2018-04-12T21:17:28.142Z,1523567848.142 [Supervisor](DEBUG): Initializing supervisor.
2018-04-12T21:17:28.145Z,1523567848.145 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-04-12T21:17:28.146Z,1523567848.146 [SyncHandler](INFO): Protected caller Thread ID is 804
2018-04-12T21:17:28.147Z,1523567848.147 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-04-12T21:17:28.148Z,1523567848.148 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-04-12T21:17:28.149Z,1523567848.149 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 805
2018-04-12T21:17:28.155Z,1523567848.155 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-04-12T21:17:28.168Z,1523567848.168 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-04-12T21:17:28.169Z,1523567848.169 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-04-12T21:17:28.170Z,1523567848.170 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 806
2018-04-12T21:17:28.172Z,1523567848.172 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-04-12T21:17:28.173Z,1523567848.173 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-04-12T21:17:28.174Z,1523567848.174 [logger ThreadHandler](INFO): Protected caller Thread ID is 807
2018-04-12T21:17:28.177Z,1523567848.177 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-04-12T21:17:28.177Z,1523567848.177 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-04-12T21:17:28.181Z,1523567848.181 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-04-12T21:17:28.296Z,1523567848.296 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-04-12T21:17:28.297Z,1523567848.297 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-04-12T21:17:28.413Z,1523567848.413 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-04-12T21:17:28.414Z,1523567848.414 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-04-12T21:17:28.619Z,1523567848.619 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-04-12T21:17:28.620Z,1523567848.620 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-04-12T21:17:28.947Z,1523567848.947 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-04-12T21:17:28.949Z,1523567848.949 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-04-12T21:17:29.308Z,1523567849.308 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-04-12T21:17:29.310Z,1523567849.310 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-04-12T21:17:29.789Z,1523567849.789 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-04-12T21:17:29.790Z,1523567849.790 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-04-12T21:17:30.178Z,1523567850.178 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-04-12T21:17:30.179Z,1523567850.179 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-04-12T21:17:30.649Z,1523567850.649 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-04-12T21:17:30.650Z,1523567850.650 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-04-12T21:17:30.736Z,1523567850.736 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-04-12T21:17:31.109Z,1523567851.109 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-04-12T21:17:31.110Z,1523567851.110 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-04-12T21:17:31.273Z,1523567851.273 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-04-12T21:17:31.274Z,1523567851.274 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-04-12T21:17:31.497Z,1523567851.497 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-04-12T21:17:31.497Z,1523567851.497 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-04-12T21:17:31.718Z,1523567851.718 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-04-12T21:17:31.719Z,1523567851.719 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-04-12T21:17:31.825Z,1523567851.825 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-04-12T21:17:31.826Z,1523567851.826 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-04-12T21:17:31.996Z,1523567851.996 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-04-12T21:17:31.998Z,1523567851.998 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-INSERTREALNAME/
2018-04-12T21:17:31.998Z,1523567851.998 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2018-04-12T21:17:32.002Z,1523567852.002 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-04-12T21:17:32.323Z,1523567852.323 [InternalSim] Loaded
2018-04-12T21:17:32.324Z,1523567852.324 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2018-04-12T21:17:32.324Z,1523567852.324 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-04-12T21:17:32.325Z,1523567852.325 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-04-12T21:17:32.348Z,1523567852.348 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-04-12T21:17:32.349Z,1523567852.349 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-04-12T21:17:32.409Z,1523567852.409 [DepthRateCalculator] Loaded
2018-04-12T21:17:32.409Z,1523567852.409 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-04-12T21:17:32.414Z,1523567852.414 [PitchRateCalculator] Loaded
2018-04-12T21:17:32.414Z,1523567852.414 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-04-12T21:17:32.432Z,1523567852.432 [SpeedCalculator] Loaded
2018-04-12T21:17:32.432Z,1523567852.432 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-04-12T21:17:32.452Z,1523567852.452 [TempGradientCalculator] Loaded
2018-04-12T21:17:32.452Z,1523567852.452 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-04-12T21:17:32.471Z,1523567852.471 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2018-04-12T21:17:32.472Z,1523567852.472 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2018-04-12T21:17:32.477Z,1523567852.477 [YawRateCalculator] Loaded
2018-04-12T21:17:32.477Z,1523567852.477 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-04-12T21:17:32.517Z,1523567852.517 [ElevatorOffsetCalculator] Loaded
2018-04-12T21:17:32.518Z,1523567852.518 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-04-12T21:17:32.518Z,1523567852.518 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-04-12T21:17:32.519Z,1523567852.519 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-04-12T21:17:32.557Z,1523567852.557 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-04-12T21:17:32.558Z,1523567852.558 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-04-12T21:17:33.094Z,1523567853.094 [AHRS_sp3003D] Loaded
2018-04-12T21:17:33.095Z,1523567853.095 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2018-04-12T21:17:33.251Z,1523567853.251 [DataOverHttps] Loaded
2018-04-12T21:17:33.251Z,1523567853.251 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2018-04-12T21:17:33.266Z,1523567853.266 [Depth_Keller] Loaded
2018-04-12T21:17:33.266Z,1523567853.266 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2018-04-12T21:17:33.271Z,1523567853.271 [DropWeight] Loaded
2018-04-12T21:17:33.271Z,1523567853.271 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2018-04-12T21:17:33.412Z,1523567853.412 [DVL_micro] Loaded
2018-04-12T21:17:33.412Z,1523567853.412 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2018-04-12T21:17:33.509Z,1523567853.509 [NAL9602] Loaded
2018-04-12T21:17:33.509Z,1523567853.509 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2018-04-12T21:17:33.526Z,1523567853.526 [Onboard] Loaded
2018-04-12T21:17:33.526Z,1523567853.526 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2018-04-12T21:17:33.551Z,1523567853.551 [Radio_Surface] Loaded
2018-04-12T21:17:33.552Z,1523567853.552 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2018-04-12T21:17:33.555Z,1523567853.555 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 407A64E0
2018-04-12T21:17:33.556Z,1523567853.556 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 854
2018-04-12T21:17:33.694Z,1523567853.694 [DAT] Loaded
2018-04-12T21:17:33.694Z,1523567853.694 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2018-04-12T21:17:33.700Z,1523567853.700 [SCPI] Loaded
2018-04-12T21:17:33.700Z,1523567853.700 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2018-04-12T21:17:33.701Z,1523567853.701 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2018-04-12T21:17:33.703Z,1523567853.703 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-04-12T21:17:33.891Z,1523567853.891 [SBIT](DEBUG): Construct Startup Built In Test.
2018-04-12T21:17:33.913Z,1523567853.913 [SBIT] Loaded
2018-04-12T21:17:33.913Z,1523567853.913 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-04-12T21:17:33.914Z,1523567853.914 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-04-12T21:17:33.933Z,1523567853.933 [IBIT] Loaded
2018-04-12T21:17:33.934Z,1523567853.934 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-04-12T21:17:33.937Z,1523567853.937 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-04-12T21:17:34.101Z,1523567854.101 [CBIT] Loaded
2018-04-12T21:17:34.102Z,1523567854.102 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-04-12T21:17:34.102Z,1523567854.102 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-04-12T21:17:34.103Z,1523567854.103 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-04-12T21:17:34.348Z,1523567854.348 [CTD_NeilBrown] Loaded
2018-04-12T21:17:34.348Z,1523567854.348 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2018-04-12T21:17:34.349Z,1523567854.349 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 408664E0
2018-04-12T21:17:34.350Z,1523567854.350 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 855
2018-04-12T21:17:34.372Z,1523567854.372 [PAR_Licor] Loaded
2018-04-12T21:17:34.372Z,1523567854.372 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-04-12T21:17:34.423Z,1523567854.423 [WetLabsBB2FL] Loaded
2018-04-12T21:17:34.423Z,1523567854.423 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-04-12T21:17:34.424Z,1523567854.424 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 408964E0
2018-04-12T21:17:34.425Z,1523567854.425 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 856
2018-04-12T21:17:34.427Z,1523567854.427 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-04-12T21:17:34.428Z,1523567854.428 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-04-12T21:17:34.718Z,1523567854.718 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-04-12T21:17:34.718Z,1523567854.718 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-04-12T21:17:34.808Z,1523567854.808 [VerticalControl](DEBUG): Construct VerticalControl.
2018-04-12T21:17:34.914Z,1523567854.914 [VerticalControl] Loaded
2018-04-12T21:17:34.914Z,1523567854.914 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-04-12T21:17:34.915Z,1523567854.915 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-04-12T21:17:34.984Z,1523567854.984 [HorizontalControl] Loaded
2018-04-12T21:17:34.985Z,1523567854.985 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-04-12T21:17:34.986Z,1523567854.986 [SpeedControl](DEBUG): Construct SpeedControl.
2018-04-12T21:17:34.991Z,1523567854.991 [SpeedControl] Loaded
2018-04-12T21:17:34.991Z,1523567854.991 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-04-12T21:17:34.992Z,1523567854.992 [BackSeatDriver](DEBUG): Construct BackSeatDriver.
2018-04-12T21:17:34.994Z,1523567854.994 [BackSeatDriver] Loaded
2018-04-12T21:17:34.994Z,1523567854.994 [ComponentRegistry](DEBUG): SyncComponent "BackSeatDriver" handled in the control thread.
2018-04-12T21:17:34.995Z,1523567854.995 [LoopControl](DEBUG): Construct LoopControl.
2018-04-12T21:17:34.995Z,1523567854.995 [LoopControl] Loaded
2018-04-12T21:17:34.996Z,1523567854.996 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-04-12T21:17:34.996Z,1523567854.996 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-04-12T21:17:34.997Z,1523567854.997 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-04-12T21:17:35.124Z,1523567855.124 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2018-04-12T21:17:35.124Z,1523567855.124 [StratificationFrontDetector](DEBUG): (re)initializing
2018-04-12T21:17:35.125Z,1523567855.125 [StratificationFrontDetector] Loaded
2018-04-12T21:17:35.125Z,1523567855.125 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2018-04-12T21:17:35.125Z,1523567855.125 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-04-12T21:17:35.126Z,1523567855.126 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-04-12T21:17:35.252Z,1523567855.252 [BuoyancyServo] Loaded
2018-04-12T21:17:35.252Z,1523567855.252 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-04-12T21:17:35.263Z,1523567855.263 [ElevatorServo] Loaded
2018-04-12T21:17:35.263Z,1523567855.263 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-04-12T21:17:35.276Z,1523567855.276 [MassServo] Loaded
2018-04-12T21:17:35.277Z,1523567855.277 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-04-12T21:17:35.287Z,1523567855.287 [RudderServo] Loaded
2018-04-12T21:17:35.288Z,1523567855.288 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-04-12T21:17:35.300Z,1523567855.300 [ThrusterServo] Loaded
2018-04-12T21:17:35.300Z,1523567855.300 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-04-12T21:17:35.301Z,1523567855.301 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-04-12T21:17:35.301Z,1523567855.301 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-04-12T21:17:35.413Z,1523567855.413 [DeadReckonUsingMultipleVelocitySources] Loaded
2018-04-12T21:17:35.413Z,1523567855.413 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2018-04-12T21:17:35.466Z,1523567855.466 [DeadReckonUsingSpeedCalculator] Loaded
2018-04-12T21:17:35.466Z,1523567855.466 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-04-12T21:17:35.481Z,1523567855.481 [NavChart] Loaded
2018-04-12T21:17:35.481Z,1523567855.481 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-04-12T21:17:35.485Z,1523567855.485 [UniversalFixResidualReporter] Loaded
2018-04-12T21:17:35.486Z,1523567855.486 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-04-12T21:17:35.486Z,1523567855.486 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-04-12T21:17:35.489Z,1523567855.489 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-04-12T21:17:35.490Z,1523567855.490 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-04-12T21:17:35.496Z,1523567855.496 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-04-12T21:17:35.497Z,1523567855.497 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 409EF4E0
2018-04-12T21:17:35.498Z,1523567855.498 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 857
2018-04-12T21:17:35.502Z,1523567855.502 [Supervisor](INFO): Main Thread ID is 800
2018-04-12T21:17:35.502Z,1523567855.502 [Supervisor](DEBUG): Running supervisor.
2018-04-12T21:17:35.503Z,1523567855.503 [CommandLine ThreadHandler](INFO): Handler Thread ID is 858
2018-04-12T21:17:35.510Z,1523567855.510 [controlThread ThreadHandler](INFO): Handler Thread ID is 859
2018-04-12T21:17:35.510Z,1523567855.510 [controlThread](DEBUG): Initializing ControlThread
2018-04-12T21:17:35.511Z,1523567855.511 [InternalSim](DEBUG):  InternalSim initializing...
2018-04-12T21:17:35.517Z,1523567855.517 [InternalSim](DEBUG): oceanModelVarCount=0
2018-04-12T21:17:35.573Z,1523567855.573 [logger ThreadHandler](INFO): Handler Thread ID is 860
2018-04-12T21:17:35.630Z,1523567855.630 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 861
2018-04-12T21:17:35.638Z,1523567855.638 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-04-12T21:17:35.638Z,1523567855.638 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-04-12T21:17:35.639Z,1523567855.639 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-04-12T21:17:35.639Z,1523567855.639 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-04-12T21:17:35.648Z,1523567855.648 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 862
2018-04-12T21:17:35.649Z,1523567855.649 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2018-04-12T21:17:35.650Z,1523567855.650 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-04-12T21:17:35.650Z,1523567855.650 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-04-12T21:17:35.654Z,1523567855.654 [SBIT](INFO): Initialize SBIT Component.
2018-04-12T21:17:35.655Z,1523567855.655 [SBIT](IMPORTANT): git: 2018-03-26-2-gc06366e
2018-04-12T21:17:35.655Z,1523567855.655 [SBIT](INFO): git hash: c06366e488986061b2c97b8bb696d868dcd187c8
2018-04-12T21:17:35.656Z,1523567855.656 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2018-04-12T21:17:35.656Z,1523567855.656 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #13 PREEMPT Mon Apr 9 12:11:32 PDT 2018
2018-04-12T21:17:35.657Z,1523567855.657 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2018-04-12T21:17:35.658Z,1523567855.658 [IBIT](INFO): Initialize IBIT Component.
2018-04-12T21:17:35.659Z,1523567855.659 [CBIT](DEBUG): Initialize CBIT Component.
2018-04-12T21:17:35.659Z,1523567855.659 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2018-04-12T21:17:35.659Z,1523567855.659 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-04-12T21:17:35.660Z,1523567855.660 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-04-12T21:17:35.662Z,1523567855.662 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-04-12T21:17:35.663Z,1523567855.663 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-04-12T21:17:35.663Z,1523567855.663 [BackSeatDriver](DEBUG): Initialize BackSeatDriver Component.
2018-04-12T21:17:35.694Z,1523567855.694 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 863
2018-04-12T21:17:35.776Z,1523567855.776 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 864
2018-04-12T21:17:35.873Z,1523567855.873 [NavChartDb](FAULT): Change detected in ENC collection. Wiping NavChart Directory
2018-04-12T21:17:35.877Z,1523567855.877 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-04-12T21:17:35.878Z,1523567855.878 [NavChartDb](IMPORTANT): Will load Electronic Nav Chart data from US1WC07M.000
2018-04-12T21:17:35.879Z,1523567855.879 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-04-12T21:17:35.880Z,1523567855.880 [NavChartDb](IMPORTANT): Will load Electronic Nav Chart data from US2WC11M.000
2018-04-12T21:17:35.880Z,1523567855.880 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-04-12T21:17:35.881Z,1523567855.881 [NavChartDb](IMPORTANT): Will load Electronic Nav Chart data from US3CA52M.000
2018-04-12T21:17:35.882Z,1523567855.882 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-04-12T21:17:35.883Z,1523567855.883 [NavChartDb](IMPORTANT): Will load Electronic Nav Chart data from US4CA60M.000
2018-04-12T21:17:35.884Z,1523567855.884 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-04-12T21:17:35.886Z,1523567855.886 [NavChartDb](IMPORTANT): Will load Electronic Nav Chart data from US5CA50M.000
2018-04-12T21:17:35.886Z,1523567855.886 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-04-12T21:17:35.887Z,1523567855.887 [NavChartDb](IMPORTANT): Will load Electronic Nav Chart data from US5CA61M.000
2018-04-12T21:17:35.888Z,1523567855.888 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-04-12T21:17:35.889Z,1523567855.889 [NavChartDb](IMPORTANT): Will load Electronic Nav Chart data from US5CA62M.000
2018-04-12T21:17:35.889Z,1523567855.889 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-04-12T21:17:35.891Z,1523567855.891 [NavChartDb](IMPORTANT): Will load Electronic Nav Chart data from US5CA83M.000
2018-04-12T21:17:35.988Z,1523567855.988 [NavChartDb](INFO): Setup scan of Resources/ElectronicNavigationCharts/US5CA83M.000
2018-04-12T21:17:36.345Z,1523567856.345 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-04-12T21:17:36.364Z,1523567856.364 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2018-04-12T21:17:36.365Z,1523567856.365 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2018-04-12T21:17:36.365Z,1523567856.365 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2018-04-12T21:17:36.366Z,1523567856.366 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-04-12T21:17:36.366Z,1523567856.366 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-04-12T21:17:36.367Z,1523567856.367 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-04-12T21:17:36.367Z,1523567856.367 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-04-12T21:17:36.372Z,1523567856.372 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-04-12T21:17:36.373Z,1523567856.373 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-04-12T21:17:36.419Z,1523567856.419 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-04-12T21:17:36.457Z,1523567856.457 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-04-12T21:17:36.458Z,1523567856.458 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-04-12T21:17:36.504Z,1523567856.504 [CommandLine](IMPORTANT): got command quit
2018-04-12T21:17:36.668Z,1523567856.668 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-04-12T21:17:36.669Z,1523567856.669 [Default:A.Wait](DEBUG): Construct Wait.
2018-04-12T21:17:36.671Z,1523567856.671 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-04-12T21:17:36.715Z,1523567856.715 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-04-12T21:17:36.741Z,1523567856.741 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-04-12T21:17:36.746Z,1523567856.746 [Default:E.Execute](DEBUG): Construct Execute.
2018-04-12T21:17:36.762Z,1523567856.762 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Sequence/>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-04-12T21:17:36.767Z,1523567856.767 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,ElevatorOffsetCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,BackSeatDriver,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-04-12T21:17:36.846Z,1523567856.846 [DataOverHttps](DEBUG): dashIP=134.89.2.23 starts with a digit so assuming it is a numeric IP
2018-04-12T21:17:36.915Z,1523567856.915 [DVL_micro](INFO): Initializing
2018-04-12T21:17:37.081Z,1523567857.081 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2018-04-12T21:17:37.114Z,1523567857.114 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-04-12T21:17:37.244Z,1523567857.244 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-04-12T21:17:37.250Z,1523567857.250 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-04-12T21:17:37.268Z,1523567857.268 [MassServo](DEBUG): Initializing MassServo.
2018-04-12T21:17:37.272Z,1523567857.272 [RudderServo](DEBUG): Initializing RudderServo.
2018-04-12T21:17:37.300Z,1523567857.300 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-04-12T21:17:37.526Z,1523567857.526 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2018-04-12T21:17:37.527Z,1523567857.527 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-04-12T21:17:37.643Z,1523567857.644 [Supervisor](INFO): Stop Mission called by Supervisor::terminate
2018-04-12T21:17:37.646Z,1523567857.646 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2018-04-12T21:17:37.646Z,1523567857.646 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:37.795Z,1523567857.795 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2018-04-12T21:17:37.815Z,1523567857.815 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2018-04-12T21:17:37.816Z,1523567857.816 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:37.816Z,1523567857.816 [CommandLine](INFO): Join timeout helper Thread ID is 866
2018-04-12T21:17:37.837Z,1523567857.837 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2018-04-12T21:17:37.837Z,1523567857.837 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:37.837Z,1523567857.837 [NavChartDb](INFO): Join timeout helper Thread ID is 867
2018-04-12T21:17:37.844Z,1523567857.844 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2018-04-12T21:17:37.844Z,1523567857.844 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:37.845Z,1523567857.845 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2018-04-12T21:17:37.845Z,1523567857.845 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:37.845Z,1523567857.845 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 868
2018-04-12T21:17:37.968Z,1523567857.968 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2018-04-12T21:17:37.968Z,1523567857.968 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:37.975Z,1523567857.975 [ComponentRegistry](INFO): Shutting down CTD_NeilBrown ThreadHandler
2018-04-12T21:17:37.976Z,1523567857.976 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:37.976Z,1523567857.976 [CTD_NeilBrown](INFO): Join timeout helper Thread ID is 869
2018-04-12T21:17:38.108Z,1523567858.108 [CTD_NeilBrown ThreadHandler](INFO): Uninitializing protected caller thread.
2018-04-12T21:17:38.108Z,1523567858.108 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.123Z,1523567858.123 [ComponentRegistry](INFO): Shutting down Radio_Surface ThreadHandler
2018-04-12T21:17:38.124Z,1523567858.124 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.124Z,1523567858.124 [Radio_Surface](INFO): Join timeout helper Thread ID is 870
2018-04-12T21:17:38.183Z,1523567858.183 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2018-04-12T21:17:38.460Z,1523567858.460 [Radio_Surface ThreadHandler](INFO): Uninitializing protected caller thread.
2018-04-12T21:17:38.460Z,1523567858.460 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.480Z,1523567858.480 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2018-04-12T21:17:38.481Z,1523567858.481 [logger ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.481Z,1523567858.481 [logger](INFO): Join timeout helper Thread ID is 871
2018-04-12T21:17:38.505Z,1523567858.505 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2018-04-12T21:17:38.505Z,1523567858.505 [logger ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.512Z,1523567858.512 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2018-04-12T21:17:38.512Z,1523567858.512 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.512Z,1523567858.512 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2018-04-12T21:17:38.513Z,1523567858.513 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.513Z,1523567858.513 [controlThread](INFO): Join timeout helper Thread ID is 872
2018-04-12T21:17:38.568Z,1523567858.568 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2018-04-12T21:17:38.568Z,1523567858.568 [controlThread](DEBUG): Uninitializing ControlThread
2018-04-12T21:17:38.572Z,1523567858.572 [DVL_micro](INFO): uninitialize:Powering down
2018-04-12T21:17:38.572Z,1523567858.572 [NAL9602](INFO): Powering down
2018-04-12T21:17:38.573Z,1523567858.573 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-04-12T21:17:38.574Z,1523567858.574 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2018-04-12T21:17:38.575Z,1523567858.575 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2018-04-12T21:17:38.576Z,1523567858.576 [MissionManager](INFO): Uninitializing Mission Default
2018-04-12T21:17:38.578Z,1523567858.578 [MissionManager](INFO): Uninitializing Mission Startup
2018-04-12T21:17:38.579Z,1523567858.579 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2018-04-12T21:17:38.579Z,1523567858.579 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2018-04-12T21:17:38.580Z,1523567858.580 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2018-04-12T21:17:38.580Z,1523567858.580 [BackSeatDriver](DEBUG): Uninitialize BackSeatDriver Component.
2018-04-12T21:17:38.580Z,1523567858.580 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2018-04-12T21:17:38.580Z,1523567858.580 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-04-12T21:17:38.581Z,1523567858.581 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2018-04-12T21:17:38.581Z,1523567858.581 [MassServo](DEBUG): Uninitialize Mass Servo.
2018-04-12T21:17:38.581Z,1523567858.581 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2018-04-12T21:17:38.581Z,1523567858.581 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2018-04-12T21:17:38.582Z,1523567858.582 [SBIT](DEBUG): Uninitialize SBIT Component.
2018-04-12T21:17:38.582Z,1523567858.582 [IBIT](DEBUG): Uninitialize IBIT Component.
2018-04-12T21:17:38.582Z,1523567858.582 [CBIT](DEBUG): Uninitialize CBIT Component.
2018-04-12T21:17:38.583Z,1523567858.583 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.620Z,1523567858.620 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.656Z,1523567858.656 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.658Z,1523567858.658 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.697Z,1523567858.697 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-04-12T21:17:38.728Z,1523567858.728 [logger ThreadHandler](INFO): Thread cancelled.