2018-09-13T18:53:24.298Z,1536864804.298 [Supervisor](DEBUG): Initializing supervisor.
2018-09-13T18:53:24.302Z,1536864804.302 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-09-13T18:53:24.303Z,1536864804.303 [SyncHandler](INFO): Protected caller Thread ID is 797
2018-09-13T18:53:24.304Z,1536864804.304 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-09-13T18:53:24.306Z,1536864804.306 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-09-13T18:53:24.307Z,1536864804.307 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 798
2018-09-13T18:53:24.314Z,1536864804.314 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-09-13T18:53:24.328Z,1536864804.328 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-09-13T18:53:24.329Z,1536864804.329 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-09-13T18:53:24.330Z,1536864804.330 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 799
2018-09-13T18:53:24.332Z,1536864804.332 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-09-13T18:53:24.334Z,1536864804.334 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-09-13T18:53:24.335Z,1536864804.335 [logger ThreadHandler](INFO): Protected caller Thread ID is 800
2018-09-13T18:53:24.340Z,1536864804.340 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-09-13T18:53:24.340Z,1536864804.340 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-09-13T18:53:24.346Z,1536864804.346 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-09-13T18:53:24.479Z,1536864804.479 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-09-13T18:53:24.481Z,1536864804.481 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-09-13T18:53:24.601Z,1536864804.601 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-09-13T18:53:24.603Z,1536864804.603 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-09-13T18:53:24.849Z,1536864804.849 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-09-13T18:53:24.851Z,1536864804.851 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-09-13T18:53:25.254Z,1536864805.254 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-09-13T18:53:25.255Z,1536864805.255 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-09-13T18:53:25.676Z,1536864805.676 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-09-13T18:53:25.677Z,1536864805.677 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-09-13T18:53:26.234Z,1536864806.234 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-09-13T18:53:26.235Z,1536864806.235 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-09-13T18:53:26.769Z,1536864806.769 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-09-13T18:53:26.770Z,1536864806.770 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-09-13T18:53:27.404Z,1536864807.404 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-09-13T18:53:27.406Z,1536864807.406 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-09-13T18:53:27.511Z,1536864807.511 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-09-13T18:53:27.910Z,1536864807.910 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-09-13T18:53:27.912Z,1536864807.912 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-09-13T18:53:28.083Z,1536864808.083 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-09-13T18:53:28.084Z,1536864808.084 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-09-13T18:53:28.324Z,1536864808.324 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-09-13T18:53:28.326Z,1536864808.326 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-09-13T18:53:28.576Z,1536864808.576 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-09-13T18:53:28.577Z,1536864808.577 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-09-13T18:53:28.703Z,1536864808.703 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-09-13T18:53:28.704Z,1536864808.704 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-09-13T18:53:28.877Z,1536864808.877 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-09-13T18:53:28.879Z,1536864808.879 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-makai/
2018-09-13T18:53:28.881Z,1536864808.881 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Battery.cfg
2018-09-13T18:53:29.149Z,1536864809.149 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2018-09-13T18:53:29.149Z,1536864809.149 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/logger.cfg
2018-09-13T18:53:29.274Z,1536864809.274 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Science.cfg
2018-09-13T18:53:29.440Z,1536864809.440 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Control.cfg
2018-09-13T18:53:29.555Z,1536864809.555 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Simulator.cfg
2018-09-13T18:53:29.651Z,1536864809.651 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Sensor.cfg
2018-09-13T18:53:29.825Z,1536864809.825 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/vehicle.cfg
2018-09-13T18:53:30.033Z,1536864810.033 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Servo.cfg
2018-09-13T18:53:30.152Z,1536864810.152 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Navigation.cfg
2018-09-13T18:53:30.270Z,1536864810.270 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/goby.cfg
2018-09-13T18:53:30.373Z,1536864810.373 [ComponentRegistry](DEBUG): Loaded Config Component "Config/goby
2018-09-13T18:53:30.373Z,1536864810.373 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/BIT.cfg
2018-09-13T18:53:30.497Z,1536864810.497 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/secure.cfg
2018-09-13T18:53:30.583Z,1536864810.583 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2018-09-13T18:53:30.585Z,1536864810.585 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-09-13T18:53:30.714Z,1536864810.714 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-09-13T18:53:30.715Z,1536864810.715 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-09-13T18:53:30.739Z,1536864810.739 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-09-13T18:53:30.739Z,1536864810.739 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-09-13T18:53:30.796Z,1536864810.796 [DepthRateCalculator] Loaded
2018-09-13T18:53:30.796Z,1536864810.796 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-09-13T18:53:30.802Z,1536864810.802 [PitchRateCalculator] Loaded
2018-09-13T18:53:30.803Z,1536864810.803 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-09-13T18:53:30.819Z,1536864810.819 [SpeedCalculator] Loaded
2018-09-13T18:53:30.819Z,1536864810.819 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-09-13T18:53:30.841Z,1536864810.841 [TempGradientCalculator] Loaded
2018-09-13T18:53:30.841Z,1536864810.841 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-09-13T18:53:30.857Z,1536864810.857 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2018-09-13T18:53:30.857Z,1536864810.857 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2018-09-13T18:53:30.863Z,1536864810.863 [YawRateCalculator] Loaded
2018-09-13T18:53:30.863Z,1536864810.863 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-09-13T18:53:30.905Z,1536864810.905 [ElevatorOffsetCalculator] Loaded
2018-09-13T18:53:30.905Z,1536864810.905 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-09-13T18:53:30.905Z,1536864810.905 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-09-13T18:53:30.906Z,1536864810.906 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-09-13T18:53:30.944Z,1536864810.944 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-09-13T18:53:30.945Z,1536864810.945 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-09-13T18:53:42.697Z,1536864822.697 [AcousticModem_Benthos_ATM900] Loaded
2018-09-13T18:53:42.698Z,1536864822.698 [ComponentRegistry](DEBUG): SyncComponent "AcousticModem_Benthos_ATM900" handled in the control thread.
2018-09-13T18:53:42.842Z,1536864822.842 [DataOverHttps] Loaded
2018-09-13T18:53:42.843Z,1536864822.843 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2018-09-13T18:53:42.856Z,1536864822.856 [Depth_Keller] Loaded
2018-09-13T18:53:42.857Z,1536864822.857 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2018-09-13T18:53:42.861Z,1536864822.861 [DropWeight] Loaded
2018-09-13T18:53:42.862Z,1536864822.862 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2018-09-13T18:53:42.871Z,1536864822.871 [GobyModem] Loaded
2018-09-13T18:53:42.871Z,1536864822.871 [ComponentRegistry](DEBUG): SyncComponent "GobyModem" handled in the control thread.
2018-09-13T18:53:42.972Z,1536864822.972 [NAL9602] Loaded
2018-09-13T18:53:42.972Z,1536864822.972 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2018-09-13T18:53:42.988Z,1536864822.988 [Onboard] Loaded
2018-09-13T18:53:42.989Z,1536864822.989 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2018-09-13T18:53:42.999Z,1536864822.999 [Radio_Surface] Loaded
2018-09-13T18:53:42.999Z,1536864822.999 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2018-09-13T18:53:43.000Z,1536864823.000 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 419CB4E0
2018-09-13T18:53:43.001Z,1536864823.001 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 883
2018-09-13T18:53:43.155Z,1536864823.155 [PNI_TCM] Loaded
2018-09-13T18:53:43.156Z,1536864823.156 [ComponentRegistry](DEBUG): SyncComponent "PNI_TCM" handled in the control thread.
2018-09-13T18:53:43.217Z,1536864823.217 [Rowe_600LCM] Loaded
2018-09-13T18:53:43.218Z,1536864823.218 [ComponentRegistry](DEBUG): Component "Rowe_600LCM" handled in its own thread.
2018-09-13T18:53:43.219Z,1536864823.219 [Rowe_600LCM ThreadHandler](DEBUG): Created PCaller Thread at 419FB4E0
2018-09-13T18:53:43.219Z,1536864823.219 [Rowe_600LCM ThreadHandler](INFO): Protected caller Thread ID is 884
2018-09-13T18:53:45.018Z,1536864825.018 [BPC1] Loaded
2018-09-13T18:53:45.018Z,1536864825.018 [ComponentRegistry](DEBUG): SyncComponent "BPC1" handled in the control thread.
2018-09-13T18:53:45.019Z,1536864825.019 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2018-09-13T18:53:45.021Z,1536864825.021 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-09-13T18:53:45.177Z,1536864825.177 [SBIT](DEBUG): Construct Startup Built In Test.
2018-09-13T18:53:45.201Z,1536864825.201 [SBIT] Loaded
2018-09-13T18:53:45.201Z,1536864825.201 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-09-13T18:53:45.202Z,1536864825.202 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-09-13T18:53:45.213Z,1536864825.213 [IBIT] Loaded
2018-09-13T18:53:45.214Z,1536864825.214 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-09-13T18:53:45.217Z,1536864825.217 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-09-13T18:53:45.372Z,1536864825.372 [CBIT] Loaded
2018-09-13T18:53:45.372Z,1536864825.372 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-09-13T18:53:45.372Z,1536864825.372 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-09-13T18:53:45.373Z,1536864825.373 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-09-13T18:53:45.564Z,1536864825.564 [Aanderaa_O2] Loaded
2018-09-13T18:53:45.565Z,1536864825.565 [ComponentRegistry](DEBUG): SyncComponent "Aanderaa_O2" handled in the control thread.
2018-09-13T18:53:45.582Z,1536864825.582 [ESPComponent] Loaded
2018-09-13T18:53:45.583Z,1536864825.583 [ComponentRegistry](DEBUG): SyncComponent "ESPComponent" handled in the control thread.
2018-09-13T18:53:45.597Z,1536864825.597 [PAR_Licor] Loaded
2018-09-13T18:53:45.598Z,1536864825.598 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-09-13T18:53:45.648Z,1536864825.648 [WetLabsBB2FL] Loaded
2018-09-13T18:53:45.649Z,1536864825.649 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-09-13T18:53:45.650Z,1536864825.650 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 41ABF4E0
2018-09-13T18:53:45.650Z,1536864825.650 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 885
2018-09-13T18:53:45.651Z,1536864825.651 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-09-13T18:53:45.651Z,1536864825.651 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-09-13T18:53:45.930Z,1536864825.930 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-09-13T18:53:45.931Z,1536864825.931 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-09-13T18:53:46.022Z,1536864826.022 [VerticalControl](DEBUG): Construct VerticalControl.
2018-09-13T18:53:46.119Z,1536864826.119 [VerticalControl] Loaded
2018-09-13T18:53:46.119Z,1536864826.119 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-09-13T18:53:46.120Z,1536864826.120 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-09-13T18:53:46.182Z,1536864826.182 [HorizontalControl] Loaded
2018-09-13T18:53:46.182Z,1536864826.182 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-09-13T18:53:46.183Z,1536864826.183 [SpeedControl](DEBUG): Construct SpeedControl.
2018-09-13T18:53:46.189Z,1536864826.189 [SpeedControl] Loaded
2018-09-13T18:53:46.189Z,1536864826.189 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-09-13T18:53:46.190Z,1536864826.190 [LoopControl](DEBUG): Construct LoopControl.
2018-09-13T18:53:46.190Z,1536864826.190 [LoopControl] Loaded
2018-09-13T18:53:46.191Z,1536864826.191 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-09-13T18:53:46.191Z,1536864826.191 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-09-13T18:53:46.192Z,1536864826.192 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-09-13T18:53:46.313Z,1536864826.313 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2018-09-13T18:53:46.313Z,1536864826.313 [StratificationFrontDetector](DEBUG): (re)initializing
2018-09-13T18:53:46.314Z,1536864826.314 [StratificationFrontDetector] Loaded
2018-09-13T18:53:46.314Z,1536864826.314 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2018-09-13T18:53:46.315Z,1536864826.315 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-09-13T18:53:46.315Z,1536864826.315 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-09-13T18:53:46.436Z,1536864826.436 [BuoyancyServo] Loaded
2018-09-13T18:53:46.436Z,1536864826.436 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-09-13T18:53:46.448Z,1536864826.448 [ElevatorServo] Loaded
2018-09-13T18:53:46.448Z,1536864826.448 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-09-13T18:53:46.460Z,1536864826.460 [MassServo] Loaded
2018-09-13T18:53:46.460Z,1536864826.460 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-09-13T18:53:46.471Z,1536864826.471 [RudderServo] Loaded
2018-09-13T18:53:46.472Z,1536864826.472 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-09-13T18:53:46.483Z,1536864826.483 [ThrusterServo] Loaded
2018-09-13T18:53:46.483Z,1536864826.483 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-09-13T18:53:46.484Z,1536864826.484 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-09-13T18:53:46.484Z,1536864826.484 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-09-13T18:53:46.592Z,1536864826.592 [DeadReckonUsingSpeedCalculator] Loaded
2018-09-13T18:53:46.593Z,1536864826.593 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-09-13T18:53:46.609Z,1536864826.609 [NavChart] Loaded
2018-09-13T18:53:46.609Z,1536864826.609 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-09-13T18:53:46.614Z,1536864826.614 [UniversalFixResidualReporter] Loaded
2018-09-13T18:53:46.614Z,1536864826.614 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-09-13T18:53:46.614Z,1536864826.614 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-09-13T18:53:46.618Z,1536864826.618 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-09-13T18:53:46.619Z,1536864826.619 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-09-13T18:53:46.626Z,1536864826.626 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-09-13T18:53:46.627Z,1536864826.627 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 41C184E0
2018-09-13T18:53:46.627Z,1536864826.627 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 886
2018-09-13T18:53:46.632Z,1536864826.632 [Supervisor](INFO): Main Thread ID is 796
2018-09-13T18:53:46.632Z,1536864826.632 [Supervisor](DEBUG): Running supervisor.
2018-09-13T18:53:46.633Z,1536864826.633 [CommandLine ThreadHandler](INFO): Handler Thread ID is 887
2018-09-13T18:53:46.635Z,1536864826.635 [controlThread ThreadHandler](INFO): Handler Thread ID is 888
2018-09-13T18:53:46.635Z,1536864826.635 [controlThread](DEBUG): Initializing ControlThread
2018-09-13T18:53:46.636Z,1536864826.636 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-09-13T18:53:46.637Z,1536864826.637 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-09-13T18:53:46.637Z,1536864826.637 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-09-13T18:53:46.637Z,1536864826.637 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-09-13T18:53:46.638Z,1536864826.638 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2018-09-13T18:53:46.639Z,1536864826.639 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-09-13T18:53:46.639Z,1536864826.639 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-09-13T18:53:46.658Z,1536864826.658 [logger ThreadHandler](INFO): Handler Thread ID is 889
2018-09-13T18:53:46.686Z,1536864826.686 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 890
2018-09-13T18:53:46.692Z,1536864826.692 [Radio_Surface](INFO): Powering up
2018-09-13T18:53:46.706Z,1536864826.706 [Rowe_600LCM ThreadHandler](INFO): Handler Thread ID is 891
2018-09-13T18:53:46.707Z,1536864826.707 [Rowe_600LCM](INFO): Initializing
2018-09-13T18:53:46.708Z,1536864826.708 [Rowe_600LCM](INFO): Checking LCM
2018-09-13T18:53:46.909Z,1536864826.909 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 892
2018-09-13T18:53:46.910Z,1536864826.910 [WetLabsBB2FL](INFO): Powering down
2018-09-13T18:53:47.006Z,1536864827.006 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 893
2018-09-13T18:53:47.014Z,1536864827.014 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4MI11M.000
2018-09-13T18:53:47.014Z,1536864827.014 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4MI11M.000
2018-09-13T18:53:47.015Z,1536864827.015 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5MI07M.000
2018-09-13T18:53:47.015Z,1536864827.015 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5MI07M.000
2018-09-13T18:53:47.015Z,1536864827.015 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5OH07M.000
2018-09-13T18:53:47.015Z,1536864827.015 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5OH07M.000
2018-09-13T18:53:47.015Z,1536864827.015 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5OH31M.000
2018-09-13T18:53:47.015Z,1536864827.015 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5OH31M.000
2018-09-13T18:53:47.232Z,1536864827.232 [Rowe_600LCM](INFO): LCM OK
2018-09-13T18:53:47.232Z,1536864827.232 [Rowe_600LCM](INFO): Powering up
2018-09-13T18:53:51.059Z,1536864831.059 [Rowe_600LCM](INFO): Stopping potential previous instance(s) of Rowe LCM interface
2018-09-13T18:53:51.145Z,1536864831.145 [Rowe_600LCM](INFO): Started Rowe LCM interface with command:nohup ./lrauv-framework/onboard/bin/roweadcp -ldir /mnt/mmc/LRAUV/Logs/latest/ -dev /dev/ttyB4 -b 9600 >& /dev/null &
2018-09-13T18:53:51.277Z,1536864831.277 [Rowe_600LCM](INFO): LCM subscribed to channel:Rowe_600LCM.adcp_dvl.bottom_track
2018-09-13T18:53:51.277Z,1536864831.277 [Rowe_600LCM](INFO): LCM subscribed to channel:Rowe_600LCM.adcp_dvl.vehicle_water_velocity
2018-09-13T18:53:51.280Z,1536864831.280 [Rowe_600LCM](INFO): LCM subscribed to channel:rowe_dvl.rowe
2018-09-13T18:55:19.464Z,1536864919.464 [GobyModem](CRITICAL): exception at startup: Failed to startup.
2018-09-13T18:55:19.559Z,1536864919.559 [SBIT](INFO): Initialize SBIT Component.
2018-09-13T18:55:19.560Z,1536864919.560 [SBIT](IMPORTANT): git: 2018-09-06-4-gec17f04
2018-09-13T18:55:19.560Z,1536864919.560 [SBIT](INFO): git hash: ec17f04c03492d554d64019aa93bf1adb3b9dd40
2018-09-13T18:55:19.560Z,1536864919.560 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2018-09-13T18:55:19.562Z,1536864919.562 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #639 PREEMPT Wed Mar 12 12:53:33 PDT 2014
Kernel Reported: #2 PREEMPT Thu Jan 11 20:13:48 PST 2018
2018-09-13T18:55:19.563Z,1536864919.563 [SBIT](INFO): Beginning SBIT in 24.000000 seconds.
2018-09-13T18:55:19.563Z,1536864919.563 [IBIT](INFO): Initialize IBIT Component.
2018-09-13T18:55:19.564Z,1536864919.564 [CBIT](DEBUG): Initialize CBIT Component.
2018-09-13T18:55:19.564Z,1536864919.564 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2018-09-13T18:55:19.564Z,1536864919.564 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-09-13T18:55:19.678Z,1536864919.678 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-09-13T18:55:19.680Z,1536864919.680 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-09-13T18:55:19.681Z,1536864919.681 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-09-13T18:55:19.681Z,1536864919.681 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-09-13T18:55:19.683Z,1536864919.683 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-09-13T18:55:19.684Z,1536864919.684 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-09-13T18:55:19.685Z,1536864919.685 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-09-13T18:55:19.685Z,1536864919.685 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-09-13T18:55:19.685Z,1536864919.685 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-09-13T18:55:19.687Z,1536864919.687 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-09-13T18:55:19.733Z,1536864919.733 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-09-13T18:55:19.767Z,1536864919.767 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-09-13T18:55:19.768Z,1536864919.768 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-09-13T18:55:19.835Z,1536864919.835 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-09-13T18:55:19.836Z,1536864919.836 [Default:A.Wait](DEBUG): Construct Wait.
2018-09-13T18:55:19.837Z,1536864919.837 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-09-13T18:55:19.870Z,1536864919.870 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-09-13T18:55:19.873Z,1536864919.873 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-09-13T18:55:19.887Z,1536864919.887 [Default:E.Execute](DEBUG): Construct Execute.
2018-09-13T18:55:19.895Z,1536864919.895 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-09-13T18:55:19.901Z,1536864919.901 [controlThread](DEBUG): Component order: CycleStarter,AcousticModem_Benthos_ATM900,DataOverHttps,Depth_Keller,DropWeight,GobyModem,NAL9602,Onboard,PNI_TCM,BPC1,Aanderaa_O2,ESPComponent,PAR_Licor,Depth_Keller,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,ElevatorOffsetCalculator,StratificationFrontDetector,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-09-13T18:55:19.922Z,1536864919.922 [AcousticModem_Benthos_ATM900](INFO): Powering up
2018-09-13T18:55:19.922Z,1536864919.922 [AcousticModem_Benthos_ATM900](DEBUG): Initializing AcousticModem_Benthos_ATM900.
2018-09-13T18:55:19.941Z,1536864919.941 [DataOverHttps](DEBUG): dashIP=134.89.2.23 starts with a digit so assuming it is a numeric IP
2018-09-13T18:55:20.024Z,1536864920.024 [NAL9602](INFO): Powering up NAL9602
2018-09-13T18:55:20.173Z,1536864920.173 [ESPComponent](INFO): powering down ESP
2018-09-13T18:55:20.601Z,1536864920.601 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:55:20.710Z,1536864920.710 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:55:20.718Z,1536864920.718 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-09-13T18:55:20.725Z,1536864920.725 [ElevatorServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:55:20.738Z,1536864920.738 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-09-13T18:55:20.745Z,1536864920.745 [MassServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:55:20.750Z,1536864920.750 [MassServo](DEBUG): Initializing MassServo.
2018-09-13T18:55:20.756Z,1536864920.756 [RudderServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:55:20.762Z,1536864920.762 [RudderServo](DEBUG): Initializing RudderServo.
2018-09-13T18:55:20.768Z,1536864920.768 [ThrusterServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:55:20.775Z,1536864920.775 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-09-13T18:55:20.805Z,1536864920.805 [CommandLine](FAULT): Scheduling is paused
2018-09-13T18:55:20.805Z,1536864920.805 [CBIT](INFO): Critical error at 20180913T185519
2018-09-13T18:55:20.805Z,1536864920.805 [Supervisor](INFO): Stop Mission called by CBIT::checkCriticals
2018-09-13T18:55:20.967Z,1536864920.967 [DropWeight](CRITICAL): DROP WEIGHT MISSING.

2018-09-13T18:55:20.968Z,1536864920.968 [DropWeight] Hardware Fault, FailCount= 1
2018-09-13T18:55:20.968Z,1536864920.968 [DropWeight](ERROR): Hardware Fault
2018-09-13T18:55:21.044Z,1536864921.044 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:55:21.067Z,1536864921.067 [CBIT](INFO): Critical error at 20180913T185520
2018-09-13T18:55:21.069Z,1536864921.069 [CBIT](ERROR): Hardware Fault in component: DropWeight
2018-09-13T18:55:21.069Z,1536864921.069 [CBIT](CRITICAL): Hardware Fault in component: DropWeight
2018-09-13T18:55:21.283Z,1536864921.283 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:55:21.626Z,1536864921.626 [BuoyancyServo](ERROR): Buoyancy initialization uart error serial timeout
2018-09-13T18:55:21.626Z,1536864921.626 [BuoyancyServo](FAULT): Buoyancy failed to initialize
2018-09-13T18:55:21.626Z,1536864921.626 [BuoyancyServo] Communications Fault, FailCount= 1
2018-09-13T18:55:21.626Z,1536864921.626 [BuoyancyServo](ERROR): Communications Fault
2018-09-13T18:55:21.836Z,1536864921.836 [CBIT](INFO): Critical error at 20180913T185521
2018-09-13T18:55:21.839Z,1536864921.839 [CBIT](ERROR): Communications Fault in component: BuoyancyServo
2018-09-13T18:55:21.899Z,1536864921.899 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:55:21.906Z,1536864921.906 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-09-13T18:55:21.907Z,1536864921.907 [BuoyancyServo](INFO): Powering down
2018-09-13T18:55:22.304Z,1536864922.304 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:55:22.686Z,1536864922.686 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:55:23.087Z,1536864923.087 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:55:23.650Z,1536864923.650 [Aanderaa_O2](INFO): Powering down
2018-09-13T18:55:23.716Z,1536864923.716 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:55:23.966Z,1536864923.966 [CBIT](INFO): Clearing failed state for component BuoyancyServo
2018-09-13T18:55:23.966Z,1536864923.966 [BuoyancyServo] No Fault, FailCount= 1
2018-09-13T18:55:24.299Z,1536864924.299 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:55:24.427Z,1536864924.427 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-09-13T18:55:30.669Z,1536864930.669 [GobyModem](INFO): Added slot 1
2018-09-13T18:55:30.680Z,1536864930.680 [GobyModem](INFO): Added slot 2
2018-09-13T18:55:30.680Z,1536864930.680 [GobyModem](INFO): Added slot 3
2018-09-13T18:55:32.569Z,1536864932.569 [NAL9602](INFO): NAL9602 initialized
2018-09-13T18:55:36.205Z,1536864936.205 [GobyModem](INFO): {control} starting send from me
2018-09-13T18:55:40.155Z,1536864940.155 [AcousticModem_Benthos_ATM900](FAULT): failed to initialize, no bytes available on serial interface
2018-09-13T18:55:40.155Z,1536864940.155 [AcousticModem_Benthos_ATM900] Communications Fault, FailCount= 1
2018-09-13T18:55:40.155Z,1536864940.155 [AcousticModem_Benthos_ATM900](ERROR): Communications Fault
2018-09-13T18:55:40.246Z,1536864940.246 [CBIT](ERROR): Communications Fault in component: AcousticModem_Benthos_ATM900
2018-09-13T18:55:40.556Z,1536864940.556 [AcousticModem_Benthos_ATM900](INFO): Powering down
2018-09-13T18:55:41.508Z,1536864941.508 [CBIT](INFO): Clearing failed state for component AcousticModem_Benthos_ATM900
2018-09-13T18:55:41.509Z,1536864941.509 [AcousticModem_Benthos_ATM900] No Fault, FailCount= 1
2018-09-13T18:55:43.757Z,1536864943.757 [AcousticModem_Benthos_ATM900](INFO): Powering up
2018-09-13T18:55:43.757Z,1536864943.757 [AcousticModem_Benthos_ATM900](DEBUG): Initializing AcousticModem_Benthos_ATM900.
2018-09-13T18:55:44.229Z,1536864944.229 [SBIT](IMPORTANT): Beginning Startup BIT
2018-09-13T18:55:44.242Z,1536864944.242 [CBIT](IMPORTANT): Beginning ground fault scan
2018-09-13T18:55:47.394Z,1536864947.394 [Rowe_600LCM](FAULT): Did not receive valid device response within the specified allowable sample time.
2018-09-13T18:55:47.394Z,1536864947.394 [Rowe_600LCM] Communications Fault, FailCount= 1
2018-09-13T18:55:47.394Z,1536864947.394 [Rowe_600LCM](ERROR): Communications Fault
2018-09-13T18:55:47.759Z,1536864947.759 [CBIT](ERROR): Communications Fault in component: Rowe_600LCM
2018-09-13T18:55:47.798Z,1536864947.798 [Rowe_600LCM](INFO): Stopping potential previous instance(s) of roweadcp LCM interface
2018-09-13T18:55:48.152Z,1536864948.152 [Rowe_600LCM](INFO): Powering down
2018-09-13T18:55:49.584Z,1536864949.584 [CBI