2017-10-16T23:28:29.442Z,1508196509.442 [Supervisor](DEBUG): Initializing supervisor.
2017-10-16T23:28:29.445Z,1508196509.445 [SyncHandler](DEBUG): Created PCaller Thread at 4051A4E0
2017-10-16T23:28:29.445Z,1508196509.445 [SyncHandler](INFO): Protected caller Thread ID is 2650
2017-10-16T23:28:29.445Z,1508196509.445 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2017-10-16T23:28:29.446Z,1508196509.446 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4054A4E0
2017-10-16T23:28:29.447Z,1508196509.447 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 2651
2017-10-16T23:28:29.450Z,1508196509.450 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2017-10-16T23:28:29.460Z,1508196509.460 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2017-10-16T23:28:29.461Z,1508196509.461 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 4057A4E0
2017-10-16T23:28:29.462Z,1508196509.462 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 2652
2017-10-16T23:28:29.463Z,1508196509.463 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2017-10-16T23:28:29.464Z,1508196509.464 [logger ThreadHandler](DEBUG): Created PCaller Thread at 405AA4E0
2017-10-16T23:28:29.464Z,1508196509.464 [logger ThreadHandler](INFO): Protected caller Thread ID is 2653
2017-10-16T23:28:29.466Z,1508196509.466 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2017-10-16T23:28:29.466Z,1508196509.466 [Supervisor](INFO): Looking for Config files in directory: Config/
2017-10-16T23:28:29.468Z,1508196509.468 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2017-10-16T23:28:29.657Z,1508196509.657 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2017-10-16T23:28:29.658Z,1508196509.658 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2017-10-16T23:28:29.772Z,1508196509.772 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2017-10-16T23:28:29.772Z,1508196509.772 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2017-10-16T23:28:29.965Z,1508196509.965 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2017-10-16T23:28:29.965Z,1508196509.965 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2017-10-16T23:28:30.234Z,1508196510.234 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2017-10-16T23:28:30.234Z,1508196510.234 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2017-10-16T23:28:30.638Z,1508196510.638 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2017-10-16T23:28:30.639Z,1508196510.639 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2017-10-16T23:28:31.096Z,1508196511.096 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2017-10-16T23:28:31.097Z,1508196511.097 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2017-10-16T23:28:31.430Z,1508196511.430 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2017-10-16T23:28:31.431Z,1508196511.431 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2017-10-16T23:28:31.991Z,1508196511.991 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2017-10-16T23:28:31.992Z,1508196511.992 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2017-10-16T23:28:32.088Z,1508196512.088 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2017-10-16T23:28:32.452Z,1508196512.452 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2017-10-16T23:28:32.453Z,1508196512.453 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2017-10-16T23:28:32.602Z,1508196512.602 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2017-10-16T23:28:32.603Z,1508196512.603 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2017-10-16T23:28:32.880Z,1508196512.880 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2017-10-16T23:28:32.881Z,1508196512.881 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2017-10-16T23:28:33.090Z,1508196513.090 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2017-10-16T23:28:33.091Z,1508196513.091 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2017-10-16T23:28:33.201Z,1508196513.201 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2017-10-16T23:28:33.201Z,1508196513.201 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2017-10-16T23:28:33.353Z,1508196513.353 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2017-10-16T23:28:33.355Z,1508196513.355 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-makai/
2017-10-16T23:28:33.356Z,1508196513.356 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Battery.cfg
2017-10-16T23:28:33.599Z,1508196513.599 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2017-10-16T23:28:33.599Z,1508196513.599 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/logger.cfg
2017-10-16T23:28:33.693Z,1508196513.693 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Science.cfg
2017-10-16T23:28:33.846Z,1508196513.846 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Control.cfg
2017-10-16T23:28:34.017Z,1508196514.017 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Simulator.cfg
2017-10-16T23:28:34.179Z,1508196514.179 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Sensor.cfg
2017-10-16T23:28:34.363Z,1508196514.363 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/vehicle.cfg
2017-10-16T23:28:34.538Z,1508196514.538 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Servo.cfg
2017-10-16T23:28:34.648Z,1508196514.648 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Navigation.cfg
2017-10-16T23:28:34.817Z,1508196514.817 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/BIT.cfg
2017-10-16T23:28:34.936Z,1508196514.936 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/secure.cfg
2017-10-16T23:28:35.101Z,1508196515.101 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-makai/root/
2017-10-16T23:28:35.102Z,1508196515.102 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2017-10-16T23:28:35.107Z,1508196515.107 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2017-10-16T23:28:35.230Z,1508196515.230 [SBIT](DEBUG): Construct Startup Built In Test.
2017-10-16T23:28:35.257Z,1508196515.257 [SBIT] Loaded
2017-10-16T23:28:35.258Z,1508196515.258 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2017-10-16T23:28:35.258Z,1508196515.258 [IBIT](DEBUG): Construct Initiated Built In Test.
2017-10-16T23:28:35.283Z,1508196515.283 [IBIT] Loaded
2017-10-16T23:28:35.284Z,1508196515.284 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2017-10-16T23:28:35.287Z,1508196515.287 [CBIT](DEBUG): Construct Continuous Built In Test.
2017-10-16T23:28:35.424Z,1508196515.424 [CBIT] Loaded
2017-10-16T23:28:35.424Z,1508196515.424 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2017-10-16T23:28:35.425Z,1508196515.425 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2017-10-16T23:28:35.428Z,1508196515.428 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2017-10-16T23:28:35.429Z,1508196515.429 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2017-10-16T23:28:35.436Z,1508196515.436 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2017-10-16T23:28:35.437Z,1508196515.437 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 406114E0
2017-10-16T23:28:35.437Z,1508196515.437 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 2733
2017-10-16T23:28:35.450Z,1508196515.450 [Supervisor](INFO): Main Thread ID is 2649
2017-10-16T23:28:35.450Z,1508196515.450 [Supervisor](DEBUG): Running supervisor.
2017-10-16T23:28:35.451Z,1508196515.451 [CommandLine ThreadHandler](INFO): Handler Thread ID is 2734
2017-10-16T23:28:35.454Z,1508196515.454 [controlThread ThreadHandler](INFO): Handler Thread ID is 2735
2017-10-16T23:28:35.454Z,1508196515.454 [controlThread](DEBUG): Initializing ControlThread
2017-10-16T23:28:35.455Z,1508196515.455 [SBIT](INFO): Initialize SBIT Component.
2017-10-16T23:28:35.456Z,1508196515.456 [SBIT](IMPORTANT): git: 2017-09-28-16-gfc4d8dc
2017-10-16T23:28:35.456Z,1508196515.456 [SBIT](INFO): git hash: fc4d8dc974620f9f70b7e6a619a5c2ec703a2a71
2017-10-16T23:28:35.456Z,1508196515.456 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2017-10-16T23:28:35.457Z,1508196515.457 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #639 PREEMPT Wed Mar 12 12:53:33 PDT 2014
Kernel Reported: #2 PREEMPT Tue Oct 3 09:53:58 PDT 2017
2017-10-16T23:28:35.458Z,1508196515.458 [SBIT](INFO): Beginning SBIT in 63.000000 seconds.
2017-10-16T23:28:35.459Z,1508196515.459 [IBIT](INFO): Initialize IBIT Component.
2017-10-16T23:28:35.459Z,1508196515.459 [CBIT](DEBUG): Initialize CBIT Component.
2017-10-16T23:28:35.460Z,1508196515.460 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2017-10-16T23:28:35.461Z,1508196515.461 [logger ThreadHandler](INFO): Handler Thread ID is 2736
2017-10-16T23:28:35.463Z,1508196515.463 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 2737
2017-10-16T23:28:35.467Z,1508196515.467 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2017-10-16T23:28:35.467Z,1508196515.467 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2017-10-16T23:28:35.468Z,1508196515.468 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2017-10-16T23:28:35.468Z,1508196515.468 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2017-10-16T23:28:35.479Z,1508196515.479 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2017-10-16T23:28:35.480Z,1508196515.480 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2017-10-16T23:28:35.480Z,1508196515.480 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2017-10-16T23:28:35.480Z,1508196515.480 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2017-10-16T23:28:35.480Z,1508196515.480 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2017-10-16T23:28:35.480Z,1508196515.480 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2017-10-16T23:28:35.480Z,1508196515.480 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2017-10-16T23:28:35.481Z,1508196515.481 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2017-10-16T23:28:35.481Z,1508196515.481 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2017-10-16T23:28:35.481Z,1508196515.481 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2017-10-16T23:28:35.481Z,1508196515.481 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2017-10-16T23:28:35.481Z,1508196515.481 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2017-10-16T23:28:35.544Z,1508196515.544 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2017-10-16T23:28:35.554Z,1508196515.554 [MissionManager](CRITICAL): Unable to find MissionComponent with name GoToSurface at Startup:A
2017-10-16T23:28:35.554Z,1508196515.554 [Startup](CRITICAL): Error!!!! no component for child behavior.
2017-10-16T23:28:35.558Z,1508196515.558 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2017-10-16T23:28:35.559Z,1508196515.559 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2017-10-16T23:28:35.604Z,1508196515.604 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2017-10-16T23:28:35.605Z,1508196515.605 [MissionManager](CRITICAL): Unable to find MissionComponent with name Wait at Default:A
2017-10-16T23:28:35.605Z,1508196515.605 [Default](CRITICAL): Error!!!! no component for child behavior.
2017-10-16T23:28:35.605Z,1508196515.605 [MissionManager](CRITICAL): Unable to find MissionComponent with name GoToSurface at Default:A
2017-10-16T23:28:35.606Z,1508196515.606 [Default](CRITICAL): Error!!!! no component for child behavior.
2017-10-16T23:28:35.625Z,1508196515.625 [MissionManager](CRITICAL): Unable to find MissionComponent with name Execute at Default:CheckIn:Read_Iridium:A_Timeout:A
2017-10-16T23:28:35.626Z,1508196515.626 [Default:CheckIn:Read_Iridium:A_Timeout](CRITICAL): Error!!!! no component for child behavior.
2017-10-16T23:28:35.627Z,1508196515.627 [MissionManager](CRITICAL): Unable to find MissionComponent with name Wait at Default:CheckIn:C
2017-10-16T23:28:35.627Z,1508196515.627 [Default:CheckIn](CRITICAL): Error!!!! no component for child behavior.
2017-10-16T23:28:35.647Z,1508196515.647 [MissionManager](CRITICAL): Unable to find MissionComponent with name Execute at Default:C
2017-10-16T23:28:35.648Z,1508196515.648 [Default](CRITICAL): Error!!!! no component for child behavior.
2017-10-16T23:28:35.650Z,1508196515.650 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Sequence/>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2017-10-16T23:28:35.652Z,1508196515.652 [controlThread](DEBUG): Component order: CycleStarter,MissionManager,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2017-10-16T23:28:35.704Z,1508196515.704 [CommandLine](FAULT): Scheduling is paused
2017-10-16T23:28:35.704Z,1508196515.704 [CBIT](INFO): Critical error at 20171016T232835
2017-10-16T23:28:35.705Z,1508196515.705 [Supervisor](INFO): Stop Mission called by CBIT::checkCriticals
2017-10-16T23:29:21.184Z,1508196561.184 [CommandLine](IMPORTANT): got command show stack
2017-10-16T23:29:21.184Z,1508196561.184 [CommandLine](IMPORTANT): Behavior Stack:

2017-10-16T23:29:21.184Z,1508196561.184 [MissionManager](IMPORTANT): Mission loaded, but not running.
2017-10-16T23:29:38.859Z,1508196578.859 [SBIT](IMPORTANT): Beginning Startup BIT
2017-10-16T23:29:38.863Z,1508196578.863 [CBIT](IMPORTANT): Beginning ground fault scan
2017-10-16T23:29:49.265Z,1508196589.265 [CBIT](IMPORTANT): No ground fault detected
mA:
CHAN A0 (Batt): -0.005533
CHAN A1 (24V): 0.003372
CHAN A2 (12V): -0.005138
CHAN A3 (5V): -0.003036
CHAN B0 (3.3V): -0.000761
CHAN B1 (3.15aV): -0.001153
CHAN B2 (3.15bV): -0.000763
CHAN B3 (GND): -0.000003
OPEN: 0.004694
Full Scale Calc: 4.765 mA, -1.589 mA
2017-10-16T23:29:52.060Z,1508196592.060 [SBIT](ERROR): Could not read elevatorAngleReader_.
2017-10-16T23:29:52.060Z,1508196592.060 [SBIT](ERROR): Could not read rudderAngleReader_.
2017-10-16T23:29:52.060Z,1508196592.060 [SBIT](ERROR): Could not read massPosReader_.
2017-10-16T23:30:18.459Z,1508196618.459 [SBIT](ERROR): Could not read elevatorAngleReader_.
2017-10-16T23:30:18.459Z,1508196618.459 [SBIT](ERROR): Could not read rudderAngleReader_.
2017-10-16T23:30:18.460Z,1508196618.460 [SBIT](ERROR): Could not read massPosReader_.
2017-10-16T23:30:18.460Z,1508196618.460 [SBIT](FAULT): Control surface position failure.
2017-10-16T23:30:32.059Z,1508196632.059 [SBIT](ERROR): Could not read elevatorAngleReader_.
2017-10-16T23:30:32.059Z,1508196632.059 [SBIT](ERROR): Could not read rudderAngleReader_.
2017-10-16T23:30:32.059Z,1508196632.059 [SBIT](ERROR): Could not read massPosReader_.
2017-10-16T23:30:32.060Z,1508196632.060 [SBIT](FAULT): Control surface position failure.
2017-10-16T23:30:32.459Z,1508196632.459 [SBIT](CRITICAL): SBIT FAILED
2017-10-16T23:30:32.460Z,1508196632.460 [CBIT](INFO): Critical error at 20171016T233032
2017-10-16T23:30:32.859Z,1508196632.859 [MissionManager](IMPORTANT): Started mission Startup
2017-10-16T23:30:32.859Z,1508196632.859 [Startup] Running Loop=1
2017-10-16T23:30:32.859Z,1508196632.859 [Startup](DEBUG): Aggregate::initialize Startup
2017-10-16T23:30:32.860Z,1508196632.860 [Startup:StartupSatComms] Running Loop=1
2017-10-16T23:30:32.860Z,1508196632.860 [Startup:StartupSatComms](DEBUG): Aggregate::initialize Startup:StartupSatComms
2017-10-16T23:30:32.860Z,1508196632.860 [Startup:StartupSatComms:A] Running Loop=1
2017-10-16T23:30:32.861Z,1508196632.861 [Startup:StartupSatComms:A](DEBUG): Initialize ReadDataComponent to sense latitude_fix
2017-10-16T23:30:36.124Z,1508196636.124 [CommandLine](IMPORTANT): got command show stack
2017-10-16T23:30:36.124Z,1508196636.124 [CommandLine](IMPORTANT): Behavior Stack:

2017-10-16T23:30:36.125Z,1508196636.125 [Startup:StartupSatComms](IMPORTANT): Priority 0: Startup:StartupSatComms:A
2017-10-16T23:31:33.259Z,1508196693.259 [Startup:StartupSatComms:A](INFO): Timed out from 2017-10-16T23:30:32.9Z
2017-10-16T23:31:33.259Z,1508196693.259 [Startup:StartupSatComms:A] Stopped
2017-10-16T23:31:33.259Z,1508196693.259 [Startup:StartupSatComms:B] Running Loop=1
2017-10-16T23:31:33.659Z,1508196693.659 [Startup:StartupSatComms:B](DEBUG): Initialize ReadDataComponent to sense platform_communications
2017-10-16T23:32:13.524Z,1508196733.524 [CommandLine](IMPORTANT): got command show stack
2017-10-16T23:32:13.524Z,1508196733.524 [CommandLine](IMPORTANT): Behavior Stack:

2017-10-16T23:32:13.525Z,1508196733.525 [Startup:StartupSatComms](IMPORTANT): Priority 0: Startup:StartupSatComms:B
2017-10-16T23:32:33.659Z,1508196753.659 [Startup:StartupSatComms:B](INFO): Timed out from 2017-10-16T23:31:33.3Z
2017-10-16T23:32:33.659Z,1508196753.659 [Startup:StartupSatComms:B] Stopped
2017-10-16T23:32:33.659Z,1508196753.659 [Startup:StartupSatComms](INFO): Completed Startup:StartupSatComms
2017-10-16T23:32:33.659Z,1508196753.659 [Startup:StartupSatComms] Stopped
2017-10-16T23:32:33.660Z,1508196753.660 [Startup:StartupSatComms](DEBUG): Aggregate::uninitialize Startup:StartupSatComms
2017-10-16T23:32:33.660Z,1508196753.660 [Startup](INFO): Completed Startup
2017-10-16T23:32:33.660Z,1508196753.660 [MissionManager](INFO): Startup is completed.
2017-10-16T23:32:33.660Z,1508196753.660 [MissionManager](INFO): Uninitializing Mission Startup
2017-10-16T23:32:33.660Z,1508196753.660 [Startup] Stopped
2017-10-16T23:32:33.660Z,1508196753.660 [Startup](DEBUG): Aggregate::uninitialize Startup
2017-10-16T23:32:34.059Z,1508196754.059 [MissionManager](IMPORTANT): Started mission Default
2017-10-16T23:32:34.059Z,1508196754.059 [Default] Running Loop=1
2017-10-16T23:32:34.059Z,1508196754.059 [Default](DEBUG): Aggregate::initialize Default
2017-10-16T23:32:34.059Z,1508196754.059 [Default:CheckIn] Running Loop=1
2017-10-16T23:32:34.059Z,1508196754.059 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2017-10-16T23:32:34.059Z,1508196754.059 [Default:CheckIn:Read_GPS] Running Loop=1
2017-10-16T23:32:34.060Z,1508196754.060 [Default:CheckIn:Read_GPS](DEBUG): Initialize ReadDataComponent to sense time_fix
2017-10-16T23:33:36.728Z,1508196816.728 [CommandLine](IMPORTANT): got command report mod WetLabsBB2FL.loadAtStartup
2017-10-16T23:33:36.863Z,1508196816.863 [Reporter](INFO): WetLabsBB2FL.loadAtStartup 1 bool
2017-10-16T23:33:51.864Z,1508196831.864 [CommandLine](IMPORTANT): got command report clear
2017-10-16T23:34:07.984Z,1508196847.984 [CommandLine](IMPORTANT): got command run ./Missions/Insert/Science.xml
2017-10-16T23:34:07.985Z,1508196847.985 [MissionManager](INFO): Loading Mission: ./Missions/Insert/Science.xml
2017-10-16T23:34:08.086Z,1508196848.086 [MissionManager](INFO): DefineArg Science.SampleISUS = 0 bool
2017-10-16T23:34:08.089Z,1508196848.089 [MissionManager](INFO): DefineArg Science.SampleISUSmaxPitch = 60.000000 arcdeg
2017-10-16T23:34:08.092Z,1508196848.092 [MissionManager](INFO): DefineArg Science.SampleISUSminPitch = -60.000000 arcdeg
2017-10-16T23:34:08.095Z,1508196848.095 [MissionManager](INFO): DefineArg Science.PeakDetectChlActive = 0 bool
2017-10-16T23:34:08.098Z,1508196848.098 [MissionManager](INFO): DefineArg Science.HighestChlPeakReportActive = 0 bool
2017-10-16T23:34:08.101Z,1508196848.101 [MissionManager](INFO): DefineArg Science.PatchTracking = 0 bool
2017-10-16T23:34:08.131Z,1508196848.131 [MissionManager](INFO): DefineArg Science.FilterWidthHorizontal = 3.000000 count
2017-10-16T23:34:08.140Z,1508196848.140 [MissionManager](INFO): DefineArg Science.NumProfilesSlidingwindow = 100.000000 count
2017-10-16T23:34:08.150Z,1508196848.150 [MissionManager](INFO): DefineArg Science.PeakDetectNO3Active = 0 bool
2017-10-16T23:34:08.152Z,1508196848.152 [MissionManager](INFO): DefineArg Science.UpwardDerivativeOfTemperatureActive = 0 bool
2017-10-16T23:34:08.155Z,1508196848.155 [MissionManager](INFO): DefineArg Science.EnabledAanderaaO2 = 1.000000 bool
2017-10-16T23:34:08.158Z,1508196848.158 [MissionManager](INFO): DefineArg Science.EnabledNeilBrown = 1.000000 bool
2017-10-16T23:34:08.163Z,1508196848.163 [MissionManager](INFO): DefineArg Science.EnabledSeabird = 0.000000 bool
2017-10-16T23:34:08.166Z,1508196848.166 [MissionManager](INFO): DefineArg Science.EnabledTurbulence_NPS = 0.000000 bool
2017-10-16T23:34:08.169Z,1508196848.169 [MissionManager](INFO): DefineArg Science.EnabledWetLabsBB2FL = 1.000000 bool
2017-10-16T23:34:08.190Z,1508196848.190 [MissionManager](INFO): DefineArg Science.EnabledISUS = 0.000000 bool
2017-10-16T23:34:08.216Z,1508196848.216 [MissionManager](INFO): DefineArg Science.LowPassWindowLength = 20.000000 count
2017-10-16T23:34:08.219Z,1508196848.219 [MissionManager](INFO): DefineArg Science.PeakChlShallowBound = nan m
2017-10-16T23:34:08.222Z,1508196848.222 [MissionManager](INFO): DefineArg Science.PeakChlDeepBound = nan m
2017-10-16T23:34:08.224Z,1508196848.224 [MissionManager](INFO): DefineOutput Science.PeakChl = 0.000000 ug/l
2017-10-16T23:34:08.227Z,1508196848.227 [MissionManager](INFO): DefineOutput Science.PeakChlDepth = 0.000000 m
2017-10-16T23:34:08.242Z,1508196848.242 [MissionManager](INFO): DefineOutput Science.PeakChlLatitude = nan arcdeg
2017-10-16T23:34:08.245Z,1508196848.245 [MissionManager](INFO): DefineOutput Science.PeakChlLongitude = nan arcdeg
2017-10-16T23:34:08.248Z,1508196848.248 [MissionManager](INFO): DefineOutput Science.PeakNO3 = 0.000000 umol/l
2017-10-16T23:34:08.251Z,1508196848.251 [MissionManager](INFO): DefineOutput Science.PeakNO3Depth = 0.000000 m
2017-10-16T23:34:08.266Z,1508196848.266 [MissionManager](INFO): DefineOutput Science.PeakNO3Latitude = nan arcdeg
2017-10-16T23:34:08.268Z,1508196848.268 [MissionManager](INFO): DefineOutput Science.PeakNO3Longitude = nan arcdeg
2017-10-16T23:34:08.271Z,1508196848.271 [MissionManager](INFO): DefineOutput Science.PatchChl = 0.000000 m
2017-10-16T23:34:08.274Z,1508196848.274 [MissionManager](INFO): DefineOutput Science.PatchChlDepth = 0.000000 m
2017-10-16T23:34:08.304Z,1508196848.304 [MissionManager](INFO): DefineOutput Science.PatchChlLatitude = nan arcdeg
2017-10-16T23:34:08.307Z,1508196848.307 [MissionManager](INFO): DefineOutput Science.PatchChlLongitude = nan arcdeg
2017-10-16T23:34:08.310Z,1508196848.310 [MissionManager](INFO): DefineOutput Science.PatchChlDistance = nan arcdeg
2017-10-16T23:34:08.353Z,1508196848.353 [MissionManager](CRITICAL): Unable to find MissionComponent with name PeakDetectVsDepth at Science:PeakDetectChl:A
2017-10-16T23:34:08.353Z,1508196848.353 [Science:PeakDetectChl](CRITICAL): Error!!!! no component for child behavior.
2017-10-16T23:34:08.364Z,1508196848.364 [MissionManager](CRITICAL): Unable to find MissionComponent with name PeakDetectHorizontal at Science:HighestChlPeakReport:A
2017-10-16T23:34:08.364Z,1508196848.364 [Science:HighestChlPeakReport](CRITICAL): Error!!!! no component for child behavior.
2017-10-16T23:34:08.366Z,1508196848.366 [MissionManager](CRITICAL): Unable to find MissionComponent with name PeakDetectVsDepth at Science:PeakDetectNO3:A
2017-10-16T23:34:08.366Z,1508196848.366 [Science:PeakDetectNO3](CRITICAL): Error!!!! no component for child behavior.
2017-10-16T23:34:08.390Z,1508196848.390 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Aggregate xmlns="Tethys"
       xmlns:Derivation="Tethys/Derivation"
       xmlns:Science="Tethys/Science"
       xmlns:Sensor="Tethys/Sensor"
       xmlns:Trigger="Tethys/Trigger"
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Derivation http://okeanids.mbari.org/tethys/Xml/Derivation.xsd
                           Tethys/Science http://okeanids.mbari.org/tethys/Xml/Science.xsd
                           Tethys/Sensor http://okeanids.mbari.org/tethys/Xml/Sensor.xsd
                           Tethys/Trigger http://okeanids.mbari.org/tethys/Xml/Trigger.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Science">

    <DefineArg Name="SampleISUS"><Description>
        Set either this or PeakDetectNO3Active to True in order to sample
        Nitrate. EnabledISUS must also be true.
    </Description><False/></DefineArg>

    <DefineArg Name="SampleISUSmaxPitch"><Description>
        Maximum pitch to sample ISUS. (EnabledISUS must also be true.)
    </Description><Units:degree/><Value>60.0</Value></DefineArg>

    <DefineArg Name="SampleISUSminPitch"><Description>
        Minimum pitch to sample ISUS. (EnabledISUS must also be true.)
    </Description><Units:degree/><Value>-60.0</Value></DefineArg>

    <DefineArg Name="PeakDetectChlActive"><Description>
        Turns on peak detection of Cholorphyll.
    </Description><False/></DefineArg>

    <DefineArg Name="HighestChlPeakReportActive"><Description>
        Turns on reporting of the highest peak value on yo-yo profiles in a
        horizontal sliding window (of length numProfilesSlidingwindow)
    </Description><False/></DefineArg>

    <DefineArg Name="PatchTracking"><Description>
        If tracking a patch
    </Description><False/></DefineArg>

    <DefineArg Name="FilterWidthHorizontal"><Description>
        Width of boxcar filter applied to yoyo-wise chl peaks to pick out the
        highest peak.
    </Description><Units:count/><Value>3</Value></DefineArg>

    <DefineArg Name="NumProfilesSlidingwindow"><Description>
        Length of horizontal sliding window. The highest yoyo-wise chl peak
        (after low-pass filtering by a filter of length FilterWidthHorizontal)
        within this window.
    </Description><Units:count/><Value>100</Value></DefineArg>

    <DefineArg Name="PeakDetectNO3Active"><Description>
        Turns on peak detection of Nitrate (and turns on ISUS).
    </Description><False/></DefineArg>

    <DefineArg Name="UpwardDerivativeOfTemperatureActive"><Description>
        Turns on seawater temperature derivative.
    </Description><False/></DefineArg>

    <DefineArg Name="EnabledAanderaaO2"><Description>
        Automatically set to True if the Aanderaa O2 sensor is installed. Set to
        false to disable reading Aandera O2.
    </Description><Science:Aanderaa_O2.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledNeilBrown"><Description>
        Automatically set to true if the Neil Brown CTD is enabled. Set to false
        to disable reading from the Neil Brown.
    </Description><Science:CTD_NeilBrown.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledSeabird"><Description>
        Automatically set to true if the CTD is enabled. Set to false to disable
        reading from the CTD.
    </Description><Science:CTD_Seabird.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledTurbulence_NPS"><Description>
        Automatically set to true if the NPS Turbulence sensor is enabled. Set
        to false to disable reading from the NPS Turbulence sensor.
    </Description><Science:Turbulence_NPS.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsBB2FL"><Description>
        Automatically set to true if the the WetLabs BB2FL is enabled. Set to
        false to disable the WetLabs BB2FL.
    </Description><Science:WetLabsBB2FL.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledISUS"><Description>
        Automatically set to True if ISUS is enabled. Set to false to disable
        ISUS.
    </Description><Science:ISUS.loadAtStartup/></DefineArg>

<!--
    <DefineArg Name="EnabledSeeStar"><Description>
        Automatically set to True if SeeStar/SCPI is enabled. Set false to
        override.
    </Description><Sensor:SCPI.loadAtStartup/></DefineArg>

    <DefineArg Name="SeeStarTimeout"><Description>
        Timeout to trigger/read trigger for SeeStar camera.
    </Description><Sensor:SCPI.sampleTime/></DefineArg>

    <DefineArg Name="SeeStarTriggerDepth"><Description>
        Trigger the camera above this depth.
    </Description><Units:meter/><Value>40.0</Value></DefineArg>
-->

    <DefineArg Name="LowPassWindowLength"><Description>
        Low-pass window length (based on depth sensor sampling interval 0.4
        second) for low-pass filtering.
    </Description><Units:count/><Value>20</Value></DefineArg>

    <DefineArg Name="PeakChlShallowBound"><Description>
        Shallow depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakChlDeepBound"><Description>
        Deep depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineOutput Name="PeakChl"><Units:microgram_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3"><Units:micromole_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Depth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Latitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Longitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChl"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlDistance"><Units:degree/><Value>NaN</Value></DefineOutput>

    <Parallel/>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledAanderaaO2"/>
        </While>
        <Universal:mass_concentration_of_oxygen_in_sea_water/>
    </ReadData>

    <ReadData>
        <While>
            <Arg Name="EnabledISUS"/>
            <And><Universal:platform_pitch_angle/><Lt><Arg Name="SampleISUSmaxPitch"/></Lt><And><Universal:platform_pitch_angle/><Gt><Arg Name="SampleISUSminPitch"/></Gt><And><Arg Name="SampleISUS"/><Or><Arg Name="PeakDetectNO3Active"/></Or></And></And></And>
        </While>
        <Universal:mole_concentration_of_nitrate_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
        </While>
        <Universal:sea_water_temperature/>
        <Universal:sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
            <And><Arg Name="UpwardDerivativeOfTemperatureActive"/></And>
        </While>
        <Universal:upward_derivative_of_sea_water_temperature/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledTurbulence_NPS"/>
        </While>
        <Science:Turbulence_NPS.MicroCond/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsBB2FL"/>
            <Or><Arg Name="PeakDetectChlActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <Aggregate  Id="PeakDetectChl">

        <While>
            <Arg Name="PeakDetectChlActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_chlorophyll_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakChlShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakChlDeepBound"/></Setting>
            <OutputArg Name="PeakChl"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakChlDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakChlLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakChlLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakChl"/><Arg Name="PeakChlDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="HighestChlPeakReport">

        <While>
            <Arg Name="HighestChlPeakReportActive"/>
        </While>

        <Trigger:PeakDetectHorizontal>
            <Sequence/>
            <Setting><Trigger:PeakDetectHorizontal.detectFrom/><Arg Name="PeakChl"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.depthFrom/><Arg Name="PeakChlDepth"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.latitudeFrom/><Arg Name="PeakChlLatitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.longitudeFrom/><Arg Name="PeakChlLongitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.patchTracking/><Arg Name="PatchTracking"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.filterWidth/><Arg Name="FilterWidthHorizontal"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.numProfilesSlidingwindow/><Arg Name="NumProfilesSlidingwindow"/></Setting>
            <OutputArg Name="PatchChl"><Trigger:PeakDetectHorizontal.peakDetect/></OutputArg>
            <OutputArg Name="PatchChlDepth"><Trigger:PeakDetectHorizontal.peakDepth/></OutputArg>
            <OutputArg Name="PatchChlLatitude"><Trigger:PeakDetectHorizontal.peakLatitude/></OutputArg>
            <OutputArg Name="PatchChlLongitude"><Trigger:PeakDetectHorizontal.peakLongitude/></OutputArg>
            <OutputArg Name="PatchChlDistance"><Trigger:PeakDetectHorizontal.peakDistance/></OutputArg>
        </Trigger:PeakDetectHorizontal>

    </Aggregate>

    <Aggregate Id="PeakDetectNO3">

        <While>
            <Arg Name="PeakDetectNO3Active"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mole_concentration_of_nitrate_in_sea_water/></Setting>
            <OutputArg Name="PeakNO3"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakNO3Depth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakNO3Latitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakNO3Longitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakNO3"/><Arg Name="PeakNO3Depth"/>
        </SendData>

    </Aggregate>

<!--
    <Aggregate Id="RollSeeStar">

        <Description>
            Turn on the SeeStar/SCPI camera.
        </Description>

        <When>
            <Arg Name="EnabledSeeStar"/>
            <And><Universal:depth/><Lt><Arg Name="SeeStarTriggerDepth"/></Lt></And>
        </When>

        <ReadDatum Id="TriggerSeeStar">
            <Timeout Duration="SeeStarTimeout"/>
            <Sensor:SCPI.sampleSCPI/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Arg Name="SeeStarTimeout"/></Setting>
        </Guidance:Wait>

    </Aggregate>
-->

</Aggregate>


2017-10-16T23:34:08.459Z,1508196848.459 [Default] Stopped
2017-10-16T23:34:08.459Z,1508196848.459 [Default](DEBUG): Aggregate::uninitialize Default
2017-10-16T23:34:08.459Z,1508196848.459 [Default:CheckIn] Stopped
2017-10-16T23:34:08.459Z,1508196848.459 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2017-10-16T23:34:08.459Z,1508196848.459 [Default:CheckIn:Read_GPS] Stopped
2017-10-16T23:34:08.459Z,1508196848.459 [MissionManager](IMPORTANT): Started mission Science
2017-10-16T23:34:08.459Z,1508196848.459 [Science] Running Loop=1
2017-10-16T23:34:08.459Z,1508196848.459 [Science](DEBUG): Aggregate::initialize Science
2017-10-16T23:34:08.460Z,1508196848.460 [Science:A] Running Loop=1
2017-10-16T23:34:08.460Z,1508196848.460 [Science:B] Running Loop=1
2017-10-16T23:34:08.460Z,1508196848.460 [Science:C] Running Loop=1
2017-10-16T23:34:08.460Z,1508196848.460 [Science:D] Running Loop=1
2017-10-16T23:34:08.460Z,1508196848.460 [Science:E] Running Loop=1
2017-10-16T23:34:08.460Z,1508196848.460 [Science:F] Running Loop=1
2017-10-16T23:34:08.460Z,1508196848.460 [Science:PeakDetectChl] Running Loop=1
2017-10-16T23:34:08.460Z,1508196848.460 [Science:PeakDetectChl](DEBUG): Aggregate::initialize Science:PeakDetectChl
2017-10-16T23:34:08.460Z,1508196848.460 [Science:PeakDetectChl:A] Running Loop=1
2017-10-16T23:34:08.460Z,1508196848.460 [Science:HighestChlPeakReport] Running Loop=1
2017-10-16T23:34:08.460Z,1508196848.460 [Science:HighestChlPeakReport](DEBUG): Aggregate::initialize Science:HighestChlPeakReport
2017-10-16T23:34:08.460Z,1508196848.460 [Science:PeakDetectNO3] Running Loop=1
2017-10-16T23:34:08.461Z,1508196848.461 [Science:PeakDetectNO3](DEBUG): Aggregate::initialize Science:PeakDetectNO3
2017-10-16T23:34:08.461Z,1508196848.461 [Science:PeakDetectNO3:A] Running Loop=1
2017-10-16T23:34:08.461Z,1508196848.461 [Science:PeakDetectNO3] Stopped
2017-10-16T23:34:08.461Z,1508196848.461 [Science:PeakDetectNO3](DEBUG): Aggregate::uninitialize Science:PeakDetectNO3
2017-10-16T23:34:08.461Z,1508196848.461 [Science:PeakDetectNO3:A] Stopped
2017-10-16T23:34:08.461Z,1508196848.461 [Science:HighestChlPeakReport] Stopped
2017-10-16T23:34:08.461Z,1508196848.461 [Science:HighestChlPeakReport](DEBUG): Aggregate::uninitialize Science:HighestChlPeakReport
2017-10-16T23:34:08.462Z,1508196848.462 [Science:PeakDetectChl] Stopped
2017-10-16T23:34:08.462Z,1508196848.462 [Science:PeakDetectChl](DEBUG): Aggregate::uninitialize Science:PeakDetectChl
2017-10-16T23:34:08.462Z,1508196848.462 [Science:PeakDetectChl:A] Stopped
2017-10-16T23:34:08.462Z,1508196848.462 [Science:F] Running Loop=1
2017-10-16T23:34:08.462Z,1508196848.462 [Science:F](CRITICAL): Unable to read non-existent data element: mass_concentration_of_chlorophyll_in_sea_water
2017-10-16T23:34:08.464Z,1508196848.464 [Science:E] Stopped
2017-10-16T23:34:08.464Z,1508196848.464 [Science:D] Stopped
2017-10-16T23:34:08.464Z,1508196848.464 [Science:C] Running Loop=1
2017-10-16T23:34:08.464Z,1508196848.464 [Science:C](CRITICAL): Unable to read non-existent data element: sea_water_temperature
2017-10-16T23:34:08.464Z,1508196848.464 [Science:C](CRITICAL): Unable to read non-existent data element: sea_water_salinity
2017-10-16T23:34:08.466Z,1508196848.466 [Science:B] Stopped
2017-10-16T23:34:08.466Z,1508196848.466 [Science:A] Running Loop=1
2017-10-16T23:34:08.466Z,1508196848.466 [Science:A](CRITICAL): Unable to read non-existent data element: mass_concentration_of_oxygen_in_sea_water
2017-10-16T23:34:08.469Z,1508196848.469 [CBIT](INFO): Critical error at 20171016T233408
2017-10-16T23:34:08.470Z,1508196848.470 [Supervisor](INFO): Stop Mission called by CBIT::checkCriticals
2017-10-16T23:34:08.518Z,1508196848.518 [CommandLine](IMPORTANT): Running ./Missions/Insert/Science.xml
2017-10-16T23:34:08.859Z,1508196848.859 [Science:F](CRITICAL): Unable to read non-existent data element: mass_concentration_of_chlorophyll_in_sea_water
2017-10-16T23:34:08.860Z,1508196848.860 [Science:C](CRITICAL): Unable to read non-existent data element: sea_water_temperature
2017-10-16T23:34:08.860Z,1508196848.860 [Science:C](CRITICAL): Unable to read non-existent data element: sea_water_salinity
2017-10-16T23:34:08.860Z,1508196848.860 [Science:A](CRITICAL): Unable to read non-existent data element: mass_concentration_of_oxygen_in_sea_water
2017-10-16T23:34:08.861Z,1508196848.861 [MissionManager](INFO): MissionManager is completed.
2017-10-16T23:34:08.861Z,1508196848.861 [MissionManager](INFO): Uninitializing Mission Science
2017-10-16T23:34:08.861Z,1508196848.861 [Science] Stopped
2017-10-16T23:34:08.861Z,1508196848.861 [Science](DEBUG): Aggregate::uninitialize Science
2017-10-16T23:34:08.861Z,1508196848.861 [Science:A] Stopped
2017-10-16T23:34:08.861Z,1508196848.861 [Science:C] Stopped
2017-10-16T23:34:08.861Z,1508196848.861 [Science:F] Stopped
2017-10-16T23:34:08.868Z,1508196848.868 [CBIT](INFO): Critical error at 20171016T233408
2017-10-16T23:34:09.259Z,1508196849.259 [MissionManager](IMPORTANT): Started mission Default
2017-10-16T23:34:09.259Z,1508196849.259 [Default] Running Loop=1
2017-10-16T23:34:09.259Z,1508196849.259 [Default](DEBUG): Aggregate::initialize Default
2017-10-16T23:34:09.259Z,1508196849.259 [Default:CheckIn] Running Loop=1
2017-10-16T23:34:09.259Z,1508196849.259 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2017-10-16T23:34:09.259Z,1508196849.259 [Default:CheckIn:Read_GPS] Running Loop=1
2017-10-16T23:34:21.048Z,1508196861.048 [CommandLine](IMPORTANT): got command quit
2017-10-16T23:34:22.066Z,1508196862.066 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2017-10-16T23:34:22.066Z,1508196862.066 [CommandLine ThreadHandler](INFO): Thread cancelled.
2017-10-16T23:34:22.067Z,1508196862.067 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2017-10-16T23:34:22.068Z,1508196862.068 [CommandLine ThreadHandler](INFO): Thread cancelled.
2017-10-16T23:34:22.068Z,1508196862.068 [CommandLine](INFO): Join timeout helper Thread ID is 2738
2017-10-16T23:34:22.079Z,1508196862.079 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2017-10-16T23:34:22.079Z,1508196862.079 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2017-10-16T23:34:22.080Z,1508196862.080 [NavChartDb](INFO): Join timeout helper Thread ID is 2739
2017-10-16T23:34:22.112Z,1508196862.112 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2017-10-16T23:34:22.112Z,1508196862.112 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2017-10-16T23:34:22.131Z,1508196862.131 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2017-10-16T23:34:22.132Z,1508196862.132 [logger ThreadHandler](INFO): Thread cancelled.
2017-10-16T23:34:22.132Z,1508196862.132 [logger](INFO): Join timeout helper Thread ID is 2740
2017-10-16T23:34:22.168Z,1508196862.168 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2017-10-16T23:34:22.168Z,1508196862.168 [logger ThreadHandler](INFO): Thread cancelled.
2017-10-16T23:34:22.171Z,1508196862.171 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2017-10-16T23:34:22.172Z,1508196862.172 [CommandLine ThreadHandler](INFO): Thread cancelled.
2017-10-16T23:34:22.172Z,1508196862.172 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2017-10-16T23:34:22.172Z,1508196862.172 [controlThread ThreadHandler](INFO): Thread cancelled.
2017-10-16T23:34:22.172Z,1508196862.172 [controlThread](INFO): Join timeout helper Thread ID is 2741
2017-10-16T23:34:22.456Z,1508196862.456 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2017-10-16T23:34:22.456Z,1508196862.456 [controlThread](DEBUG): Uninitializing ControlThread
2017-10-16T23:34:22.456Z,1508196862.456 [MissionManager](INFO): Uninitializing Mission Default
2017-10-16T23:34:22.456Z,1508196862.456 [Default] Stopped
2017-10-16T23:34:22.456Z,1508196862.456 [Default](DEBUG): Aggregate::uninitialize Default
2017-10-16T23:34:22.457Z,1508196862.457 [Default:CheckIn] Stopped
2017-10-16T23:34:22.457Z,1508196862.457 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2017-10-16T23:34:22.457Z,1508196862.457 [Default:CheckIn:Read_GPS] Stopped
2017-10-16T23:34:22.458Z,1508196862.458 [SBIT](DEBUG): Uninitialize SBIT Component.
2017-10-16T23:34:22.458Z,1508196862.458 [IBIT](DEBUG): Uninitialize IBIT Component.
2017-10-16T23:34:22.459Z,1508196862.459 [CBIT](DEBUG): Uninitialize CBIT Component.
2017-10-16T23:34:22.459Z,1508196862.459 [controlThread ThreadHandler](INFO): Thread cancelled.
2017-10-16T23:34:22.480Z,1508196862.480 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2017-10-16T23:34:22.522Z,1508196862.522 [logger ThreadHandler](INFO): Thread cancelled.