2018-09-13T18:49:00.064Z,1536864540.064 [Supervisor](DEBUG): Initializing supervisor.
2018-09-13T18:49:00.066Z,1536864540.066 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-09-13T18:49:00.067Z,1536864540.067 [SyncHandler](INFO): Protected caller Thread ID is 798
2018-09-13T18:49:00.067Z,1536864540.067 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-09-13T18:49:00.068Z,1536864540.068 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-09-13T18:49:00.069Z,1536864540.069 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 799
2018-09-13T18:49:00.071Z,1536864540.071 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-09-13T18:49:00.083Z,1536864540.083 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-09-13T18:49:00.084Z,1536864540.084 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-09-13T18:49:00.084Z,1536864540.084 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 800
2018-09-13T18:49:00.085Z,1536864540.085 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-09-13T18:49:00.086Z,1536864540.086 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-09-13T18:49:00.086Z,1536864540.086 [logger ThreadHandler](INFO): Protected caller Thread ID is 801
2018-09-13T18:49:00.088Z,1536864540.088 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-09-13T18:49:00.089Z,1536864540.089 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-09-13T18:49:00.093Z,1536864540.093 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-09-13T18:49:00.192Z,1536864540.192 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-09-13T18:49:00.194Z,1536864540.194 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-09-13T18:49:00.297Z,1536864540.297 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-09-13T18:49:00.299Z,1536864540.299 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-09-13T18:49:00.510Z,1536864540.510 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-09-13T18:49:00.512Z,1536864540.512 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-09-13T18:49:00.850Z,1536864540.850 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-09-13T18:49:00.850Z,1536864540.850 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-09-13T18:49:01.202Z,1536864541.202 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-09-13T18:49:01.202Z,1536864541.202 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-09-13T18:49:01.689Z,1536864541.689 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-09-13T18:49:01.690Z,1536864541.690 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-09-13T18:49:02.126Z,1536864542.126 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-09-13T18:49:02.127Z,1536864542.127 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-09-13T18:49:02.616Z,1536864542.616 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-09-13T18:49:02.618Z,1536864542.618 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-09-13T18:49:02.702Z,1536864542.702 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-09-13T18:49:03.023Z,1536864543.023 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-09-13T18:49:03.025Z,1536864543.025 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-09-13T18:49:03.176Z,1536864543.176 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-09-13T18:49:03.177Z,1536864543.177 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-09-13T18:49:03.392Z,1536864543.392 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-09-13T18:49:03.394Z,1536864543.394 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-09-13T18:49:03.613Z,1536864543.613 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-09-13T18:49:03.614Z,1536864543.614 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-09-13T18:49:03.717Z,1536864543.717 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-09-13T18:49:03.717Z,1536864543.717 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-09-13T18:49:04.085Z,1536864544.085 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-09-13T18:49:04.087Z,1536864544.087 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-makai/
2018-09-13T18:49:04.090Z,1536864544.090 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Battery.cfg
2018-09-13T18:49:04.329Z,1536864544.329 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2018-09-13T18:49:04.330Z,1536864544.330 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/logger.cfg
2018-09-13T18:49:04.438Z,1536864544.438 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Science.cfg
2018-09-13T18:49:04.586Z,1536864544.586 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Control.cfg
2018-09-13T18:49:04.683Z,1536864544.683 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Simulator.cfg
2018-09-13T18:49:04.769Z,1536864544.769 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Sensor.cfg
2018-09-13T18:49:04.917Z,1536864544.917 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/vehicle.cfg
2018-09-13T18:49:05.103Z,1536864545.103 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Servo.cfg
2018-09-13T18:49:05.203Z,1536864545.203 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Navigation.cfg
2018-09-13T18:49:05.300Z,1536864545.300 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/goby.cfg
2018-09-13T18:49:05.399Z,1536864545.399 [ComponentRegistry](DEBUG): Loaded Config Component "Config/goby
2018-09-13T18:49:05.399Z,1536864545.399 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/BIT.cfg
2018-09-13T18:49:05.500Z,1536864545.500 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/secure.cfg
2018-09-13T18:49:05.586Z,1536864545.586 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2018-09-13T18:49:05.609Z,1536864545.609 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-09-13T18:49:05.734Z,1536864545.734 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-09-13T18:49:05.735Z,1536864545.735 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-09-13T18:49:05.758Z,1536864545.758 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-09-13T18:49:05.759Z,1536864545.759 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-09-13T18:49:05.815Z,1536864545.815 [DepthRateCalculator] Loaded
2018-09-13T18:49:05.815Z,1536864545.815 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-09-13T18:49:05.821Z,1536864545.821 [PitchRateCalculator] Loaded
2018-09-13T18:49:05.821Z,1536864545.821 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-09-13T18:49:05.838Z,1536864545.838 [SpeedCalculator] Loaded
2018-09-13T18:49:05.838Z,1536864545.838 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-09-13T18:49:05.859Z,1536864545.859 [TempGradientCalculator] Loaded
2018-09-13T18:49:05.859Z,1536864545.859 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-09-13T18:49:05.875Z,1536864545.875 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2018-09-13T18:49:05.875Z,1536864545.875 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2018-09-13T18:49:05.881Z,1536864545.881 [YawRateCalculator] Loaded
2018-09-13T18:49:05.881Z,1536864545.881 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-09-13T18:49:05.921Z,1536864545.921 [ElevatorOffsetCalculator] Loaded
2018-09-13T18:49:05.922Z,1536864545.922 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-09-13T18:49:05.922Z,1536864545.922 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-09-13T18:49:05.923Z,1536864545.923 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-09-13T18:49:05.960Z,1536864545.960 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-09-13T18:49:05.960Z,1536864545.960 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-09-13T18:49:17.624Z,1536864557.624 [DataOverHttps] Loaded
2018-09-13T18:49:17.625Z,1536864557.625 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2018-09-13T18:49:17.650Z,1536864557.650 [Depth_Keller] Loaded
2018-09-13T18:49:17.650Z,1536864557.650 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2018-09-13T18:49:17.659Z,1536864557.659 [GobyModem] Loaded
2018-09-13T18:49:17.659Z,1536864557.659 [ComponentRegistry](DEBUG): SyncComponent "GobyModem" handled in the control thread.
2018-09-13T18:49:17.757Z,1536864557.757 [NAL9602] Loaded
2018-09-13T18:49:17.757Z,1536864557.757 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2018-09-13T18:49:17.773Z,1536864557.773 [Onboard] Loaded
2018-09-13T18:49:17.773Z,1536864557.773 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2018-09-13T18:49:17.784Z,1536864557.784 [Radio_Surface] Loaded
2018-09-13T18:49:17.784Z,1536864557.784 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2018-09-13T18:49:17.785Z,1536864557.785 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 419CB4E0
2018-09-13T18:49:17.785Z,1536864557.785 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 884
2018-09-13T18:49:17.938Z,1536864557.938 [PNI_TCM] Loaded
2018-09-13T18:49:17.939Z,1536864557.939 [ComponentRegistry](DEBUG): SyncComponent "PNI_TCM" handled in the control thread.
2018-09-13T18:49:19.722Z,1536864559.722 [BPC1] Loaded
2018-09-13T18:49:19.722Z,1536864559.722 [ComponentRegistry](DEBUG): SyncComponent "BPC1" handled in the control thread.
2018-09-13T18:49:19.723Z,1536864559.723 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2018-09-13T18:49:19.724Z,1536864559.724 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-09-13T18:49:19.980Z,1536864559.980 [SBIT](DEBUG): Construct Startup Built In Test.
2018-09-13T18:49:20.003Z,1536864560.003 [SBIT] Loaded
2018-09-13T18:49:20.003Z,1536864560.003 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-09-13T18:49:20.004Z,1536864560.004 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-09-13T18:49:20.016Z,1536864560.016 [IBIT] Loaded
2018-09-13T18:49:20.016Z,1536864560.016 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-09-13T18:49:20.019Z,1536864560.019 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-09-13T18:49:20.170Z,1536864560.170 [CBIT] Loaded
2018-09-13T18:49:20.171Z,1536864560.171 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-09-13T18:49:20.171Z,1536864560.171 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-09-13T18:49:20.172Z,1536864560.172 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-09-13T18:49:20.361Z,1536864560.361 [Aanderaa_O2] Loaded
2018-09-13T18:49:20.362Z,1536864560.362 [ComponentRegistry](DEBUG): SyncComponent "Aanderaa_O2" handled in the control thread.
2018-09-13T18:49:20.379Z,1536864560.379 [ESPComponent] Loaded
2018-09-13T18:49:20.380Z,1536864560.380 [ComponentRegistry](DEBUG): SyncComponent "ESPComponent" handled in the control thread.
2018-09-13T18:49:20.394Z,1536864560.394 [PAR_Licor] Loaded
2018-09-13T18:49:20.394Z,1536864560.394 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-09-13T18:49:20.444Z,1536864560.444 [WetLabsBB2FL] Loaded
2018-09-13T18:49:20.445Z,1536864560.445 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-09-13T18:49:20.446Z,1536864560.446 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 41A8F4E0
2018-09-13T18:49:20.446Z,1536864560.446 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 885
2018-09-13T18:49:20.447Z,1536864560.447 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-09-13T18:49:20.447Z,1536864560.447 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-09-13T18:49:20.723Z,1536864560.723 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-09-13T18:49:20.724Z,1536864560.724 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-09-13T18:49:20.812Z,1536864560.812 [VerticalControl](DEBUG): Construct VerticalControl.
2018-09-13T18:49:20.908Z,1536864560.908 [VerticalControl] Loaded
2018-09-13T18:49:20.908Z,1536864560.908 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-09-13T18:49:20.909Z,1536864560.909 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-09-13T18:49:20.970Z,1536864560.970 [HorizontalControl] Loaded
2018-09-13T18:49:20.970Z,1536864560.970 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-09-13T18:49:20.971Z,1536864560.971 [SpeedControl](DEBUG): Construct SpeedControl.
2018-09-13T18:49:20.976Z,1536864560.976 [SpeedControl] Loaded
2018-09-13T18:49:20.976Z,1536864560.976 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-09-13T18:49:20.977Z,1536864560.977 [LoopControl](DEBUG): Construct LoopControl.
2018-09-13T18:49:20.977Z,1536864560.977 [LoopControl] Loaded
2018-09-13T18:49:20.978Z,1536864560.978 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-09-13T18:49:20.978Z,1536864560.978 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-09-13T18:49:20.979Z,1536864560.979 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-09-13T18:49:21.100Z,1536864561.100 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2018-09-13T18:49:21.100Z,1536864561.100 [StratificationFrontDetector](DEBUG): (re)initializing
2018-09-13T18:49:21.100Z,1536864561.100 [StratificationFrontDetector] Loaded
2018-09-13T18:49:21.100Z,1536864561.100 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2018-09-13T18:49:21.101Z,1536864561.101 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-09-13T18:49:21.102Z,1536864561.102 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-09-13T18:49:21.220Z,1536864561.220 [BuoyancyServo] Loaded
2018-09-13T18:49:21.220Z,1536864561.220 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-09-13T18:49:21.232Z,1536864561.232 [ElevatorServo] Loaded
2018-09-13T18:49:21.232Z,1536864561.232 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-09-13T18:49:21.243Z,1536864561.243 [MassServo] Loaded
2018-09-13T18:49:21.244Z,1536864561.244 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-09-13T18:49:21.255Z,1536864561.255 [RudderServo] Loaded
2018-09-13T18:49:21.255Z,1536864561.255 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-09-13T18:49:21.267Z,1536864561.267 [ThrusterServo] Loaded
2018-09-13T18:49:21.267Z,1536864561.267 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-09-13T18:49:21.267Z,1536864561.267 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-09-13T18:49:21.268Z,1536864561.268 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-09-13T18:49:21.408Z,1536864561.408 [DeadReckonUsingSpeedCalculator] Loaded
2018-09-13T18:49:21.409Z,1536864561.409 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-09-13T18:49:21.413Z,1536864561.413 [UniversalFixResidualReporter] Loaded
2018-09-13T18:49:21.413Z,1536864561.413 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-09-13T18:49:21.414Z,1536864561.414 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-09-13T18:49:21.584Z,1536864561.584 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-09-13T18:49:21.585Z,1536864561.585 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-09-13T18:49:21.592Z,1536864561.592 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-09-13T18:49:21.602Z,1536864561.602 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 41BE84E0
2018-09-13T18:49:21.602Z,1536864561.602 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 886
2018-09-13T18:49:21.607Z,1536864561.607 [Supervisor](INFO): Main Thread ID is 797
2018-09-13T18:49:21.607Z,1536864561.607 [Supervisor](DEBUG): Running supervisor.
2018-09-13T18:49:21.608Z,1536864561.608 [CommandLine ThreadHandler](INFO): Handler Thread ID is 887
2018-09-13T18:49:21.631Z,1536864561.631 [controlThread ThreadHandler](INFO): Handler Thread ID is 888
2018-09-13T18:49:21.631Z,1536864561.631 [controlThread](DEBUG): Initializing ControlThread
2018-09-13T18:49:21.632Z,1536864561.632 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-09-13T18:49:21.632Z,1536864561.632 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-09-13T18:49:21.633Z,1536864561.633 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-09-13T18:49:21.633Z,1536864561.633 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-09-13T18:49:21.634Z,1536864561.634 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2018-09-13T18:49:21.635Z,1536864561.635 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-09-13T18:49:21.635Z,1536864561.635 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-09-13T18:49:21.655Z,1536864561.655 [logger ThreadHandler](INFO): Handler Thread ID is 889
2018-09-13T18:49:21.683Z,1536864561.683 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 890
2018-09-13T18:49:21.689Z,1536864561.689 [Radio_Surface](INFO): Powering up
2018-09-13T18:49:21.703Z,1536864561.703 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 891
2018-09-13T18:49:21.704Z,1536864561.704 [WetLabsBB2FL](INFO): Powering down
2018-09-13T18:49:21.743Z,1536864561.743 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 892
2018-09-13T18:49:21.756Z,1536864561.756 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4MI11M.000
2018-09-13T18:49:21.756Z,1536864561.756 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4MI11M.000
2018-09-13T18:49:21.756Z,1536864561.756 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5MI07M.000
2018-09-13T18:49:21.756Z,1536864561.756 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5MI07M.000
2018-09-13T18:49:21.756Z,1536864561.756 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5OH07M.000
2018-09-13T18:49:21.757Z,1536864561.757 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5OH07M.000
2018-09-13T18:49:21.757Z,1536864561.757 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5OH31M.000
2018-09-13T18:49:21.757Z,1536864561.757 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5OH31M.000
2018-09-13T18:50:39.599Z,1536864639.599 [CommandLine](IMPORTANT): got command show stack
2018-09-13T18:50:39.599Z,1536864639.599 [CommandLine](IMPORTANT): Behavior Stack:

2018-09-13T18:50:39.599Z,1536864639.599 [MissionManager](IMPORTANT): No startup, active, or default mission!
2018-09-13T18:50:54.172Z,1536864654.172 [GobyModem](CRITICAL): exception at startup: Failed to startup.
2018-09-13T18:50:54.235Z,1536864654.235 [SBIT](INFO): Initialize SBIT Component.
2018-09-13T18:50:54.236Z,1536864654.236 [SBIT](IMPORTANT): git: 2018-09-06-4-gec17f04
2018-09-13T18:50:54.236Z,1536864654.236 [SBIT](INFO): git hash: ec17f04c03492d554d64019aa93bf1adb3b9dd40
2018-09-13T18:50:54.236Z,1536864654.236 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2018-09-13T18:50:54.237Z,1536864654.237 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #639 PREEMPT Wed Mar 12 12:53:33 PDT 2014
Kernel Reported: #2 PREEMPT Thu Jan 11 20:13:48 PST 2018
2018-09-13T18:50:54.239Z,1536864654.239 [SBIT](INFO): Beginning SBIT in 28.000000 seconds.
2018-09-13T18:50:54.239Z,1536864654.239 [IBIT](INFO): Initialize IBIT Component.
2018-09-13T18:50:54.240Z,1536864654.240 [CBIT](DEBUG): Initialize CBIT Component.
2018-09-13T18:50:54.240Z,1536864654.240 [CBIT](CRITICAL): LAST REBOOT DUE TO WATCHDOG TIMER RESET.
2018-09-13T18:50:54.352Z,1536864654.352 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-09-13T18:50:54.354Z,1536864654.354 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-09-13T18:50:54.355Z,1536864654.355 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-09-13T18:50:54.355Z,1536864654.355 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-09-13T18:50:54.363Z,1536864654.364 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-09-13T18:50:54.364Z,1536864654.364 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-09-13T18:50:54.365Z,1536864654.365 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-09-13T18:50:54.365Z,1536864654.365 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-09-13T18:50:54.366Z,1536864654.366 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-09-13T18:50:54.414Z,1536864654.414 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-09-13T18:50:54.442Z,1536864654.442 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-09-13T18:50:54.443Z,1536864654.443 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-09-13T18:50:54.511Z,1536864654.511 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-09-13T18:50:54.512Z,1536864654.512 [Default:A.Wait](DEBUG): Construct Wait.
2018-09-13T18:50:54.514Z,1536864654.514 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-09-13T18:50:54.536Z,1536864654.536 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-09-13T18:50:54.539Z,1536864654.539 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-09-13T18:50:54.557Z,1536864654.557 [Default:E.Execute](DEBUG): Construct Execute.
2018-09-13T18:50:54.567Z,1536864654.567 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-09-13T18:50:54.583Z,1536864654.583 [controlThread](DEBUG): Component order: CycleStarter,DataOverHttps,Depth_Keller,GobyModem,NAL9602,Onboard,PNI_TCM,BPC1,Aanderaa_O2,ESPComponent,PAR_Licor,Depth_Keller,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,ElevatorOffsetCalculator,StratificationFrontDetector,DeadReckonUsingSpeedCalculator,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-09-13T18:50:54.592Z,1536864654.592 [DataOverHttps](DEBUG): dashIP=134.89.2.23 starts with a digit so assuming it is a numeric IP
2018-09-13T18:50:54.730Z,1536864654.730 [NAL9602](INFO): Powering up NAL9602
2018-09-13T18:50:54.900Z,1536864654.900 [ESPComponent](INFO): powering down ESP
2018-09-13T18:50:55.178Z,1536864655.178 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:50:55.244Z,1536864655.244 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:50:55.250Z,1536864655.250 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-09-13T18:50:55.257Z,1536864655.257 [ElevatorServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:50:55.262Z,1536864655.262 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-09-13T18:50:55.269Z,1536864655.269 [MassServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:50:55.274Z,1536864655.274 [MassServo](DEBUG): Initializing MassServo.
2018-09-13T18:50:55.280Z,1536864655.280 [RudderServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:50:55.286Z,1536864655.286 [RudderServo](DEBUG): Initializing RudderServo.
2018-09-13T18:50:55.292Z,1536864655.292 [ThrusterServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:50:55.298Z,1536864655.298 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-09-13T18:50:55.327Z,1536864655.327 [CommandLine](FAULT): Scheduling is paused
2018-09-13T18:50:55.328Z,1536864655.328 [CBIT](INFO): Critical error at 20180913T185054
2018-09-13T18:50:55.328Z,1536864655.328 [Supervisor](INFO): Stop Mission called by CBIT::checkCriticals
2018-09-13T18:50:55.505Z,1536864655.505 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:50:55.799Z,1536864655.799 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:50:56.156Z,1536864656.156 [BuoyancyServo](ERROR): Buoyancy initialization uart error serial timeout
2018-09-13T18:50:56.156Z,1536864656.156 [BuoyancyServo](FAULT): Buoyancy failed to initialize
2018-09-13T18:50:56.156Z,1536864656.156 [BuoyancyServo] Communications Fault, FailCount= 1
2018-09-13T18:50:56.156Z,1536864656.156 [BuoyancyServo](ERROR): Communications Fault
2018-09-13T18:50:56.366Z,1536864656.366 [CBIT](ERROR): Communications Fault in component: BuoyancyServo
2018-09-13T18:50:56.404Z,1536864656.404 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:50:56.432Z,1536864656.432 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-09-13T18:50:56.433Z,1536864656.433 [BuoyancyServo](INFO): Powering down
2018-09-13T18:50:56.840Z,1536864656.840 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:50:57.216Z,1536864657.216 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:50:57.612Z,1536864657.612 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:50:58.131Z,1536864658.131 [Aanderaa_O2](INFO): Powering down
2018-09-13T18:50:58.162Z,1536864658.162 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-09-13T18:50:58.483Z,1536864658.483 [CBIT](INFO): Clearing failed state for component BuoyancyServo
2018-09-13T18:50:58.483Z,1536864658.483 [BuoyancyServo] No Fault, FailCount= 1
2018-09-13T18:50:58.831Z,1536864658.831 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-09-13T18:50:58.951Z,1536864658.951 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-09-13T18:51:05.205Z,1536864665.205 [GobyModem](INFO): Added slot 1
2018-09-13T18:51:05.206Z,1536864665.206 [GobyModem](INFO): Added slot 2
2018-09-13T18:51:05.207Z,1536864665.207 [GobyModem](INFO): Added slot 3
2018-09-13T18:51:06.792Z,1536864666.792 [NAL9602](INFO): NAL9602 initialized
2018-09-13T18:51:22.847Z,1536864682.847 [SBIT](IMPORTANT): Beginning Startup BIT
2018-09-13T18:51:22.852Z,1536864682.852 [CBIT](IMPORTANT): Beginning ground fault scan
2018-09-13T18:51:24.408Z,1536864684.408 [GobyModem](INFO): {control} starting send from me
2018-09-13T18:51:33.856Z,1536864693.856 [CBIT](IMPORTANT): No ground fault detected
mA:
CHAN A0 (Batt): -0.007879
CHAN A1 (24V): -0.013105
CHAN A2 (12V): -0.005799
CHAN A3 (5V): -0.003505
CHAN B0 (3.3V): -0.000901
CHAN B1 (3.15aV): -0.000784
CHAN B2 (3.15bV): -0.001223
CHAN B3 (GND): -0.000385
OPEN: 0.004387
Full Scale Calc: 4.765 mA, -1.589 mA
2018-09-13T18:52:00.349Z,1536864720.349 [GobyModem](INFO): {control} starting send from me
2018-09-13T18:52:04.389Z,1536864724.389 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.004530
2018-09-13T18:52:17.378Z,1536864737.378 [SBIT](IMPORTANT): SBIT PASSED
2018-09-13T18:52:17.439Z,1536864737.439 [CommandLine](IMPORTANT): got command configSet list
2018-09-13T18:52:17.440Z,1536864737.440 [CommandLine](IMPORTANT): Listing configuration overrides from Data/persisted.cfg
2018-09-13T18:52:17.441Z,1536864737.441 [CommandLine](IMPORTANT): AcousticModem_Benthos_ATM900.loadAtStartup=0 bool;

2018-09-13T18:52:17.441Z,1536864737.441 [CommandLine](IMPORTANT): BuoyancyServo.fastPumpDepth=10 meter;

2018-09-13T18:52:17.441Z,1536864737.441 [CommandLine](IMPORTANT): CTD_Seabird.minSalinityBound=0.01 practical_salinity_unit;

2018-09-13T18:52:17.441Z,1536864737.441 [CommandLine](IMPORTANT): DataOverHttps.connectionTimeout=60 second;

2018-09-13T18:52:17.441Z,1536864737.441 [CommandLine](IMPORTANT): Depth_Keller.offset=-0.56 decibar;

2018-09-13T18:52:17.441Z,1536864737.441 [CommandLine](IMPORTANT): DropWeight.loadAtStartup=0 bool;

2018-09-13T18:52:17.441Z,1536864737.441 [CommandLine](IMPORTANT): Express linearApproximation CTD_Seabird.bin_median_sea_water_salinity 0.000500 practical_salinity_unit;

2018-09-13T18:52:17.442Z,1536864737.442 [CommandLine](IMPORTANT): Express linearApproximation CTD_Seabird.bin_median_sea_water_temperature 0.005000 kelvin;

2018-09-13T18:52:17.442Z,1536864737.442 [CommandLine](IMPORTANT): Express linearApproximation WetLabsBB2FL.BackscatteringCoeff650nm 0.010000 reciprocal_meter;

2018-09-13T18:52:17.442Z,1536864737.442 [CommandLine](IMPORTANT): Express none WetLabsBB2FL.bin_mean_mass_concentration_of_chlorophyll_in_sea_water;

2018-09-13T18:52:17.442Z,1536864737.442 [CommandLine](IMPORTANT): Express linearApproximation WetLabsBB2FL.bin_median_mass_concentration_of_chlorophyll_in_sea_water 0.500000 microgram_per_liter;

2018-09-13T18:52:17.442Z,1536864737.442 [CommandLine](IMPORTANT): Express none WetLabsBB2FL.mass_concentration_of_chlorophyll_in_sea_water;

2018-09-13T18:52:17.442Z,1536864737.442 [CommandLine](IMPORTANT): Express linearApproximation height_above_sea_floor 2.000000 meter;

2018-09-13T18:52:17.443Z,1536864737.443 [CommandLine](IMPORTANT): Express none mass_concentration_of_chlorophyll_in_sea_water;

2018-09-13T18:52:17.443Z,1536864737.443 [CommandLine](IMPORTANT): IBIT.batteryHibernationTimeout=1 minute;

2018-09-13T18:52:17.443Z,1536864737.443 [CommandLine](IMPORTANT): IBIT.batteryMissingStickThreshold=18 count;

2018-09-13T18:52:17.443Z,1536864737.443 [CommandLine](IMPORTANT): NAL9602.iridiumMTQueueTimeout=2 minute;

2018-09-13T18:52:17.443Z,1536864737.443 [CommandLine](IMPORTANT): NavChart.loadAtStartup=0 bool;

2018-09-13T18:52:17.443Z,1536864737.443 [CommandLine](IMPORTANT): Normal none WetLabsBB2FL.mass_concentration_of_chlorophyll_in_sea_water;

2018-09-13T18:52:17.443Z,1536864737.443 [CommandLine](IMPORTANT): Normal none mass_concentration_of_chlorophyll_in_sea_water;

2018-09-13T18:52:17.443Z,1536864737.443 [CommandLine](IMPORTANT): Rowe_600LCM.loadAtStartup=0 bool;

2018-09-13T18:52:17.444Z,1536864737.444 [CommandLine](IMPORTANT): Vehicle.checkMTQueue=0 bool;

2018-09-13T18:52:17.444Z,1536864737.444 [CommandLine](IMPORTANT): VerticalControl.buoyancyNeutral=300 cubic_centimeter;

2018-09-13T18:52:17.444Z,1536864737.444 [CommandLine](IMPORTANT): VerticalControl.massDefault=2 millimeter;

2018-09-13T18:52:17.779Z,1536864737.779 [MissionManager](IMPORTANT): Started mission Startup
2018-09-13T18:52:17.780Z,1536864737.780 [Startup] Running Loop=1
2018-09-13T18:52:17.780Z,1536864737.780 [Startup](DEBUG): Aggregate::initialize Startup
2018-09-13T18:52:17.780Z,1536864737.780 [Startup:A.GoToSurface] Running Loop=1
2018-09-13T18:52:17.780Z,1536864737.780 [Startup:A.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2018-09-13T18:52:17.781Z,1536864737.781 [Startup:A.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2018-09-13T18:52:17.781Z,1536864737.781 [Startup:A.GoToSurface](DEB