INFO 2020-11-12 15:36:54,496Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180828_20180903/20180903T131817/201809031318_201809031853.nc4 file... INFO 2020-11-12 15:36:54,496Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201809031318_201809031853.nc4 INFO 2020-11-12 15:36:55,598Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180828_20180903/20180903T131817/201809031318_201809031853.nc4 INFO 2020-11-12 15:36:55,630Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:36:56,265Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:36:56,894Z lrauvNc4ToNetcdf.py createSeries():241 depth : 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:36:57,523Z lrauvNc4ToNetcdf.py createSeries():241 time : 27 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:36:58,164Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:36:58,785Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:36:59,438Z lrauvNc4ToNetcdf.py createSeries():241 depth : 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:00,102Z lrauvNc4ToNetcdf.py createSeries():241 time : 27 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:00,743Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:01,364Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:01,989Z lrauvNc4ToNetcdf.py createSeries():241 depth : 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:02,640Z lrauvNc4ToNetcdf.py createSeries():241 time : 27 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:03,274Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:03,918Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:04,593Z lrauvNc4ToNetcdf.py createSeries():241 depth : 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:05,241Z lrauvNc4ToNetcdf.py createSeries():241 time : 27 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:05,865Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes INFO 2020-11-12 15:37:06,159Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2020-11-12 15:37:06,456Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity INFO 2020-11-12 15:37:06,749Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature INFO 2020-11-12 15:37:06,815Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to salinity INFO 2020-11-12 15:37:06,880Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to temperature INFO 2020-11-12 15:37:06,886Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water: 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:07,528Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2020-11-12 15:37:08,112Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-11-12 15:37:08,701Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl INFO 2020-11-12 15:37:09,286Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2020-11-12 15:37:09,881Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2020-11-12 15:37:09,949Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-11-12 15:37:10,017Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-11-12 15:37:10,043Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2020-11-12 15:37:10,059Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage INFO 2020-11-12 15:37:10,061Z lrauvNc4ToNetcdf.py createSeries():241 time_fix : 1 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:10,068Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2020-11-12 15:37:10,070Z lrauvNc4ToNetcdf.py createSeries():241 latitude_fix: 1 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:10,078Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2020-11-12 15:37:10,080Z lrauvNc4ToNetcdf.py createSeries():241 longitude_fix: 1 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:10,087Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2020-11-12 15:37:10,134Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2020-11-12 15:37:10,283Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2020-11-12 15:37:10,295Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2020-11-12 15:37:10,707Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2020-11-12 15:37:11,338Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2020-11-12 15:37:11,345Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator INFO 2020-11-12 15:37:11,349Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:11,933Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator INFO 2020-11-12 15:37:11,938Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:12,534Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator INFO 2020-11-12 15:37:12,539Z lrauvNc4ToNetcdf.py createSeries():241 depth : 26 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:13,163Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator INFO 2020-11-12 15:37:13,226Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle: 22 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:13,869Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-11-12 15:37:13,914Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle: 22 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:14,553Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-11-12 15:37:14,588Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation: 22 v_t values found before 2018-09-03 13:18:00 and after 2018-09-03 18:53:00 INFO 2020-11-12 15:37:15,202Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-11-12 15:37:15,203Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180828_20180903/20180903T131817/201809031318_201809031853.nc4 INFO 2020-11-12 15:37:16,545Z lrauvNc4ToNetcdf.py nudge_coords():674 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2020-11-12 15:37:16,547Z lrauvNc4ToNetcdf.py nudge_coords():691 - - - 0 0.00 - - - INFO 2020-11-12 15:37:16,548Z lrauvNc4ToNetcdf.py nudge_coords():724 0: 0.325 0.0003122 0.0003813 1538 11.58 -3.68 6.10 2018-09-03 13:35:45.009027958 INFO 2020-11-12 15:37:16,554Z lrauvNc4ToNetcdf.py nudge_coords():724 1: 0.348 0.0000013 0.0000037 6 0.12 -3.56 5.90 2018-09-03 13:35:52.337872028 INFO 2020-11-12 15:37:16,558Z lrauvNc4ToNetcdf.py nudge_coords():724 2: 0.345 0.0000047 0.0000005 7 0.08 -0.69 1.14 2018-09-03 13:35:57.608473063 INFO 2020-11-12 15:37:16,562Z lrauvNc4ToNetcdf.py nudge_coords():724 3: 0.347 0.0000042 0.0000010 6 0.10 -1.12 1.85 2018-09-03 13:36:04.007445097 INFO 2020-11-12 15:37:16,567Z lrauvNc4ToNetcdf.py nudge_coords():724 4: 0.332 0.0000005 0.0000000 6 0.07 -0.00 0.00 2018-09-03 13:36:08.833391905 INFO 2020-11-12 15:37:16,571Z lrauvNc4ToNetcdf.py nudge_coords():724 5: 3.101 -0.0000008 0.0000040 6 0.05 -8.21 13.60 2018-09-03 13:36:12.488070011 INFO 2020-11-12 15:37:16,576Z lrauvNc4ToNetcdf.py nudge_coords():724 6: 3.035 0.0000075 -0.0000005 6 0.03 1.83 -3.02 2018-09-03 13:36:17.477417946 INFO 2020-11-12 15:37:16,580Z lrauvNc4ToNetcdf.py nudge_coords():724 7: 0.308 0.0000018 0.0000028 7 0.06 -5.48 9.07 2018-09-03 13:36:24.020082951 INFO 2020-11-12 15:37:16,585Z lrauvNc4ToNetcdf.py nudge_coords():724 8: 3.021 -0.0000027 0.0000062 8 0.09 -7.84 12.99 2018-09-03 13:36:29.643642902 INFO 2020-11-12 15:37:16,589Z lrauvNc4ToNetcdf.py nudge_coords():724 9: 1.687 0.0000050 0.0000000 6 0.06 -0.00 0.00 2018-09-03 13:36:36.027509928 INFO 2020-11-12 15:37:16,594Z lrauvNc4ToNetcdf.py nudge_coords():724 10: 1.783 0.0000085 0.0000063 5 0.16 -4.35 7.21 2018-09-03 13:36:47.541363001 INFO 2020-11-12 15:37:16,598Z lrauvNc4ToNetcdf.py nudge_coords():724 11: 1.786 0.0000027 0.0000040 5 0.16 -2.77 4.58 2018-09-03 13:36:59.065180063 INFO 2020-11-12 15:37:16,603Z lrauvNc4ToNetcdf.py nudge_coords():724 12: 1.693 0.0000107 0.0000030 5 0.16 -2.04 3.38 2018-09-03 13:37:10.748671055 INFO 2020-11-12 15:37:16,607Z lrauvNc4ToNetcdf.py nudge_coords():724 13: 1.776 0.0000047 0.0000085 5 0.22 -4.38 7.26 2018-09-03 13:37:25.519973040 INFO 2020-11-12 15:37:16,612Z lrauvNc4ToNetcdf.py nudge_coords():724 14: 4.577 0.0000080 0.0000022 5 0.12 -2.05 3.40 2018-09-03 13:37:34.439219952 INFO 2020-11-12 15:37:16,616Z lrauvNc4ToNetcdf.py nudge_coords():724 15: 0.352 0.0003488 0.0005125 2547 18.02 -3.18 5.27 2018-09-03 13:55:40.061199903 INFO 2020-11-12 15:37:16,621Z lrauvNc4ToNetcdf.py nudge_coords():724 16: 0.321 0.0006332 0.0002755 1060 7.67 -4.01 6.65 2018-09-03 14:03:20.964471102 INFO 2020-11-12 15:37:16,626Z lrauvNc4ToNetcdf.py nudge_coords():724 17: 0.337 0.0002768 0.0002210 813 6.29 -3.92 6.51 2018-09-03 14:09:38.732428074 INFO 2020-11-12 15:37:16,631Z lrauvNc4ToNetcdf.py nudge_coords():724 18: 0.342 0.0003182 0.0003458 1320 9.57 -4.03 6.69 2018-09-03 14:19:13.511363982 INFO 2020-11-12 15:37:16,636Z lrauvNc4ToNetcdf.py nudge_coords():724 19: 0.355 0.0001000 0.0001795 642 5.18 -3.87 6.42 2018-09-03 14:24:24.847254992 INFO 2020-11-12 15:37:16,640Z lrauvNc4ToNetcdf.py nudge_coords():724 20: 0.328 0.0016416 -0.0005153 6872 46.23 1.23 -2.07 2018-09-03 15:10:39.333096027 INFO 2020-11-12 15:37:16,646Z lrauvNc4ToNetcdf.py nudge_coords():724 21: 0.346 0.0003893 -0.0007242 477 4.10 19.45 -32.75 2018-09-03 15:14:45.598439932 INFO 2020-11-12 15:37:16,650Z lrauvNc4ToNetcdf.py nudge_coords():724 22: 0.317 0.0011351 -0.0010115 6850 46.07 2.38 -4.07 2018-09-03 16:00:50.176114082 INFO 2020-11-12 15:37:16,656Z lrauvNc4ToNetcdf.py nudge_coords():724 23: 0.325 -0.0000167 0.0000390 33 0.52 -8.10 13.84 2018-09-03 16:01:21.884876013 INFO 2020-11-12 15:37:16,660Z lrauvNc4ToNetcdf.py nudge_coords():724 24: 0.327 0.0063595 -0.0034168 6651 46.62 7.86 -13.58 2018-09-03 16:47:59.221786976 INFO 2020-11-12 15:37:16,666Z lrauvNc4ToNetcdf.py nudge_coords():724 25: 0.348 0.0002150 0.0003365 408 3.20 -11.28 19.51 2018-09-03 16:51:11.333513021 INFO 2020-11-12 15:37:16,670Z lrauvNc4ToNetcdf.py nudge_coords():724 26: 0.343 0.0008717 -0.0028353 7021 47.30 6.35 -11.11 2018-09-03 17:38:29.656841993 INFO 2020-11-12 15:37:16,675Z lrauvNc4ToNetcdf.py nudge_coords():724 27: 0.347 0.0001027 0.0000155 222 2.14 -0.77 1.34 2018-09-03 17:40:38.450371981 INFO 2020-11-12 15:37:16,680Z lrauvNc4ToNetcdf.py nudge_coords():724 28: 0.348 -0.0001296 -0.0002947 783 5.73 5.44 -9.53 2018-09-03 17:46:22.656039953 INFO 2020-11-12 15:37:16,687Z lrauvNc4ToNetcdf.py nudge_coords():724 29: 0.332 0.0001997 -0.0000052 247 2.16 0.25 -0.44 2018-09-03 17:48:32.781259060 INFO 2020-11-12 15:37:16,692Z lrauvNc4ToNetcdf.py nudge_coords():724 30: 0.365 0.0018688 -0.0014854 2482 17.40 8.99 -15.82 2018-09-03 18:05:57.316575050 INFO 2020-11-12 15:37:16,697Z lrauvNc4ToNetcdf.py nudge_coords():724 31: 0.321 -0.0000152 -0.0000133 28 0.47 2.98 -5.25 2018-09-03 18:06:26.011990070 INFO 2020-11-12 15:37:16,701Z lrauvNc4ToNetcdf.py nudge_coords():724 32: 0.347 0.0022320 -0.0015181 2298 15.94 10.00 -17.65 2018-09-03 18:22:22.615351915 INFO 2020-11-12 15:37:16,706Z lrauvNc4ToNetcdf.py nudge_coords():724 33: 0.284 0.0004880 -0.0000060 43 0.63 1.00 -1.77 2018-09-03 18:23:00.744273901 INFO 2020-11-12 15:37:16,711Z lrauvNc4ToNetcdf.py nudge_coords():724 34: 0.349 0.0011125 -0.0009319 1192 8.38 11.67 -20.61 2018-09-03 18:31:23.713305950 INFO 2020-11-12 15:37:16,716Z lrauvNc4ToNetcdf.py nudge_coords():724 35: 0.354 0.0000500 0.0000877 944 6.98 -1.32 2.33 2018-09-03 18:38:23.075227976 INFO 2020-11-12 15:37:16,720Z lrauvNc4ToNetcdf.py nudge_coords():724 36: 0.350 0.0003475 -0.0004600 1162 8.30 5.82 -10.27 2018-09-03 18:46:41.372209072 INFO 2020-11-12 15:37:16,725Z lrauvNc4ToNetcdf.py nudge_coords():724 37: 0.341 0.0016872 0.0008687 900 6.40 -14.22 25.14 2018-09-03 18:53:05.960393906 INFO 2020-11-12 15:37:16,730Z lrauvNc4ToNetcdf.py nudge_coords():754 39: - - - 11 0.18 - - INFO 2020-11-12 15:37:16,730Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 46627 INFO 2020-11-12 15:37:16,758Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180903T121829/20180903T195317/data.csv INFO 2020-11-12 15:37:16,813Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database INFO 2020-11-12 15:37:16,817Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2020-11-12 15:37:17,572Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180828_20180903/20180903T131817/201809031318_201809031853_2S_scieng.nc