2018-12-18T05:51:55.509Z,1545112315.509 [Supervisor](DEBUG): Initializing supervisor.
2018-12-18T05:51:55.512Z,1545112315.512 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-12-18T05:51:55.512Z,1545112315.512 [SyncHandler](INFO): Protected caller Thread ID is 811
2018-12-18T05:51:55.513Z,1545112315.513 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-12-18T05:51:55.514Z,1545112315.514 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-12-18T05:51:55.514Z,1545112315.514 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 812
2018-12-18T05:51:55.517Z,1545112315.517 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-12-18T05:51:55.528Z,1545112315.528 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-12-18T05:51:55.529Z,1545112315.529 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-12-18T05:51:55.529Z,1545112315.529 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 813
2018-12-18T05:51:55.530Z,1545112315.530 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-12-18T05:51:55.531Z,1545112315.531 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-12-18T05:51:55.532Z,1545112315.532 [logger ThreadHandler](INFO): Protected caller Thread ID is 814
2018-12-18T05:51:55.533Z,1545112315.533 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-12-18T05:51:55.534Z,1545112315.534 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-12-18T05:51:55.538Z,1545112315.538 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-12-18T05:51:55.635Z,1545112315.635 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-12-18T05:51:55.637Z,1545112315.637 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-12-18T05:51:55.735Z,1545112315.735 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-12-18T05:51:55.737Z,1545112315.737 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-12-18T05:51:55.925Z,1545112315.925 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-12-18T05:51:55.927Z,1545112315.927 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-12-18T05:51:56.278Z,1545112316.278 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-12-18T05:51:56.278Z,1545112316.278 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-12-18T05:51:56.594Z,1545112316.594 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-12-18T05:51:56.594Z,1545112316.594 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-12-18T05:51:57.040Z,1545112317.040 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-12-18T05:51:57.042Z,1545112317.042 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-12-18T05:51:57.505Z,1545112317.505 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-12-18T05:51:57.506Z,1545112317.506 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-12-18T05:51:57.946Z,1545112317.946 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-12-18T05:51:57.948Z,1545112317.948 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-12-18T05:51:58.030Z,1545112318.030 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-12-18T05:51:58.333Z,1545112318.333 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-12-18T05:51:58.335Z,1545112318.335 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-12-18T05:51:58.479Z,1545112318.479 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-12-18T05:51:58.480Z,1545112318.480 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-12-18T05:51:58.694Z,1545112318.694 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-12-18T05:51:58.695Z,1545112318.695 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-12-18T05:51:58.895Z,1545112318.895 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-12-18T05:51:58.896Z,1545112318.896 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-12-18T05:51:59.027Z,1545112319.027 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-12-18T05:51:59.028Z,1545112319.028 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-12-18T05:51:59.619Z,1545112319.619 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-12-18T05:51:59.621Z,1545112319.621 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-INSERTREALNAME/
2018-12-18T05:51:59.621Z,1545112319.621 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2018-12-18T05:51:59.631Z,1545112319.631 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-12-18T05:51:59.824Z,1545112319.824 [InternalSim] Loaded
2018-12-18T05:51:59.824Z,1545112319.824 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2018-12-18T05:51:59.824Z,1545112319.824 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-12-18T05:51:59.825Z,1545112319.825 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-12-18T05:51:59.849Z,1545112319.849 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-12-18T05:51:59.849Z,1545112319.849 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-12-18T05:51:59.903Z,1545112319.903 [DepthRateCalculator] Loaded
2018-12-18T05:51:59.903Z,1545112319.903 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-12-18T05:51:59.908Z,1545112319.908 [PitchRateCalculator] Loaded
2018-12-18T05:51:59.909Z,1545112319.909 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-12-18T05:51:59.923Z,1545112319.923 [SpeedCalculator] Loaded
2018-12-18T05:51:59.924Z,1545112319.924 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-12-18T05:51:59.944Z,1545112319.944 [TempGradientCalculator] Loaded
2018-12-18T05:51:59.944Z,1545112319.944 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-12-18T05:51:59.949Z,1545112319.949 [YawRateCalculator] Loaded
2018-12-18T05:51:59.949Z,1545112319.949 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-12-18T05:51:59.987Z,1545112319.987 [ElevatorOffsetCalculator] Loaded
2018-12-18T05:51:59.988Z,1545112319.988 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-12-18T05:51:59.988Z,1545112319.988 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-12-18T05:51:59.989Z,1545112319.989 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-12-18T05:52:00.029Z,1545112320.029 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-12-18T05:52:00.030Z,1545112320.030 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-12-18T05:52:00.202Z,1545112320.202 [Module Loader](ERROR): Cannot load library: libboost_system.so.1.63.0: cannot open shared object file: No such file or directory
2018-12-18T05:52:00.203Z,1545112320.203 [Module Loader](ERROR): Could not load the module at Modules/Sensor.so
2018-12-18T05:52:00.204Z,1545112320.204 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-12-18T05:52:00.362Z,1545112320.362 [SBIT](DEBUG): Construct Startup Built In Test.
2018-12-18T05:52:00.386Z,1545112320.386 [SBIT] Loaded
2018-12-18T05:52:00.386Z,1545112320.386 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-12-18T05:52:00.387Z,1545112320.387 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-12-18T05:52:00.413Z,1545112320.413 [IBIT] Loaded
2018-12-18T05:52:00.413Z,1545112320.413 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-12-18T05:52:00.416Z,1545112320.416 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-12-18T05:52:00.780Z,1545112320.780 [CBIT] Loaded
2018-12-18T05:52:00.781Z,1545112320.781 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-12-18T05:52:00.781Z,1545112320.781 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-12-18T05:52:00.782Z,1545112320.782 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-12-18T05:52:01.093Z,1545112321.093 [CTD_NeilBrown] Loaded
2018-12-18T05:52:01.094Z,1545112321.094 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2018-12-18T05:52:01.095Z,1545112321.095 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4064D4E0
2018-12-18T05:52:01.095Z,1545112321.095 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 860
2018-12-18T05:52:01.109Z,1545112321.109 [PAR_Licor] Loaded
2018-12-18T05:52:01.109Z,1545112321.109 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-12-18T05:52:01.156Z,1545112321.156 [WetLabsBB2FL] Loaded
2018-12-18T05:52:01.156Z,1545112321.156 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-12-18T05:52:01.157Z,1545112321.157 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 4067D4E0
2018-12-18T05:52:01.157Z,1545112321.157 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 861
2018-12-18T05:52:01.158Z,1545112321.158 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-12-18T05:52:01.159Z,1545112321.159 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-12-18T05:52:01.432Z,1545112321.432 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-12-18T05:52:01.433Z,1545112321.433 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-12-18T05:52:01.521Z,1545112321.521 [VerticalControl](DEBUG): Construct VerticalControl.
2018-12-18T05:52:01.607Z,1545112321.607 [VerticalControl] Loaded
2018-12-18T05:52:01.607Z,1545112321.607 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-12-18T05:52:01.608Z,1545112321.608 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-12-18T05:52:01.661Z,1545112321.661 [HorizontalControl] Loaded
2018-12-18T05:52:01.662Z,1545112321.662 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-12-18T05:52:01.662Z,1545112321.662 [SpeedControl](DEBUG): Construct SpeedControl.
2018-12-18T05:52:01.664Z,1545112321.664 [SpeedControl] Loaded
2018-12-18T05:52:01.664Z,1545112321.664 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-12-18T05:52:01.665Z,1545112321.665 [BackSeatDriver](DEBUG): Construct BackSeatDriver.
2018-12-18T05:52:01.667Z,1545112321.667 [BackSeatDriver] Loaded
2018-12-18T05:52:01.667Z,1545112321.667 [ComponentRegistry](DEBUG): SyncComponent "BackSeatDriver" handled in the control thread.
2018-12-18T05:52:01.668Z,1545112321.668 [LoopControl](DEBUG): Construct LoopControl.
2018-12-18T05:52:01.668Z,1545112321.668 [LoopControl] Loaded
2018-12-18T05:52:01.668Z,1545112321.668 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-12-18T05:52:01.669Z,1545112321.669 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-12-18T05:52:01.669Z,1545112321.669 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-12-18T05:52:01.770Z,1545112321.770 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-12-18T05:52:01.771Z,1545112321.771 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-12-18T05:52:01.885Z,1545112321.885 [BuoyancyServo] Loaded
2018-12-18T05:52:01.886Z,1545112321.886 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-12-18T05:52:01.896Z,1545112321.896 [ElevatorServo] Loaded
2018-12-18T05:52:01.897Z,1545112321.897 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-12-18T05:52:01.907Z,1545112321.907 [MassServo] Loaded
2018-12-18T05:52:01.907Z,1545112321.907 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-12-18T05:52:01.918Z,1545112321.918 [RudderServo] Loaded
2018-12-18T05:52:01.918Z,1545112321.918 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-12-18T05:52:01.929Z,1545112321.929 [ThrusterServo] Loaded
2018-12-18T05:52:01.929Z,1545112321.929 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-12-18T05:52:01.929Z,1545112321.929 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-12-18T05:52:01.930Z,1545112321.930 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-12-18T05:52:02.047Z,1545112322.047 [DeadReckonUsingMultipleVelocitySources] Loaded
2018-12-18T05:52:02.047Z,1545112322.047 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2018-12-18T05:52:02.105Z,1545112322.105 [DeadReckonUsingSpeedCalculator] Loaded
2018-12-18T05:52:02.105Z,1545112322.105 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-12-18T05:52:02.121Z,1545112322.121 [NavChart] Loaded
2018-12-18T05:52:02.121Z,1545112322.121 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-12-18T05:52:02.125Z,1545112322.125 [UniversalFixResidualReporter] Loaded
2018-12-18T05:52:02.126Z,1545112322.126 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-12-18T05:52:02.126Z,1545112322.126 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-12-18T05:52:02.129Z,1545112322.129 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-12-18T05:52:02.130Z,1545112322.130 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-12-18T05:52:02.137Z,1545112322.137 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-12-18T05:52:02.138Z,1545112322.138 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 407D74E0
2018-12-18T05:52:02.138Z,1545112322.138 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 862
2018-12-18T05:52:02.143Z,1545112322.143 [Supervisor](INFO): Main Thread ID is 807
2018-12-18T05:52:02.143Z,1545112322.143 [Supervisor](DEBUG): Running supervisor.
2018-12-18T05:52:02.143Z,1545112322.143 [CommandLine ThreadHandler](INFO): Handler Thread ID is 863
2018-12-18T05:52:02.146Z,1545112322.146 [controlThread ThreadHandler](INFO): Handler Thread ID is 864
2018-12-18T05:52:02.146Z,1545112322.146 [controlThread](DEBUG): Initializing ControlThread
2018-12-18T05:52:02.147Z,1545112322.147 [InternalSim](DEBUG):  InternalSim initializing...
2018-12-18T05:52:02.153Z,1545112322.153 [InternalSim](DEBUG): oceanModelVarCount=0
2018-12-18T05:52:02.211Z,1545112322.211 [logger ThreadHandler](INFO): Handler Thread ID is 865
2018-12-18T05:52:02.263Z,1545112322.263 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 866
2018-12-18T05:52:02.266Z,1545112322.266 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-12-18T05:52:02.267Z,1545112322.267 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-12-18T05:52:02.267Z,1545112322.267 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-12-18T05:52:02.267Z,1545112322.267 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-12-18T05:52:02.268Z,1545112322.268 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-12-18T05:52:02.269Z,1545112322.269 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 867
2018-12-18T05:52:02.270Z,1545112322.270 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-12-18T05:52:02.271Z,1545112322.271 [SBIT](INFO): Initialize SBIT Component.
2018-12-18T05:52:02.271Z,1545112322.271 [SBIT](IMPORTANT): git: 2018-12-13
2018-12-18T05:52:02.271Z,1545112322.271 [SBIT](INFO): git hash: 8200dc43e6ef01082c531ff0fab84136a371dc2d
2018-12-18T05:52:02.273Z,1545112322.273 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2018-12-18T05:52:02.273Z,1545112322.273 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #7 PREEMPT Mon Dec 17 14:09:40 PST 2018
2018-12-18T05:52:02.274Z,1545112322.274 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2018-12-18T05:52:02.277Z,1545112322.277 [IBIT](INFO): Initialize IBIT Component.
2018-12-18T05:52:02.278Z,1545112322.278 [CBIT](DEBUG): Initialize CBIT Component.
2018-12-18T05:52:02.288Z,1545112322.288 [CBIT](DEBUG): Initialized mux pins.
2018-12-18T05:52:02.288Z,1545112322.288 [CBIT](DEBUG): Initializing the watchdog timer.
2018-12-18T05:52:02.289Z,1545112322.289 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 868
2018-12-18T05:52:02.297Z,1545112322.297 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-12-18T05:52:02.298Z,1545112322.298 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2018-12-18T05:52:02.298Z,1545112322.298 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-12-18T05:52:02.298Z,1545112322.298 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2018-12-18T05:52:02.298Z,1545112322.298 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-12-18T05:52:02.298Z,1545112322.298 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2018-12-18T05:52:02.298Z,1545112322.298 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-12-18T05:52:02.299Z,1545112322.299 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2018-12-18T05:52:02.299Z,1545112322.299 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-12-18T05:52:02.299Z,1545112322.299 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2018-12-18T05:52:02.299Z,1545112322.299 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-12-18T05:52:02.299Z,1545112322.299 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2018-12-18T05:52:02.300Z,1545112322.300 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-12-18T05:52:02.300Z,1545112322.300 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2018-12-18T05:52:02.300Z,1545112322.300 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-12-18T05:52:02.300Z,1545112322.300 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2018-12-18T05:52:02.312Z,1545112322.312 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-12-18T05:52:02.313Z,1545112322.313 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-12-18T05:52:02.315Z,1545112322.315 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-12-18T05:52:02.316Z,1545112322.316 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-12-18T05:52:02.316Z,1545112322.316 [BackSeatDriver](DEBUG): Initialize BackSeatDriver Component.
2018-12-18T05:52:02.621Z,1545112322.621 [CTD_NeilBrown](DEBUG): Initializing CTD_NeilBrown.
2018-12-18T05:52:02.956Z,1545112322.956 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-12-18T05:52:02.958Z,1545112322.958 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2018-12-18T05:52:02.958Z,1545112322.958 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T05:52:02.959Z,1545112322.959 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T05:52:02.959Z,1545112322.959 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-18T05:52:02.960Z,1545112322.960 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T05:52:02.960Z,1545112322.960 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T05:52:02.970Z,1545112322.970 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-12-18T05:52:02.970Z,1545112322.970 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-12-18T05:52:02.971Z,1545112322.971 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-12-18T05:52:03.011Z,1545112323.011 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-18T05:52:03.048Z,1545112323.048 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-12-18T05:52:03.049Z,1545112323.049 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-12-18T05:52:03.136Z,1545112323.136 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-12-18T05:52:03.137Z,1545112323.137 [Default:A.Wait](DEBUG): Construct Wait.
2018-12-18T05:52:03.138Z,1545112323.138 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-18T05:52:03.191Z,1545112323.191 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-12-18T05:52:03.193Z,1545112323.193 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-12-18T05:52:03.219Z,1545112323.219 [Default:E.Execute](DEBUG): Construct Execute.
2018-12-18T05:52:03.223Z,1545112323.223 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-12-18T05:52:03.232Z,1545112323.232 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,PAR_Licor,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,YawRateCalculator,ElevatorOffsetCalculator,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,BackSeatDriver,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-12-18T05:52:03.529Z,1545112323.529 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-12-18T05:52:03.544Z,1545112323.544 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-12-18T05:52:03.556Z,1545112323.556 [MassServo](DEBUG): Initializing MassServo.
2018-12-18T05:52:03.569Z,1545112323.569 [RudderServo](DEBUG): Initializing RudderServo.
2018-12-18T05:52:03.580Z,1545112323.580 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-12-18T05:52:05.162Z,1545112325.162 [CommandLine](IMPORTANT): got command quit
2018-12-18T05:52:06.168Z,1545112326.168 [Supervisor](INFO): Stop Mission called by Supervisor::terminate
2018-12-18T05:52:06.171Z,1545112326.171 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:52:06.171Z,1545112326.171 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:06.172Z,1545112326.172 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2018-12-18T05:52:06.172Z,1545112326.172 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:06.173Z,1545112326.173 [CommandLine](INFO): Join timeout helper Thread ID is 871
2018-12-18T05:52:06.188Z,1545112326.188 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2018-12-18T05:52:06.188Z,1545112326.188 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:06.189Z,1545112326.189 [NavChartDb](INFO): Join timeout helper Thread ID is 872
2018-12-18T05:52:07.484Z,1545112327.484 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:52:07.496Z,1545112327.496 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:07.504Z,1545112327.504 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2018-12-18T05:52:07.504Z,1545112327.504 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:07.505Z,1545112327.505 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 873
2018-12-18T05:52:07.816Z,1545112327.816 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:52:07.817Z,1545112327.817 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:07.820Z,1545112327.820 [ComponentRegistry](INFO): Shutting down CTD_NeilBrown ThreadHandler
2018-12-18T05:52:07.820Z,1545112327.820 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:07.821Z,1545112327.821 [CTD_NeilBrown](INFO): Join timeout helper Thread ID is 874
2018-12-18T05:52:07.924Z,1545112327.924 [CTD_NeilBrown ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:52:07.925Z,1545112327.925 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:07.932Z,1545112327.932 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2018-12-18T05:52:07.932Z,1545112327.932 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:07.933Z,1545112327.933 [logger](INFO): Join timeout helper Thread ID is 875
2018-12-18T05:52:07.938Z,1545112327.938 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:52:07.938Z,1545112327.938 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:07.939Z,1545112327.939 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2018-12-18T05:52:07.940Z,1545112327.940 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:07.940Z,1545112327.940 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2018-12-18T05:52:07.940Z,1545112327.940 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:07.940Z,1545112327.940 [controlThread](INFO): Join timeout helper Thread ID is 876
2018-12-18T05:52:08.060Z,1545112328.060 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T05:52:08.061Z,1545112328.061 [controlThread](DEBUG): Uninitializing ControlThread
2018-12-18T05:52:08.062Z,1545112328.062 [DepthRateCalculator](DEBUG): Uninitializing DepthRateCalculator.
2018-12-18T05:52:08.063Z,1545112328.063 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2018-12-18T05:52:08.063Z,1545112328.063 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2018-12-18T05:52:08.064Z,1545112328.064 [MissionManager](INFO): Uninitializing Mission Default
2018-12-18T05:52:08.066Z,1545112328.066 [MissionManager](INFO): Uninitializing Mission Startup
2018-12-18T05:52:08.067Z,1545112328.067 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2018-12-18T05:52:08.067Z,1545112328.067 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2018-12-18T05:52:08.067Z,1545112328.067 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2018-12-18T05:52:08.068Z,1545112328.068 [BackSeatDriver](DEBUG): Uninitialize BackSeatDriver Component.
2018-12-18T05:52:08.068Z,1545112328.068 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2018-12-18T05:52:08.068Z,1545112328.068 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-12-18T05:52:08.069Z,1545112328.069 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2018-12-18T05:52:08.069Z,1545112328.069 [MassServo](DEBUG): Uninitialize Mass Servo.
2018-12-18T05:52:08.069Z,1545112328.069 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2018-12-18T05:52:08.069Z,1545112328.069 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2018-12-18T05:52:08.070Z,1545112328.070 [SBIT](DEBUG): Uninitialize SBIT Component.
2018-12-18T05:52:08.070Z,1545112328.070 [IBIT](DEBUG): Uninitialize IBIT Component.
2018-12-18T05:52:08.070Z,1545112328.070 [CBIT](DEBUG): Uninitialize CBIT Component.
2018-12-18T05:52:08.071Z,1545112328.071 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:08.119Z,1545112328.119 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:08.123Z,1545112328.123 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:08.163Z,1545112328.163 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T05:52:08.209Z,1545112328.209 [logger ThreadHandler](INFO): Thread cancelled.