Loaded
2018-12-18T05:53:17.131Z,1545112397.131 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-12-18T05:53:17.148Z,1545112397.148 [NavChart] Loaded
2018-12-18T05:53:17.148Z,1545112397.148 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-12-18T05:53:17.152Z,1545112397.152 [UniversalFixResidualReporter] Loaded
2018-12-18T05:53:17.152Z,1545112397.152 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-12-18T05:53:17.153Z,1545112397.153 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-12-18T05:53:17.156Z,1545112397.156 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-12-18T05:53:17.157Z,1545112397.157 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-12-18T05:53:17.164Z,1545112397.164 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-12-18T05:53:17.165Z,1545112397.165 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 407D74E0
2018-12-18T05:53:17.165Z,1545112397.165 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 857
2018-12-18T05:53:17.170Z,1545112397.170 [Supervisor](INFO): Main Thread ID is 801
2018-12-18T05:53:17.170Z,1545112397.170 [Supervisor](DEBUG): Running supervisor.
2018-12-18T05:53:17.171Z,1545112397.171 [CommandLine ThreadHandler](INFO): Handler Thread ID is 858
2018-12-18T05:53:17.178Z,1545112397.178 [CommandLine](IMPORTANT): got command quit
2018-12-18T05:53:17.184Z,1545112397.184 [controlThread ThreadHandler](INFO): Handler Thread ID is 859
2018-12-18T05:53:17.184Z,1545112397.184 [controlThread](DEBUG): Initializing ControlThread
2018-12-18T05:53:17.185Z,1545112397.185 [InternalSim](DEBUG):  InternalSim initializing...
2018-12-18T05:53:17.191Z,1545112397.191 [InternalSim](DEBUG): oceanModelVarCount=0
2018-12-18T05:53:17.249Z,1545112397.249 [logger ThreadHandler](INFO): Handler Thread ID is 860
2018-12-18T05:53:17.299Z,1545112397.299 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-12-18T05:53:17.299Z,1545112397.299 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-12-18T05:53:17.299Z,1545112397.299 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-12-18T05:53:17.300Z,1545112397.300 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-12-18T05:53:17.300Z,1545112397.300 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-12-18T05:53:17.300Z,1545112397.300 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-12-18T05:53:17.301Z,1545112397.301 [SBIT](INFO): Initialize SBIT Component.
2018-12-18T05:53:17.302Z,1545112397.302 [SBIT](IMPORTANT): git: 2018-12-13
2018-12-18T05:53:17.302Z,1545112397.302 [SBIT](INFO): git hash: 8200dc43e6ef01082c531ff0fab84136a371dc2d
2018-12-18T05:53:17.303Z,1545112397.303 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2018-12-18T05:53:17.303Z,1545112397.303 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #7 PREEMPT Mon Dec 17 14:09:40 PST 2018
2018-12-18T05:53:17.304Z,1545112397.304 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2018-12-18T05:53:17.305Z,1545112397.305 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 861
2018-12-18T05:53:17.306Z,1545112397.306 [CTD_NeilBrown](DEBUG): Initializing CTD_NeilBrown.
2018-12-18T05:53:17.316Z,1545112397.316 [IBIT](INFO): Initialize IBIT Component.
2018-12-18T05:53:17.317Z,1545112397.317 [CBIT](DEBUG): Initialize CBIT Component.
2018-12-18T05:53:17.328Z,1545112397.328 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 862
2018-12-18T05:53:17.331Z,1545112397.331 [CBIT](DEBUG): Initialized mux pins.
2018-12-18T05:53:17.332Z,1545112397.332 [CBIT](DEBUG): Initializing the watchdog timer.
2018-12-18T05:53:17.344Z,1545112397.344 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 863
2018-12-18T05:53:17.353Z,1545112397.353 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-12-18T05:53:17.353Z,1545112397.353 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2018-12-18T05:53:17.353Z,1545112397.353 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-12-18T05:53:17.353Z,1545112397.353 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2018-12-18T05:53:17.353Z,1545112397.353 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-12-18T05:53:17.353Z,1545112397.353 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2018-12-18T05:53:17.354Z,1545112397.354 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-12-18T05:53:17.354Z,1545112397.354 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2018-12-18T05:53:17.354Z,1545112397.354 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-12-18T05:53:17.354Z,1545112397.354 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2018-12-18T05:53:17.354Z,1545112397.354 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-12-18T05:53:17.354Z,1545112397.354 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2018-12-18T05:53:17.355Z,1545112397.355 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-12-18T05:53:17.355Z,1545112397.355 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2018-12-18T05:53:17.355Z,1545112397.355 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-12-18T05:53:17.355Z,1545112397.355 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2018-12-18T05:53:17.355Z,1545112397.355 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-12-18T05:53:17.356Z,1545112397.356 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-12-18T05:53:17.358Z,1545112397.358 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-12-18T05:53:17.359Z,1545112397.359 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-12-18T05:53:17.359Z,1545112397.359 [BackSeatDriver](DEBUG): Initialize BackSeatDriver Component.
2018-12-18T05:53:17.823Z,1545112397.823 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-12-18T05:53:17.825Z,1545112397.825 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2018-12-18T05:53:17.825Z,1545112397.825 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T05:53:17.826Z,1545112397.826 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T05:53:17.826Z,1545112397.826 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-18T05:53:17.827Z,1545112397.827 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T05:53:17.827Z,1545112397.827 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T05:53:17.827Z,1545112397.827 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-12-18T05:53:17.828Z,1545112397.828 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-12-18T05:53:17.829Z,1545112397.829 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-12-18T05:53:17.941Z,1545112397.941 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-18T05:53:17.952Z,1545112397.952 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-12-18T05:53:17.953Z,1545112397.953 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-12-18T05:53:18.020Z,1545112398.020 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-12-18T05:53:18.021Z,1545112398.021 [Default:A.Wait](DEBUG): Construct Wait.
2018-12-18T05:53:18.023Z,1545112398.023 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-18T05:53:18.066Z,1545112398.066 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-12-18T05:53:18.068Z,1545112398.068 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-12-18T05:53:18.082Z,1545112398.082 [Default:E.Execute](DEBUG): Construct Execute.
2018-12-18T05:53:18.086Z,1545112398.086 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-12-18T05:53:18.103Z,1545112398.103 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,PAR_Licor,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,YawRateCalculator,ElevatorOffsetCalculator,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,BackSeatDriver,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-12-18T05:53:18.183Z,1545112398.183 [Supervisor](INFO): Stop Mission called by Supervisor::terminate
2018-12-18T05:53:18.186Z,1545112398.186 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:53:18.186Z,1545112398.186 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:18.367Z,1545112398.367 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2018-12-18T05:53:18.368Z,1545112398.368 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:18.368Z,1545112398.368 [CommandLine](INFO): Join timeout helper Thread ID is 865
2018-12-18T05:53:18.384Z,1545112398.384 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2018-12-18T05:53:18.384Z,1545112398.384 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:18.384Z,1545112398.384 [NavChartDb](INFO): Join timeout helper Thread ID is 866
2018-12-18T05:53:18.405Z,1545112398.405 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-12-18T05:53:18.416Z,1545112398.416 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-12-18T05:53:18.428Z,1545112398.428 [MassServo](DEBUG): Initializing MassServo.
2018-12-18T05:53:18.440Z,1545112398.440 [RudderServo](DEBUG): Initializing RudderServo.
2018-12-18T05:53:18.448Z,1545112398.448 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-12-18T05:53:22.416Z,1545112402.416 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:53:22.417Z,1545112402.417 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:22.435Z,1545112402.435 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2018-12-18T05:53:22.436Z,1545112402.436 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:22.436Z,1545112402.436 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 867
2018-12-18T05:53:22.884Z,1545112402.884 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:53:22.884Z,1545112402.884 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:22.896Z,1545112402.896 [ComponentRegistry](INFO): Shutting down CTD_NeilBrown ThreadHandler
2018-12-18T05:53:22.896Z,1545112402.896 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:22.896Z,1545112402.896 [CTD_NeilBrown](INFO): Join timeout helper Thread ID is 868
2018-12-18T05:53:22.900Z,1545112402.900 [CTD_NeilBrown ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:53:22.900Z,1545112402.900 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:22.912Z,1545112402.912 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2018-12-18T05:53:22.912Z,1545112402.912 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:22.912Z,1545112402.912 [logger](INFO): Join timeout helper Thread ID is 869
2018-12-18T05:53:22.955Z,1545112402.955 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:53:22.955Z,1545112402.955 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:22.972Z,1545112402.972 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2018-12-18T05:53:22.972Z,1545112402.972 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:22.973Z,1545112402.973 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2018-12-18T05:53:22.973Z,1545112402.973 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:22.973Z,1545112402.973 [controlThread](INFO): Join timeout helper Thread ID is 870
2018-12-18T05:53:23.316Z,1545112403.316 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:53:23.316Z,1545112403.316 [controlThread](DEBUG): Uninitializing ControlThread
2018-12-18T05:53:23.317Z,1545112403.317 [DepthRateCalculator](DEBUG): Uninitializing DepthRateCalculator.
2018-12-18T05:53:23.318Z,1545112403.318 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2018-12-18T05:53:23.318Z,1545112403.318 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2018-12-18T05:53:23.319Z,1545112403.319 [MissionManager](INFO): Uninitializing Mission Default
2018-12-18T05:53:23.321Z,1545112403.321 [MissionManager](INFO): Uninitializing Mission Startup
2018-12-18T05:53:23.322Z,1545112403.322 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2018-12-18T05:53:23.322Z,1545112403.322 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2018-12-18T05:53:23.323Z,1545112403.323 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2018-12-18T05:53:23.323Z,1545112403.323 [BackSeatDriver](DEBUG): Uninitialize BackSeatDriver Component.
2018-12-18T05:53:23.323Z,1545112403.323 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2018-12-18T05:53:23.323Z,1545112403.323 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-12-18T05:53:23.324Z,1545112403.324 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2018-12-18T05:53:23.324Z,1545112403.324 [MassServo](DEBUG): Uninitialize Mass Servo.
2018-12-18T05:53:23.324Z,1545112403.324 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2018-12-18T05:53:23.325Z,1545112403.325 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2018-12-18T05:53:23.325Z,1545112403.325 [SBIT](DEBUG): Uninitialize SBIT Component.
2018-12-18T05:53:23.325Z,1545112403.325 [IBIT](DEBUG): Uninitialize IBIT Component.
2018-12-18T05:53:23.326Z,1545112403.326 [CBIT](DEBUG): Uninitialize CBIT Component.
2018-12-18T05:53:23.326Z,1545112403.326 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:23.371Z,1545112403.371 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:23.374Z,1545112403.374 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:23.415Z,1545112403.415 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:53:23.461Z,1545112403.461 [logger ThreadHandler](INFO): Thread cancelled.