2017-11-03T00:04:50.826Z,1509667490.826 [Supervisor](DEBUG): Initializing supervisor.
2017-11-03T00:04:50.829Z,1509667490.829 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2017-11-03T00:04:50.829Z,1509667490.829 [SyncHandler](INFO): Protected caller Thread ID is 4198
2017-11-03T00:04:50.829Z,1509667490.829 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2017-11-03T00:04:50.830Z,1509667490.830 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2017-11-03T00:04:50.831Z,1509667490.831 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 4199
2017-11-03T00:04:50.833Z,1509667490.833 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2017-11-03T00:04:50.844Z,1509667490.844 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2017-11-03T00:04:50.845Z,1509667490.845 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2017-11-03T00:04:50.845Z,1509667490.845 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 4200
2017-11-03T00:04:50.846Z,1509667490.846 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2017-11-03T00:04:50.847Z,1509667490.847 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2017-11-03T00:04:50.847Z,1509667490.847 [logger ThreadHandler](INFO): Protected caller Thread ID is 4201
2017-11-03T00:04:50.849Z,1509667490.849 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2017-11-03T00:04:50.850Z,1509667490.850 [Supervisor](INFO): Looking for Config files in directory: Config/
2017-11-03T00:04:50.851Z,1509667490.851 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2017-11-03T00:04:50.945Z,1509667490.945 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2017-11-03T00:04:50.945Z,1509667490.945 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2017-11-03T00:04:51.045Z,1509667491.045 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2017-11-03T00:04:51.045Z,1509667491.045 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2017-11-03T00:04:51.222Z,1509667491.222 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2017-11-03T00:04:51.222Z,1509667491.222 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2017-11-03T00:04:51.470Z,1509667491.470 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2017-11-03T00:04:51.470Z,1509667491.470 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2017-11-03T00:04:51.773Z,1509667491.773 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2017-11-03T00:04:51.773Z,1509667491.773 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2017-11-03T00:04:52.191Z,1509667492.191 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2017-11-03T00:04:52.191Z,1509667492.191 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2017-11-03T00:04:52.504Z,1509667492.504 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2017-11-03T00:04:52.505Z,1509667492.505 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2017-11-03T00:04:52.898Z,1509667492.898 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2017-11-03T00:04:52.898Z,1509667492.898 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2017-11-03T00:04:52.978Z,1509667492.978 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2017-11-03T00:04:53.251Z,1509667493.251 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2017-11-03T00:04:53.251Z,1509667493.251 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2017-11-03T00:04:53.377Z,1509667493.377 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2017-11-03T00:04:53.377Z,1509667493.377 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2017-11-03T00:04:53.586Z,1509667493.586 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2017-11-03T00:04:53.586Z,1509667493.586 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2017-11-03T00:04:54.126Z,1509667494.126 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2017-11-03T00:04:54.127Z,1509667494.127 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2017-11-03T00:04:54.221Z,1509667494.221 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2017-11-03T00:04:54.222Z,1509667494.222 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2017-11-03T00:04:54.354Z,1509667494.354 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2017-11-03T00:04:54.356Z,1509667494.356 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-makai/
2017-11-03T00:04:54.357Z,1509667494.357 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Battery.cfg
2017-11-03T00:04:54.576Z,1509667494.576 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2017-11-03T00:04:54.576Z,1509667494.576 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/logger.cfg
2017-11-03T00:04:54.652Z,1509667494.652 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Science.cfg
2017-11-03T00:04:54.786Z,1509667494.786 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Control.cfg
2017-11-03T00:04:54.876Z,1509667494.876 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Simulator.cfg
2017-11-03T00:04:54.959Z,1509667494.959 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Sensor.cfg
2017-11-03T00:04:55.090Z,1509667495.090 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/vehicle.cfg
2017-11-03T00:04:55.246Z,1509667495.246 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Servo.cfg
2017-11-03T00:04:55.340Z,1509667495.340 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Navigation.cfg
2017-11-03T00:04:55.430Z,1509667495.430 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/BIT.cfg
2017-11-03T00:04:55.524Z,1509667495.524 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/secure.cfg
2017-11-03T00:04:55.606Z,1509667495.606 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-makai/root/
2017-11-03T00:04:55.607Z,1509667495.607 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2017-11-03T00:04:55.610Z,1509667495.610 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2017-11-03T00:04:55.706Z,1509667495.706 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2017-11-03T00:04:55.706Z,1509667495.706 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2017-11-03T00:04:55.719Z,1509667495.719 [Module Loader](CRITICAL): Could not find element LcmListener.loadAtStartup
2017-11-03T00:04:55.719Z,1509667495.719 [Module Loader](CRITICAL): Could not find element LcmPublisher.loadAtStartup
2017-11-03T00:04:55.719Z,1509667495.719 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2017-11-03T00:04:55.720Z,1509667495.720 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2017-11-03T00:04:55.744Z,1509667495.744 [DepthRateCalculator] Loaded
2017-11-03T00:04:55.744Z,1509667495.744 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2017-11-03T00:04:55.750Z,1509667495.750 [PitchRateCalculator] Loaded
2017-11-03T00:04:55.750Z,1509667495.750 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2017-11-03T00:04:55.766Z,1509667495.766 [SpeedCalculator] Loaded
2017-11-03T00:04:55.766Z,1509667495.766 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2017-11-03T00:04:55.786Z,1509667495.786 [TempGradientCalculator] Loaded
2017-11-03T00:04:55.787Z,1509667495.787 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2017-11-03T00:04:55.801Z,1509667495.801 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2017-11-03T00:04:55.802Z,1509667495.802 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2017-11-03T00:04:55.807Z,1509667495.807 [YawRateCalculator] Loaded
2017-11-03T00:04:55.807Z,1509667495.807 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2017-11-03T00:04:55.808Z,1509667495.808 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2017-11-03T00:04:55.808Z,1509667495.808 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2017-11-03T00:04:55.832Z,1509667495.832 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2017-11-03T00:04:55.833Z,1509667495.833 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2017-11-03T00:04:56.074Z,1509667496.074 [AcousticModem_Benthos_ATM900] Loaded
2017-11-03T00:04:56.074Z,1509667496.074 [ComponentRegistry](DEBUG): SyncComponent "AcousticModem_Benthos_ATM900" handled in the control thread.
2017-11-03T00:04:56.144Z,1509667496.144 [DataOverHttps] Loaded
2017-11-03T00:04:56.145Z,1509667496.145 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2017-11-03T00:04:56.158Z,1509667496.158 [Depth_Keller] Loaded
2017-11-03T00:04:56.158Z,1509667496.158 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2017-11-03T00:04:56.163Z,1509667496.163 [DropWeight] Loaded
2017-11-03T00:04:56.163Z,1509667496.163 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2017-11-03T00:04:56.258Z,1509667496.258 [NAL9602] Loaded
2017-11-03T00:04:56.258Z,1509667496.258 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2017-11-03T00:04:56.274Z,1509667496.274 [Onboard] Loaded
2017-11-03T00:04:56.274Z,1509667496.274 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2017-11-03T00:04:56.284Z,1509667496.284 [Radio_Surface] Loaded
2017-11-03T00:04:56.284Z,1509667496.284 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2017-11-03T00:04:56.285Z,1509667496.285 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 407A44E0
2017-11-03T00:04:56.286Z,1509667496.286 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 4280
2017-11-03T00:04:56.331Z,1509667496.331 [PNI_TCM] Loaded
2017-11-03T00:04:56.331Z,1509667496.331 [ComponentRegistry](DEBUG): SyncComponent "PNI_TCM" handled in the control thread.
2017-11-03T00:04:56.390Z,1509667496.390 [Rowe_600LCM] Loaded
2017-11-03T00:04:56.390Z,1509667496.390 [ComponentRegistry](DEBUG): Component "Rowe_600LCM" handled in its own thread.
2017-11-03T00:04:56.391Z,1509667496.391 [Rowe_600LCM ThreadHandler](DEBUG): Created PCaller Thread at 407D44E0
2017-11-03T00:04:56.392Z,1509667496.392 [Rowe_600LCM ThreadHandler](INFO): Protected caller Thread ID is 4281
2017-11-03T00:04:56.392Z,1509667496.392 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2017-11-03T00:04:56.393Z,1509667496.393 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2017-11-03T00:04:56.519Z,1509667496.519 [SBIT](DEBUG): Construct Startup Built In Test.
2017-11-03T00:04:56.545Z,1509667496.545 [SBIT] Loaded
2017-11-03T00:04:56.546Z,1509667496.546 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2017-11-03T00:04:56.546Z,1509667496.546 [IBIT](DEBUG): Construct Initiated Built In Test.
2017-11-03T00:04:56.558Z,1509667496.558 [IBIT] Loaded
2017-11-03T00:04:56.558Z,1509667496.558 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2017-11-03T00:04:56.561Z,1509667496.561 [CBIT](DEBUG): Construct Continuous Built In Test.
2017-11-03T00:04:56.704Z,1509667496.704 [CBIT] Loaded
2017-11-03T00:04:56.704Z,1509667496.704 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2017-11-03T00:04:56.704Z,1509667496.704 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2017-11-03T00:04:56.705Z,1509667496.705 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2017-11-03T00:04:56.833Z,1509667496.833 [Aanderaa_O2] Loaded
2017-11-03T00:04:56.833Z,1509667496.833 [ComponentRegistry](DEBUG): SyncComponent "Aanderaa_O2" handled in the control thread.
2017-11-03T00:04:56.909Z,1509667496.909 [CTD_NeilBrown] Loaded
2017-11-03T00:04:56.909Z,1509667496.909 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2017-11-03T00:04:56.910Z,1509667496.910 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 408944E0
2017-11-03T00:04:56.910Z,1509667496.910 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 4282
2017-11-03T00:04:56.926Z,1509667496.926 [ESPComponent] Loaded
2017-11-03T00:04:56.927Z,1509667496.927 [ComponentRegistry](DEBUG): SyncComponent "ESPComponent" handled in the control thread.
2017-11-03T00:04:56.940Z,1509667496.940 [PAR_Licor] Loaded
2017-11-03T00:04:56.940Z,1509667496.940 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2017-11-03T00:04:56.988Z,1509667496.988 [WetLabsBB2FL] Loaded
2017-11-03T00:04:56.989Z,1509667496.989 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2017-11-03T00:04:56.990Z,1509667496.990 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 408C44E0
2017-11-03T00:04:56.990Z,1509667496.990 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 4283
2017-11-03T00:04:56.990Z,1509667496.990 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2017-11-03T00:04:56.991Z,1509667496.991 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2017-11-03T00:04:57.222Z,1509667497.222 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2017-11-03T00:04:57.222Z,1509667497.222 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2017-11-03T00:04:57.288Z,1509667497.288 [VerticalControl](DEBUG): Construct VerticalControl.
2017-11-03T00:04:57.382Z,1509667497.382 [VerticalControl] Loaded
2017-11-03T00:04:57.383Z,1509667497.383 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2017-11-03T00:04:57.383Z,1509667497.383 [HorizontalControl](DEBUG): Construct HorizontalControl.
2017-11-03T00:04:57.442Z,1509667497.442 [HorizontalControl] Loaded
2017-11-03T00:04:57.442Z,1509667497.442 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2017-11-03T00:04:57.443Z,1509667497.443 [SpeedControl](DEBUG): Construct SpeedControl.
2017-11-03T00:04:57.448Z,1509667497.448 [SpeedControl] Loaded
2017-11-03T00:04:57.448Z,1509667497.448 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2017-11-03T00:04:57.449Z,1509667497.449 [LoopControl](DEBUG): Construct LoopControl.
2017-11-03T00:04:57.450Z,1509667497.450 [LoopControl] Loaded
2017-11-03T00:04:57.450Z,1509667497.450 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2017-11-03T00:04:57.450Z,1509667497.450 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2017-11-03T00:04:57.451Z,1509667497.451 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2017-11-03T00:04:57.531Z,1509667497.531 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2017-11-03T00:04:57.531Z,1509667497.531 [StratificationFrontDetector](DEBUG): (re)initializing
2017-11-03T00:04:57.531Z,1509667497.531 [StratificationFrontDetector] Loaded
2017-11-03T00:04:57.531Z,1509667497.531 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2017-11-03T00:04:57.532Z,1509667497.532 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2017-11-03T00:04:57.532Z,1509667497.532 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2017-11-03T00:04:57.627Z,1509667497.627 [BuoyancyServo] Loaded
2017-11-03T00:04:57.628Z,1509667497.628 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2017-11-03T00:04:57.638Z,1509667497.638 [ElevatorServo] Loaded
2017-11-03T00:04:57.639Z,1509667497.639 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2017-11-03T00:04:57.649Z,1509667497.649 [MassServo] Loaded
2017-11-03T00:04:57.649Z,1509667497.649 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2017-11-03T00:04:57.660Z,1509667497.660 [RudderServo] Loaded
2017-11-03T00:04:57.660Z,1509667497.660 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2017-11-03T00:04:57.670Z,1509667497.670 [ThrusterServo] Loaded
2017-11-03T00:04:57.671Z,1509667497.671 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2017-11-03T00:04:57.671Z,1509667497.671 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2017-11-03T00:04:57.671Z,1509667497.671 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2017-11-03T00:04:57.765Z,1509667497.765 [DeadReckonUsingMultipleVelocitySources] Loaded
2017-11-03T00:04:57.766Z,1509667497.766 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2017-11-03T00:04:57.819Z,1509667497.819 [DeadReckonUsingSpeedCalculator] Loaded
2017-11-03T00:04:57.819Z,1509667497.819 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2017-11-03T00:04:57.835Z,1509667497.835 [NavChart] Loaded
2017-11-03T00:04:57.835Z,1509667497.835 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2017-11-03T00:04:57.839Z,1509667497.839 [UniversalFixResidualReporter] Loaded
2017-11-03T00:04:57.839Z,1509667497.839 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2017-11-03T00:04:57.839Z,1509667497.839 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2017-11-03T00:04:57.843Z,1509667497.843 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2017-11-03T00:04:57.844Z,1509667497.844 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2017-11-03T00:04:57.850Z,1509667497.850 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2017-11-03T00:04:57.851Z,1509667497.851 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 40A154E0
2017-11-03T00:04:57.852Z,1509667497.852 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 4284
2017-11-03T00:04:57.856Z,1509667497.856 [Supervisor](INFO): Main Thread ID is 4058
2017-11-03T00:04:57.856Z,1509667497.856 [Supervisor](DEBUG): Running supervisor.
2017-11-03T00:04:57.857Z,1509667497.857 [CommandLine ThreadHandler](INFO): Handler Thread ID is 4285
2017-11-03T00:04:57.860Z,1509667497.860 [controlThread ThreadHandler](INFO): Handler Thread ID is 4286
2017-11-03T00:04:57.860Z,1509667497.860 [controlThread](DEBUG): Initializing ControlThread
2017-11-03T00:04:57.861Z,1509667497.861 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2017-11-03T00:04:57.861Z,1509667497.861 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2017-11-03T00:04:57.862Z,1509667497.862 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2017-11-03T00:04:57.862Z,1509667497.862 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2017-11-03T00:04:57.863Z,1509667497.863 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2017-11-03T00:04:57.863Z,1509667497.863 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2017-11-03T00:04:57.867Z,1509667497.867 [SBIT](INFO): Initialize SBIT Component.
2017-11-03T00:04:57.867Z,1509667497.867 [SBIT](IMPORTANT): git: 2017-10-16-91-g1cda494
2017-11-03T00:04:57.867Z,1509667497.867 [SBIT](INFO): git hash: 1cda4942dadce3e3c6eb9510eb040eaf1a2b49d6
2017-11-03T00:04:57.868Z,1509667497.868 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2017-11-03T00:04:57.869Z,1509667497.869 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #639 PREEMPT Wed Mar 12 12:53:33 PDT 2014
Kernel Reported: #17 PREEMPT Fri Oct 6 17:22:04 PDT 2017
2017-11-03T00:04:57.870Z,1509667497.870 [SBIT](INFO): Beginning SBIT in 63.000000 seconds.
2017-11-03T00:04:57.870Z,1509667497.870 [IBIT](INFO): Initialize IBIT Component.
2017-11-03T00:04:57.871Z,1509667497.871 [CBIT](DEBUG): Initialize CBIT Component.
2017-11-03T00:04:57.871Z,1509667497.871 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2017-11-03T00:04:57.872Z,1509667497.872 [logger ThreadHandler](INFO): Handler Thread ID is 4287
2017-11-03T00:04:57.889Z,1509667497.889 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 4288
2017-11-03T00:04:57.895Z,1509667497.895 [Radio_Surface](INFO): Powering up
2017-11-03T00:04:57.901Z,1509667497.901 [Rowe_600LCM ThreadHandler](INFO): Handler Thread ID is 4289
2017-11-03T00:04:57.902Z,1509667497.902 [Rowe_600LCM](INFO): Initializing
2017-11-03T00:04:57.902Z,1509667497.902 [Rowe_600LCM](INFO): Checking LCM
2017-11-03T00:04:57.911Z,1509667497.911 [Rowe_600LCM](INFO): LCM OK
2017-11-03T00:04:57.911Z,1509667497.911 [Rowe_600LCM](INFO): Powering up
2017-11-03T00:04:57.917Z,1509667497.917 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 4290
2017-11-03T00:04:57.918Z,1509667497.918 [CTD_NeilBrown](INFO): Powering down
2017-11-03T00:04:57.945Z,1509667497.945 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 4291
2017-11-03T00:04:57.946Z,1509667497.946 [WetLabsBB2FL](INFO): Powering down
2017-11-03T00:04:57.969Z,1509667497.969 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2017-11-03T00:04:57.971Z,1509667497.971 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2017-11-03T00:04:57.971Z,1509667497.971 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2017-11-03T00:04:57.972Z,1509667497.972 [LoopControl](DEBUG): Initialize LoopControlComponent.
2017-11-03T00:04:57.982Z,1509667497.982 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2017-11-03T00:04:57.983Z,1509667497.983 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2017-11-03T00:04:57.983Z,1509667497.983 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2017-11-03T00:04:57.983Z,1509667497.983 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2017-11-03T00:04:57.984Z,1509667497.984 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2017-11-03T00:04:57.989Z,1509667497.989 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 4292
2017-11-03T00:04:57.992Z,1509667497.992 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2017-11-03T00:04:57.992Z,1509667497.992 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2017-11-03T00:04:57.993Z,1509667497.993 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2017-11-03T00:04:57.993Z,1509667497.993 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2017-11-03T00:04:57.993Z,1509667497.993 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2017-11-03T00:04:57.993Z,1509667497.993 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2017-11-03T00:04:57.993Z,1509667497.993 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2017-11-03T00:04:57.994Z,1509667497.994 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2017-11-03T00:04:57.994Z,1509667497.994 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2017-11-03T00:04:57.994Z,1509667497.994 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2017-11-03T00:04:57.994Z,1509667497.994 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2017-11-03T00:04:57.994Z,1509667497.994 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2017-11-03T00:04:57.995Z,1509667497.995 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2017-11-03T00:04:57.995Z,1509667497.995 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2017-11-03T00:04:57.995Z,1509667497.995 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2017-11-03T00:04:57.995Z,1509667497.995 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2017-11-03T00:04:58.012Z,1509667498.012 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2017-11-03T00:04:58.013Z,1509667498.013 [NavChart](DEBUG): Initialize NavChart Navigation.
2017-11-03T00:04:58.013Z,1509667498.013 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2017-11-03T00:04:58.014Z,1509667498.014 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2017-11-03T00:04:58.040Z,1509667498.040 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2017-11-03T00:04:58.089Z,1509667498.089 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2017-11-03T00:04:58.090Z,1509667498.090 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2017-11-03T00:04:58.140Z,1509667498.140 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2017-11-03T00:04:58.157Z,1509667498.157 [Default:A.Wait](DEBUG): Construct Wait.
2017-11-03T00:04:58.159Z,1509667498.159 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2017-11-03T00:04:58.184Z,1509667498.184 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2017-11-03T00:04:58.186Z,1509667498.186 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2017-11-03T00:04:58.230Z,1509667498.230 [Default:E.Execute](DEBUG): Construct Execute.
2017-11-03T00:04:58.233Z,1509667498.233 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Sequence/>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2017-11-03T00:04:58.245Z,1509667498.245 [controlThread](DEBUG): Component order: CycleStarter,AcousticModem_Benthos_ATM900,DataOverHttps,Depth_Keller,DropWeight,NAL9602,Onboard,PNI_TCM,Aanderaa_O2,ESPComponent,PAR_Licor,Depth_Keller,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2017-11-03T00:04:58.276Z,1509667498.276 [AcousticModem_Benthos_ATM900](INFO): Powering up
2017-11-03T00:04:58.276Z,1509667498.276 [AcousticModem_Benthos_ATM900](DEBUG): Initializing AcousticModem_Benthos_ATM900.
2017-11-03T00:04:58.307Z,1509667498.307 [DataOverHttps](DEBUG): dashIP=134.89.2.23 starts with a digit so assuming it is a numeric IP
2017-11-03T00:04:58.539Z,1509667498.539 [ESPComponent](INFO): powering down ESP
2017-11-03T00:04:59.326Z,1509667499.326 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:04:59.349Z,1509667499.349 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:04:59.474Z,1509667499.474 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2017-11-03T00:04:59.481Z,1509667499.481 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2017-11-03T00:04:59.503Z,1509667499.503 [ElevatorServo](DEBUG): Initializing EZServoServo.
2017-11-03T00:04:59.509Z,1509667499.509 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2017-11-03T00:04:59.531Z,1509667499.531 [MassServo](DEBUG): Initializing EZServoServo.
2017-11-03T00:04:59.537Z,1509667499.537 [MassServo](DEBUG): Initializing MassServo.
2017-11-03T00:04:59.551Z,1509667499.551 [RudderServo](DEBUG): Initializing EZServoServo.
2017-11-03T00:04:59.553Z,1509667499.553 [RudderServo](DEBUG): Initializing RudderServo.
2017-11-03T00:04:59.574Z,1509667499.574 [ThrusterServo](DEBUG): Initializing EZServoServo.
2017-11-03T00:04:59.581Z,1509667499.581 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2017-11-03T00:04:59.625Z,1509667499.625 [CommandLine](FAULT): Scheduling is paused
2017-11-03T00:04:59.626Z,1509667499.626 [CBIT](INFO): Critical error at 20171103T000455
2017-11-03T00:04:59.626Z,1509667499.626 [Supervisor](INFO): Stop Mission called by CBIT::checkCriticals
2017-11-03T00:04:59.822Z,1509667499.822 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:04:59.824Z,1509667499.824 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:00.136Z,1509667500.136 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:00.153Z,1509667500.153 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:00.591Z,1509667500.591 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:00.592Z,1509667500.592 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:01.105Z,1509667501.105 [Aanderaa_O2](INFO): Powering down
2017-11-03T00:05:01.204Z,1509667501.204 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:01.209Z,1509667501.209 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:01.400Z,1509667501.400 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:01.417Z,1509667501.417 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:01.820Z,1509667501.820 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:01.821Z,1509667501.821 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:02.199Z,1509667502.199 [Rowe_600LCM](INFO): Stopping potential previous instance(s) of Rowe LCM interface
2017-11-03T00:05:02.241Z,1509667502.241 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:02.242Z,1509667502.242 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2017-11-03T00:05:02.335Z,1509667502.335 [Rowe_600LCM](INFO): Started Rowe LCM interface with command:nohup ./lrauv-framework/onboard/bin/roweadcp -ldir /mnt/mmc/LRAUV/Logs/latest/ -dev /dev/ttyB4 -b 38400 >& /dev/null &
2017-11-03T00:05:02.374Z,1509667502.374 [Rowe_600LCM](INFO): LCM subscribed to channel:Rowe_600LCM.adcp_dvl.bottom_track
2017-11-03T00:05:02.374Z,1509667502.374 [Rowe_600LCM](INFO): LCM subscribed to channel:Rowe_600LCM.adcp_dvl.vehicle_water_velocity
2017-11-03T00:05:02.375Z,1509667502.375 [Rowe_600LCM](INFO): LCM subscribed to channel:rowe_dvl.rowe
2017-11-03T00:05:18.548Z,1509667518.548 [AcousticModem_Benthos_ATM900](FAULT): failed to initialize, no bytes available on serial interface
2017-11-03T00:05:18.548Z,1509667518.548 [AcousticModem_Benthos_ATM900] Communications Fault, FailCount= 1
2017-11-03T00:05:18.548Z,1509667518.548 [AcousticModem_Benthos_ATM900](ERROR): Communications Fault
2017-11-03T00:05:18.709Z,1509667518.709 [CBIT](ERROR): Communications Fault in component: AcousticModem_Benthos_ATM900
2017-11-03T00:05:18.948Z,1509667518.948 [AcousticModem_Benthos_ATM900](INFO): Powering down
2017-11-03T00:05:19.882Z,1509667519.882 [CBIT](INFO): Clearing failed state for component AcousticModem_Benthos_ATM900
2017-11-03T00:05:19.882Z,1509667519.882 [AcousticModem_Benthos_ATM900] No Fault, FailCount= 1
2017-11-03T00:05:22.148Z,1509667522.148 [AcousticModem_Benthos_ATM900](INFO): Powering up
2017-11-03T00:05:22.148Z,1509667522.148 [AcousticModem_Benthos_ATM900](DEBUG): Initializing AcousticModem_Benthos_ATM900.
2017-11-03T00:05:26.554Z,1509667526.554 [NAL9602](INFO): Powering up NAL9602
2017-11-03T00:05:37.754Z,1509667537.754 [NAL9602](INFO): NAL9602 initialized
2017-11-03T00:05:42.548Z,1509667542.548 [AcousticModem_Benthos_ATM900](FAULT): failed to initialize, no bytes available on serial interface
2017-11-03T00:05:42.548Z,1509667542.548 [AcousticModem_Benthos_ATM900] Communications Fault, FailCount= 2
2017-11-03T00:05:42.548Z,1509667542.548 [AcousticModem_Benthos_ATM900](ERROR): Communications Fault
2017-11-03T00:05:42.669Z,1509667542.669 [CBIT](ERROR): Communications Fault in component: AcousticModem_Benthos_ATM900
2017-11-03T00:05:42.948Z,1509667542.948 [AcousticModem_Benthos_ATM900](INFO): Powering down
2017-11-03T00:05:43.843Z,1509667543.843 [CBIT](INFO): Clearing failed state for component AcousticModem_Benthos_ATM900
2017-11-03T00:05:43.843Z,1509667543.843 [AcousticModem_Benthos_ATM900] No Fault, FailCount= 2
2017-11-03T00:05:46.148Z,1509667546.148 [AcousticModem_Benthos_ATM900](INFO): Powering up
2017-11-03T00:05:46.148Z,1509667546.148 [AcousticModem_Benthos_ATM900](DEBUG): Initializing AcousticModem_Benthos_ATM900.
2017-11-03T00:05:51.825Z,1509667551.825 [CBIT](FAULT): WATER ALARM BOW.
2017-11-03T00:05:51.827Z,1509667551.827 [CBIT](ERROR): WATER DETECTED IN PRESSURE HULL. Alarm Count: 1
2017-11-03T00:05:52.203Z,1509667552.203 [CBIT](FAULT): WATER ALARM BOW.
2017-11-03T00:05:52.204Z,1509667552.204 [CBIT](ERROR): WATER DETECTED IN PRESSURE HULL. Alarm Count: 2
2017-11-03T00:05:52.609Z,1509667552.609 [CBIT](FAULT): WATER ALARM BOW.
2017-11-03T00:05:52.610Z,1509667552.610 [CBIT](ERROR): WATER DETECTED IN PRESSURE HULL. Alarm Count: 3
2017-11-03T00:05:53.005Z,1509667553.005 [CBIT](FAULT): WATER ALARM BOW.
2017-11-03T00:05:53.029Z,1509667553.029 [CBIT](CRITICAL): WATER DETECTED IN PRESSURE HULL. BURNWIRE ACTIVATED
2017-11-03T00:05:53.031Z,1509667553.031 [CBIT](IMPORTANT): Powered off ESP with command: ! echo 0 > /dev/loadA6
2017-11-03T00:05:53.085Z,1509667553.085 [CommandLine](IMPORTANT): got command ! echo 0 > /dev/loadA6
2017-11-03T00:05:53.447Z,1509667553.447 [CBIT](INFO): Critical error at 20171103T000553
2017-11-03T00:06:01.441Z,1509667561.441 [SBIT](IMPORTANT): Beginning Startup BIT
2017-11-03T00:06:01.446Z,1509667561.446 [CBIT](IMPORTANT): Beginning ground fault scan
2017-11-03T00:06:06.252Z,1509667566.252 [AcousticModem_Benthos_ATM900](FAULT): failed to initialize, no bytes available on serial interface
2017-11-03T00:06:06.252Z,1509667566.252 [AcousticModem_Benthos_ATM900] Communications Fault, FailCount= 3
2017-11-03T00:06:06.252Z,1509667566.252 [AcousticModem_Benthos_ATM900](ERROR): Communications Fault
2017-11-03T00:06:06.509Z,1509667566.509 [CBIT](ERROR): Communications Fault in component: AcousticModem_Benthos_ATM900
2017-11-03T00:06:06.652Z,1509667566.652 [AcousticModem_Benthos_ATM900](INFO): Powering down
2017-11-03T00:06:07.566Z,1509667567.566 [CBIT](INFO): Clearing failed state for component AcousticModem_Benthos_ATM900
2017-11-03T00:06:07.566Z,1509667567.566 [AcousticModem_Benthos_ATM900] No Fault, FailCount= 3
2017-11-03T00:06:09.852Z,1509667569.852 [AcousticModem_Benthos_ATM900](INFO): Powering up
2017-11-03T00:06:09.852Z,1509667569.852 [AcousticModem_Benthos_ATM900](DEBUG): Initializing AcousticModem_Benthos_ATM900.
2017-11-03T00:06:12.352Z,1509667572.352 [CBIT](IMPORTANT): Ground fault detected
mA:
CHAN A0 (Batt): -0.007984
CHAN A1 (24V): 0.123128
CHAN A2 (12V): -0.005294
CHAN A3 (5V): -0.003219
CHAN B0 (3.3V): -0.000826
CHAN B1 (3.15aV): -0.000805
CHAN B2 (3.15bV): -0.001085
CHAN B3 (GND): 0.000041
OPEN: 0.005303
Full Scale Calc: 4.765 mA, -1.589 mA
2017-11-03T00:06:30.064Z,1509667590.064 [AcousticModem_Benthos_ATM900](FAULT): failed to initialize, no bytes available on serial interface
2017-11-03T00:06:30.064Z,1509667590.064 [AcousticModem_Benthos_ATM900] Communications Fault, FailCount= 4
2017-11-03T00:06:30.064Z,1509667590.064 [AcousticModem_Benthos_ATM900](ERROR): Communications Fault
2017-11-03T00:06:30.156Z,1509667590.156 [CBIT](ERROR): Communications Fault in component: AcousticModem_Benthos_ATM900
2017-11-03T00:06:30.464Z,1509667590.464 [AcousticModem_Benthos_ATM900](INFO): Powering down
2017-11-03T00:06:31.325Z,1509667591.325 [CBIT](INFO): Clearing failed state for component AcousticModem_Benthos_ATM900
2017-11-03T00:06:31.325Z,1509667591.325 [AcousticModem_Benthos_ATM900] No Fault, FailCount= 4
2017-11-03T00:06:33.664Z,1509667593.664 [AcousticModem_Benthos_ATM900](INFO): Powering up
2017-11-03T00:06:33.664Z,1509667593.664 [AcousticModem_Benthos_ATM900](DEBUG): Initializing AcousticModem_Benthos_ATM900.
2017-11-03T00:06:39.997Z,1509667599.997 [CommandLine](IMPORTANT): got command failComponent
2017-11-03T00:06:39.998Z,1509667599.998 [CommandLine](IMPORTANT): Failed components:
2017-11-03T00:06:39.998Z,1509667599.998 [CommandLine](IMPORTANT): No failed Components.
2017-11-03T00:06:45.917Z,1509667605.917 [CommandLine](IMPORTANT): got command get platform_magnetic_orientation
2017-11-03T00:06:45.918Z,1509667605.918 [CommandLine](IMPORTANT): platform_magnetic_orientation 4.521320 rad
2017-11-03T00:06:50.233Z,1509667610.233 [CommandLine](IMPORTANT): got command get platform_magnetic_orientation degree
2017-11-03T00:06:50.234Z,1509667610.234 [CommandLine](IMPORTANT): platform_magnetic_orientation 259.084511 arcdeg
2017-11-03T00:06:53.818Z,1509667613.818 [AcousticModem_Benthos_ATM900](FAULT): failed to initialize, no bytes available on serial interface
2017-11-03T00:06:53.818Z,1509667613.818 [AcousticModem_Benthos_ATM900] Communications Fault, FailCount= 5
2017-11-03T00:06:53.818Z,1509667613.818 [AcousticModem_Benthos_ATM900](ERROR): Communications Fault
2017-11-03T00:06:53.982Z,1509667613.982 [CBIT](ERROR): Communications Fault in component: AcousticModem_Benthos_ATM900
2017-11-03T00:06:54.217Z,1509667614.217 [AcousticModem_Benthos_ATM900](INFO): Powering down
2017-11-03T00:06:55.142Z,1509667615.142 [SBIT](IMPORTANT): SBIT PASSED
2017-11-03T00:06:55.150Z,1509667615.150 [CBIT](INFO): Clearing failed state for component AcousticModem_Benthos_ATM900
2017-11-03T00:06:55.151Z,1509667615.151 [AcousticModem_Benthos_ATM900] No Fault, FailCount= 5
2017-11-03T00:06:55.465Z,1509667615.465 [MissionManager](IMPORTANT): Started mission Startup
2017-11-03T00:06:55.466Z,1509667615.466 [Startup] Running Loop=1
2017-11-03T00:06:55.466Z,1509667615.466 [Startup](DEBUG): Aggregate::initialize Startup
2017-11-03T00:06:55.466Z,1509667615.466 [Startup:A.GoToSurface] Running Loop=1
2017-11-03T00:06:55.466Z,1509667615.466 [Startup:A.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2017-11-03T00:06:55.467Z,1509667615.467 [Startup:A.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2017-11-03T00:06:55.467Z,1509667615.467 [Startup:A.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2017-11-03T00:06:55.467Z,1509667615.467 [Startup:A.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2017-11-03T00:06:55.468Z,1509667615.468 [Startup:A.GoToSurface](DEBUG): No pitch timeout specified. Using default value of 20.000000 seconds.
2017-11-03T00:06:55.468Z,1509667615.468 [Startup:A.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2017-11-03T00:06:55.475Z,1509667615.475 [Startup:StartupSatComms] Running Loop=1
2017-11-03T00:06:55.475Z,1509667615.475 [Startup:StartupSatComms](DEBUG): Aggregate::initialize Startup:StartupSatComms
2017-11-03T00:06:55.476Z,1509667615.476 [Startup:StartupSatComms:A] Running Loop=1
2017-11-03T00:06:55.866Z,1509667615.866 [Startup:StartupSatComms:A](DEBUG): Initialize ReadDataComponent to sense latitude_fix
2017-11-03T00:06:55.966Z,1509667615.966 [CommandLine](IMPORTANT): got command restart application
2017-11-03T00:06:56.975Z,1509667616.975 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2017-11-03T00:06:56.975Z,1509667616.975 [CommandLine ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:57.073Z,1509667617.073 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2017-11-03T00:06:57.073Z,1509667617.073 [CommandLine ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:57.073Z,1509667617.073 [CommandLine](INFO): Join timeout helper Thread ID is 4319
2017-11-03T00:06:57.075Z,1509667617.075 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2017-11-03T00:06:57.075Z,1509667617.075 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:57.076Z,1509667617.076 [NavChartDb](INFO): Join timeout helper Thread ID is 4320
2017-11-03T00:06:57.125Z,1509667617.125 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2017-11-03T00:06:57.125Z,1509667617.125 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:57.133Z,1509667617.133 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2017-11-03T00:06:57.133Z,1509667617.133 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:57.134Z,1509667617.134 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 4321
2017-11-03T00:06:57.273Z,1509667617.273 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2017-11-03T00:06:57.273Z,1509667617.273 [WetLabsBB2FL](INFO): Powering down
2017-11-03T00:06:57.274Z,1509667617.274 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:57.280Z,1509667617.280 [ComponentRegistry](INFO): Shutting down CTD_NeilBrown ThreadHandler
2017-11-03T00:06:57.281Z,1509667617.281 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:57.281Z,1509667617.281 [CTD_NeilBrown](INFO): Join timeout helper Thread ID is 4322
2017-11-03T00:06:57.416Z,1509667617.416 [AcousticModem_Benthos_ATM900](INFO): Powering up
2017-11-03T00:06:57.416Z,1509667617.416 [AcousticModem_Benthos_ATM900](DEBUG): Initializing AcousticModem_Benthos_ATM900.
2017-11-03T00:06:57.661Z,1509667617.661 [CTD_NeilBrown ThreadHandler](INFO): Uninitializing protected caller thread.
2017-11-03T00:06:57.661Z,1509667617.661 [CTD_NeilBrown](INFO): Powering down
2017-11-03T00:06:57.662Z,1509667617.662 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:57.672Z,1509667617.672 [ComponentRegistry](INFO): Shutting down Rowe_600LCM ThreadHandler
2017-11-03T00:06:57.673Z,1509667617.673 [Rowe_600LCM ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:57.673Z,1509667617.673 [Rowe_600LCM](INFO): Join timeout helper Thread ID is 4324
2017-11-03T00:06:57.916Z,1509667617.916 [Rowe_600LCM](FAULT): Did not receive valid device response within the specified allowable sample time.
2017-11-03T00:06:57.917Z,1509667617.917 [Rowe_600LCM] Communications Fault, FailCount= 1
2017-11-03T00:06:57.917Z,1509667617.917 [Rowe_600LCM](ERROR): Communications Fault
2017-11-03T00:06:57.917Z,1509667617.917 [Rowe_600LCM ThreadHandler](INFO): Uninitializing protected caller thread.
2017-11-03T00:06:57.918Z,1509667617.918 [Rowe_600LCM](INFO): Stopping potential previous instance(s) of roweadcp LCM interface
2017-11-03T00:06:57.999Z,1509667617.999 [CBIT](ERROR): Communications Fault in component: Rowe_600LCM
2017-11-03T00:06:58.023Z,1509667618.023 [Rowe_600LCM](INFO): Powering down
2017-11-03T00:06:58.043Z,1509667618.043 [Rowe_600LCM ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.058Z,1509667618.058 [ComponentRegistry](INFO): Shutting down Radio_Surface ThreadHandler
2017-11-03T00:06:58.058Z,1509667618.058 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.058Z,1509667618.058 [Radio_Surface](INFO): Join timeout helper Thread ID is 4326
2017-11-03T00:06:58.381Z,1509667618.381 [Radio_Surface ThreadHandler](INFO): Uninitializing protected caller thread.
2017-11-03T00:06:58.381Z,1509667618.381 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.385Z,1509667618.385 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2017-11-03T00:06:58.385Z,1509667618.385 [logger ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.386Z,1509667618.386 [logger](INFO): Join timeout helper Thread ID is 4327
2017-11-03T00:06:58.401Z,1509667618.401 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2017-11-03T00:06:58.401Z,1509667618.401 [logger ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.405Z,1509667618.405 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2017-11-03T00:06:58.405Z,1509667618.405 [CommandLine ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.406Z,1509667618.406 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2017-11-03T00:06:58.406Z,1509667618.406 [controlThread ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.406Z,1509667618.406 [controlThread](INFO): Join timeout helper Thread ID is 4328
2017-11-03T00:06:58.613Z,1509667618.613 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2017-11-03T00:06:58.613Z,1509667618.613 [controlThread](DEBUG): Uninitializing ControlThread
2017-11-03T00:06:58.613Z,1509667618.613 [AcousticModem_Benthos_ATM900](INFO): Powering down
2017-11-03T00:06:58.733Z,1509667618.733 [NAL9602](INFO): Powering down
2017-11-03T00:06:58.735Z,1509667618.735 [PNI_TCM](INFO): Powering down
2017-11-03T00:06:58.821Z,1509667618.821 [Aanderaa_O2](INFO): Powering down
2017-11-03T00:06:58.823Z,1509667618.823 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2017-11-03T00:06:58.825Z,1509667618.825 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2017-11-03T00:06:58.826Z,1509667618.826 [MissionManager](INFO): Uninitializing Mission Default
2017-11-03T00:06:58.828Z,1509667618.828 [MissionManager](INFO): Uninitializing Mission Startup
2017-11-03T00:06:58.828Z,1509667618.828 [Startup] Stopped
2017-11-03T00:06:58.828Z,1509667618.829 [Startup](DEBUG): Aggregate::uninitialize Startup
2017-11-03T00:06:58.829Z,1509667618.829 [Startup:A.GoToSurface] Stopped
2017-11-03T00:06:58.829Z,1509667618.829 [Startup:A.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2017-11-03T00:06:58.829Z,1509667618.829 [Startup:StartupSatComms] Stopped
2017-11-03T00:06:58.829Z,1509667618.829 [Startup:StartupSatComms](DEBUG): Aggregate::uninitialize Startup:StartupSatComms
2017-11-03T00:06:58.829Z,1509667618.829 [Startup:StartupSatComms:A] Stopped
2017-11-03T00:06:58.830Z,1509667618.830 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2017-11-03T00:06:58.831Z,1509667618.831 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2017-11-03T00:06:58.831Z,1509667618.831 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2017-11-03T00:06:58.831Z,1509667618.831 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2017-11-03T00:06:58.831Z,1509667618.831 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2017-11-03T00:06:58.832Z,1509667618.832 [BuoyancyServo](INFO): Powering down
2017-11-03T00:06:58.845Z,1509667618.845 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2017-11-03T00:06:58.845Z,1509667618.845 [ElevatorServo](INFO): Powering down
2017-11-03T00:06:58.846Z,1509667618.846 [MassServo](DEBUG): Uninitialize Mass Servo.
2017-11-03T00:06:58.846Z,1509667618.846 [MassServo](INFO): Powering down
2017-11-03T00:06:58.847Z,1509667618.847 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2017-11-03T00:06:58.847Z,1509667618.847 [RudderServo](INFO): Powering down
2017-11-03T00:06:58.848Z,1509667618.848 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2017-11-03T00:06:58.848Z,1509667618.848 [ThrusterServo](INFO): Powering down
2017-11-03T00:06:58.849Z,1509667618.849 [SBIT](DEBUG): Uninitialize SBIT Component.
2017-11-03T00:06:58.849Z,1509667618.849 [IBIT](DEBUG): Uninitialize IBIT Component.
2017-11-03T00:06:58.849Z,1509667618.849 [CBIT](DEBUG): Uninitialize CBIT Component.
2017-11-03T00:06:58.850Z,1509667618.850 [controlThread ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.891Z,1509667618.891 [Rowe_600LCM ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.897Z,1509667618.897 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.930Z,1509667618.930 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.935Z,1509667618.935 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:58.980Z,1509667618.980 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2017-11-03T00:06:59.028Z,1509667619.028 [logger ThreadHandler](INFO): Thread cancelled.