2018-12-18T16:53:44.704Z,1545152024.704 [Supervisor](DEBUG): Initializing supervisor.
2018-12-18T16:53:44.707Z,1545152024.707 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-12-18T16:53:44.707Z,1545152024.707 [SyncHandler](INFO): Protected caller Thread ID is 8875
2018-12-18T16:53:44.708Z,1545152024.708 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-12-18T16:53:44.709Z,1545152024.709 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-12-18T16:53:44.709Z,1545152024.709 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 8876
2018-12-18T16:53:44.712Z,1545152024.712 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-12-18T16:53:44.724Z,1545152024.724 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-12-18T16:53:44.725Z,1545152024.725 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-12-18T16:53:44.726Z,1545152024.726 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 8877
2018-12-18T16:53:44.727Z,1545152024.727 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-12-18T16:53:44.728Z,1545152024.728 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-12-18T16:53:44.728Z,1545152024.728 [logger ThreadHandler](INFO): Protected caller Thread ID is 8878
2018-12-18T16:53:44.730Z,1545152024.730 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-12-18T16:53:44.730Z,1545152024.730 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-12-18T16:53:44.732Z,1545152024.732 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-12-18T16:53:45.064Z,1545152025.064 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-12-18T16:53:45.065Z,1545152025.065 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-12-18T16:53:45.267Z,1545152025.267 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-12-18T16:53:45.268Z,1545152025.268 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-12-18T16:53:45.571Z,1545152025.571 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-12-18T16:53:45.572Z,1545152025.572 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-12-18T16:53:45.718Z,1545152025.718 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-12-18T16:53:45.719Z,1545152025.719 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-12-18T16:53:45.818Z,1545152025.818 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-12-18T16:53:45.819Z,1545152025.819 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-12-18T16:53:46.301Z,1545152026.301 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-12-18T16:53:46.302Z,1545152026.302 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-12-18T16:53:46.775Z,1545152026.775 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-12-18T16:53:46.776Z,1545152026.776 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-12-18T16:53:47.252Z,1545152027.252 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-12-18T16:53:47.252Z,1545152027.252 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-12-18T16:53:47.356Z,1545152027.356 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-12-18T16:53:47.357Z,1545152027.357 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-12-18T16:53:47.454Z,1545152027.454 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-12-18T16:53:47.454Z,1545152027.454 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-12-18T16:53:47.675Z,1545152027.675 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-12-18T16:53:47.675Z,1545152027.675 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-12-18T16:53:47.882Z,1545152027.882 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-12-18T16:53:47.883Z,1545152027.883 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-12-18T16:53:48.289Z,1545152028.289 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-12-18T16:53:48.290Z,1545152028.290 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-12-18T16:53:48.436Z,1545152028.436 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-12-18T16:53:48.437Z,1545152028.437 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-12-18T16:53:48.519Z,1545152028.519 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-daphne/
2018-12-18T16:53:48.520Z,1545152028.520 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Control.cfg
2018-12-18T16:53:48.625Z,1545152028.625 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/logger.cfg
2018-12-18T16:53:48.748Z,1545152028.748 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Servo.cfg
2018-12-18T16:53:48.844Z,1545152028.844 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Simulator.cfg
2018-12-18T16:53:48.930Z,1545152028.930 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Sensor.cfg
2018-12-18T16:53:49.101Z,1545152029.101 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/vehicle.cfg
2018-12-18T16:53:49.295Z,1545152029.295 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/workSite.cfg
2018-12-18T16:53:49.382Z,1545152029.382 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Battery.cfg
2018-12-18T16:53:49.972Z,1545152029.972 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2018-12-18T16:53:49.973Z,1545152029.973 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/secure.cfg
2018-12-18T16:53:50.120Z,1545152030.120 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Navigation.cfg
2018-12-18T16:53:50.213Z,1545152030.213 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/BIT.cfg
2018-12-18T16:53:50.376Z,1545152030.376 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Science.cfg
2018-12-18T16:53:50.600Z,1545152030.600 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2018-12-18T16:53:50.613Z,1545152030.613 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-12-18T16:53:50.855Z,1545152030.855 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-12-18T16:53:50.856Z,1545152030.856 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-12-18T16:53:50.899Z,1545152030.899 [DepthRateCalculator] Loaded
2018-12-18T16:53:50.899Z,1545152030.899 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-12-18T16:53:50.905Z,1545152030.905 [PitchRateCalculator] Loaded
2018-12-18T16:53:50.906Z,1545152030.906 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-12-18T16:53:50.922Z,1545152030.922 [SpeedCalculator] Loaded
2018-12-18T16:53:50.922Z,1545152030.922 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-12-18T16:53:50.944Z,1545152030.944 [TempGradientCalculator] Loaded
2018-12-18T16:53:50.944Z,1545152030.944 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-12-18T16:53:50.950Z,1545152030.950 [YawRateCalculator] Loaded
2018-12-18T16:53:50.950Z,1545152030.950 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-12-18T16:53:50.992Z,1545152030.992 [ElevatorOffsetCalculator] Loaded
2018-12-18T16:53:50.992Z,1545152030.992 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-12-18T16:53:50.992Z,1545152030.992 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-12-18T16:53:50.993Z,1545152030.993 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-12-18T16:53:51.057Z,1545152031.057 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-12-18T16:53:51.058Z,1545152031.058 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-12-18T16:53:51.160Z,1545152031.160 [BuoyancyServo] Loaded
2018-12-18T16:53:51.160Z,1545152031.160 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-12-18T16:53:51.175Z,1545152031.175 [ElevatorServo] Loaded
2018-12-18T16:53:51.176Z,1545152031.176 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-12-18T16:53:51.190Z,1545152031.190 [MassServo] Loaded
2018-12-18T16:53:51.191Z,1545152031.191 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-12-18T16:53:51.206Z,1545152031.206 [RudderServo] Loaded
2018-12-18T16:53:51.206Z,1545152031.206 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-12-18T16:53:51.221Z,1545152031.221 [ThrusterServo] Loaded
2018-12-18T16:53:51.221Z,1545152031.221 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-12-18T16:53:51.221Z,1545152031.221 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-12-18T16:53:51.222Z,1545152031.222 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-12-18T16:53:51.235Z,1545152031.235 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-12-18T16:53:51.236Z,1545152031.236 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-12-18T16:53:51.337Z,1545152031.337 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-12-18T16:53:51.338Z,1545152031.338 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-12-18T16:53:51.633Z,1545152031.633 [DataOverHttps] Loaded
2018-12-18T16:53:51.634Z,1545152031.634 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2018-12-18T16:53:51.647Z,1545152031.647 [Depth_Keller] Loaded
2018-12-18T16:53:51.648Z,1545152031.648 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2018-12-18T16:53:51.653Z,1545152031.653 [DropWeight] Loaded
2018-12-18T16:53:51.653Z,1545152031.653 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2018-12-18T16:53:51.754Z,1545152031.754 [NAL9602] Loaded
2018-12-18T16:53:51.754Z,1545152031.754 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2018-12-18T16:53:51.770Z,1545152031.770 [Onboard] Loaded
2018-12-18T16:53:51.771Z,1545152031.771 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2018-12-18T16:53:51.781Z,1545152031.781 [Radio_Surface] Loaded
2018-12-18T16:53:51.781Z,1545152031.781 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2018-12-18T16:53:51.783Z,1545152031.783 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 4088F4E0
2018-12-18T16:53:51.783Z,1545152031.783 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 8960
2018-12-18T16:53:51.830Z,1545152031.830 [PNI_TCM] Loaded
2018-12-18T16:53:51.831Z,1545152031.831 [ComponentRegistry](DEBUG): SyncComponent "PNI_TCM" handled in the control thread.
2018-12-18T16:53:51.831Z,1545152031.831 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2018-12-18T16:53:51.832Z,1545152031.832 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-12-18T16:53:51.968Z,1545152031.968 [SBIT](DEBUG): Construct Startup Built In Test.
2018-12-18T16:53:51.990Z,1545152031.990 [SBIT] Loaded
2018-12-18T16:53:51.991Z,1545152031.991 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-12-18T16:53:51.992Z,1545152031.992 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-12-18T16:53:52.004Z,1545152032.004 [IBIT] Loaded
2018-12-18T16:53:52.004Z,1545152032.004 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-12-18T16:53:52.007Z,1545152032.007 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-12-18T16:53:52.399Z,1545152032.399 [CBIT] Loaded
2018-12-18T16:53:52.399Z,1545152032.399 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-12-18T16:53:52.400Z,1545152032.400 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-12-18T16:53:52.400Z,1545152032.400 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-12-18T16:53:52.647Z,1545152032.647 [CTD_NeilBrown] Loaded
2018-12-18T16:53:52.647Z,1545152032.647 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2018-12-18T16:53:52.648Z,1545152032.648 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4096F4E0
2018-12-18T16:53:52.648Z,1545152032.648 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 8961
2018-12-18T16:53:52.732Z,1545152032.732 [CTD_Seabird] Loaded
2018-12-18T16:53:52.732Z,1545152032.732 [ComponentRegistry](DEBUG): Component "CTD_Seabird" handled in its own thread.
2018-12-18T16:53:52.733Z,1545152032.733 [CTD_Seabird ThreadHandler](DEBUG): Created PCaller Thread at 4099F4E0
2018-12-18T16:53:52.733Z,1545152032.733 [CTD_Seabird ThreadHandler](INFO): Protected caller Thread ID is 8962
2018-12-18T16:53:52.748Z,1545152032.748 [PAR_Licor] Loaded
2018-12-18T16:53:52.748Z,1545152032.748 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-12-18T16:53:52.799Z,1545152032.799 [WetLabsBB2FL] Loaded
2018-12-18T16:53:52.799Z,1545152032.799 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-12-18T16:53:52.800Z,1545152032.800 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 409CF4E0
2018-12-18T16:53:52.800Z,1545152032.800 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 8963
2018-12-18T16:53:52.801Z,1545152032.801 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-12-18T16:53:52.802Z,1545152032.802 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-12-18T16:53:52.870Z,1545152032.870 [VerticalControl](DEBUG): Construct VerticalControl.
2018-12-18T16:53:52.955Z,1545152032.955 [VerticalControl] Loaded
2018-12-18T16:53:52.955Z,1545152032.955 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-12-18T16:53:52.956Z,1545152032.956 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-12-18T16:53:53.014Z,1545152033.014 [HorizontalControl] Loaded
2018-12-18T16:53:53.014Z,1545152033.014 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-12-18T16:53:53.015Z,1545152033.015 [SpeedControl](DEBUG): Construct SpeedControl.
2018-12-18T16:53:53.016Z,1545152033.016 [SpeedControl] Loaded
2018-12-18T16:53:53.017Z,1545152033.017 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-12-18T16:53:53.017Z,1545152033.017 [LoopControl](DEBUG): Construct LoopControl.
2018-12-18T16:53:53.018Z,1545152033.018 [LoopControl] Loaded
2018-12-18T16:53:53.018Z,1545152033.018 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-12-18T16:53:53.019Z,1545152033.019 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-12-18T16:53:53.019Z,1545152033.019 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-12-18T16:53:53.046Z,1545152033.046 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-12-18T16:53:53.047Z,1545152033.047 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-12-18T16:53:53.144Z,1545152033.144 [DeadReckonUsingSpeedCalculator] Loaded
2018-12-18T16:53:53.145Z,1545152033.145 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-12-18T16:53:53.163Z,1545152033.163 [NavChart] Loaded
2018-12-18T16:53:53.163Z,1545152033.163 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-12-18T16:53:53.167Z,1545152033.167 [UniversalFixResidualReporter] Loaded
2018-12-18T16:53:53.168Z,1545152033.168 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-12-18T16:53:53.168Z,1545152033.168 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-12-18T16:53:53.172Z,1545152033.172 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-12-18T16:53:53.173Z,1545152033.173 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-12-18T16:53:53.179Z,1545152033.179 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-12-18T16:53:53.180Z,1545152033.180 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 40A684E0
2018-12-18T16:53:53.181Z,1545152033.181 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 8964
2018-12-18T16:53:53.186Z,1545152033.186 [Supervisor](INFO): Main Thread ID is 8874
2018-12-18T16:53:53.186Z,1545152033.186 [Supervisor](DEBUG): Running supervisor.
2018-12-18T16:53:53.186Z,1545152033.186 [CommandLine ThreadHandler](INFO): Handler Thread ID is 8965
2018-12-18T16:53:53.189Z,1545152033.189 [controlThread ThreadHandler](INFO): Handler Thread ID is 8966
2018-12-18T16:53:53.189Z,1545152033.189 [controlThread](DEBUG): Initializing ControlThread
2018-12-18T16:53:53.190Z,1545152033.190 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-12-18T16:53:53.190Z,1545152033.190 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-12-18T16:53:53.191Z,1545152033.191 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-12-18T16:53:53.191Z,1545152033.191 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-12-18T16:53:53.191Z,1545152033.191 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-12-18T16:53:53.192Z,1545152033.192 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-12-18T16:53:53.199Z,1545152033.199 [SBIT](INFO): Initialize SBIT Component.
2018-12-18T16:53:53.199Z,1545152033.199 [SBIT](IMPORTANT): git: 2018-12-13
2018-12-18T16:53:53.199Z,1545152033.199 [SBIT](INFO): git hash: 8200dc43e6ef01082c531ff0fab84136a371dc2d
2018-12-18T16:53:53.200Z,1545152033.200 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2018-12-18T16:53:53.200Z,1545152033.200 [SBIT](IMPORTANT): Kernel Version:#2 PREEMPT Thu Jan 11 20:13:48 PST 2018
2018-12-18T16:53:53.201Z,1545152033.201 [SBIT](INFO): Beginning SBIT in 36.000000 seconds.
2018-12-18T16:53:53.202Z,1545152033.202 [IBIT](INFO): Initialize IBIT Component.
2018-12-18T16:53:53.203Z,1545152033.203 [CBIT](DEBUG): Initialize CBIT Component.
2018-12-18T16:53:53.204Z,1545152033.204 [logger ThreadHandler](INFO): Handler Thread ID is 8967
2018-12-18T16:53:53.217Z,1545152033.217 [CBIT](DEBUG): Initialized mux pins.
2018-12-18T16:53:53.217Z,1545152033.217 [CBIT](DEBUG): Initializing the watchdog timer.
2018-12-18T16:53:53.221Z,1545152033.221 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 8968
2018-12-18T16:53:53.227Z,1545152033.227 [Radio_Surface](INFO): Powering up
2018-12-18T16:53:53.237Z,1545152033.237 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 8969
2018-12-18T16:53:53.238Z,1545152033.238 [CTD_NeilBrown](INFO): Powering down
2018-12-18T16:53:53.245Z,1545152033.245 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-12-18T16:53:53.245Z,1545152033.245 [CBIT](DEBUG): Initializing heartbeat.
2018-12-18T16:53:53.265Z,1545152033.265 [CTD_Seabird ThreadHandler](INFO): Handler Thread ID is 8970
2018-12-18T16:53:53.266Z,1545152033.266 [CTD_Seabird](DEBUG): Initializing CTD_Seabird.
2018-12-18T16:53:53.270Z,1545152033.270 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 8972
2018-12-18T16:53:53.271Z,1545152033.271 [WetLabsBB2FL](INFO): Powering down
2018-12-18T16:53:53.289Z,1545152033.289 [CTD_Seabird](INFO): Opening uart, block timeout 10ths=20
2018-12-18T16:53:53.297Z,1545152033.297 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 8973
2018-12-18T16:53:53.307Z,1545152033.307 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-12-18T16:53:53.307Z,1545152033.307 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2018-12-18T16:53:53.307Z,1545152033.307 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-12-18T16:53:53.307Z,1545152033.307 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2018-12-18T16:53:53.308Z,1545152033.308 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-12-18T16:53:53.308Z,1545152033.308 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2018-12-18T16:53:53.308Z,1545152033.308 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-12-18T16:53:53.308Z,1545152033.308 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2018-12-18T16:53:53.308Z,1545152033.308 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-12-18T16:53:53.308Z,1545152033.308 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2018-12-18T16:53:53.317Z,1545152033.317 [CBIT](DEBUG): Deactivating GF circuits.
2018-12-18T16:53:53.317Z,1545152033.317 [CBIT](DEBUG): Deactivating emergency mode.
2018-12-18T16:53:53.317Z,1545152033.317 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-12-18T16:53:53.317Z,1545152033.317 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2018-12-18T16:53:53.318Z,1545152033.318 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-12-18T16:53:53.318Z,1545152033.318 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2018-12-18T16:53:53.318Z,1545152033.318 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-12-18T16:53:53.318Z,1545152033.318 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2018-12-18T16:53:53.357Z,1545152033.357 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-12-18T16:53:53.359Z,1545152033.359 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-12-18T16:53:53.360Z,1545152033.360 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-12-18T16:53:53.360Z,1545152033.360 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-12-18T16:53:53.360Z,1545152033.360 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-18T16:53:53.361Z,1545152033.361 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T16:53:53.362Z,1545152033.362 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T16:53:53.362Z,1545152033.362 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-12-18T16:53:53.363Z,1545152033.363 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-12-18T16:53:53.363Z,1545152033.363 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-12-18T16:53:53.386Z,1545152033.386 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-18T16:53:53.425Z,1545152033.425 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-12-18T16:53:53.425Z,1545152033.425 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-12-18T16:53:53.527Z,1545152033.527 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-12-18T16:53:53.528Z,1545152033.528 [Default:A.Wait](DEBUG): Construct Wait.
2018-12-18T16:53:53.530Z,1545152033.530 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-12-18T16:53:53.552Z,1545152033.552 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-12-18T16:53:53.587Z,1545152033.587 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-12-18T16:53:53.592Z,1545152033.592 [Default:E.Execute](DEBUG): Construct Execute.
2018-12-18T16:53:53.624Z,1545152033.624 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-12-18T16:53:53.628Z,1545152033.628 [controlThread](DEBUG): Component order: CycleStarter,DataOverHttps,Depth_Keller,DropWeight,NAL9602,Onboard,PNI_TCM,PAR_Licor,Depth_Keller,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,YawRateCalculator,ElevatorOffsetCalculator,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-12-18T16:53:53.666Z,1545152033.666 [DataOverHttps](DEBUG): dashIP=134.89.2.23 starts with a digit so assuming it is a numeric IP
2018-12-18T16:53:53.686Z,1545152033.686 [Depth_Keller](ERROR): Pressure reading out of range: 1831.023193 decibar
2018-12-18T16:53:53.890Z,1545152033.890 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-12-18T16:53:54.166Z,1545152034.166 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-12-18T16:53:54.177Z,1545152034.177 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-12-18T16:53:54.207Z,1545152034.207 [ElevatorServo](DEBUG): Initializing EZServoServo.
2018-12-18T16:53:54.225Z,1545152034.225 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-12-18T16:53:54.250Z,1545152034.250 [MassServo](DEBUG): Initializing EZServoServo.
2018-12-18T16:53:54.261Z,1545152034.261 [MassServo](DEBUG): Initializing MassServo.
2018-12-18T16:53:54.282Z,1545152034.282 [RudderServo](DEBUG): Initializing EZServoServo.
2018-12-18T16:53:54.293Z,1545152034.293 [RudderServo](DEBUG): Initializing RudderServo.
2018-12-18T16:53:54.302Z,1545152034.302 [ThrusterServo](DEBUG): Initializing EZServoServo.
2018-12-18T16:53:54.325Z,1545152034.325 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-12-18T16:54:05.959Z,1545152045.959 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.004184
2018-12-18T16:54:21.987Z,1545152061.987 [NAL9602](INFO): Powering up NAL9602
2018-12-18T16:54:29.676Z,1545152069.676 [SBIT](IMPORTANT): Beginning Startup BIT
2018-12-18T16:54:29.682Z,1545152069.682 [CBIT](IMPORTANT): Beginning ground fault scan
2018-12-18T16:54:32.918Z,1545152072.918 [NAL9602](INFO): NAL9602 initialized
2018-12-18T16:54:40.580Z,1545152080.580 [CBIT](IMPORTANT): Ground fault detected
mA:
CHAN A0 (Batt): 4.657929
CHAN A1 (24V): -0.006746
CHAN A2 (12V): -0.002274
CHAN A3 (5V): -0.000994
CHAN B0 (3.3V): 4.766929
CHAN B1 (3.15aV): -0.000182
CHAN B2 (3.15bV): 0.000169
CHAN B3 (GND): -0.000103
OPEN: -0.000335
Full Scale Calc: 4.765 mA, -1.589 mA
2018-12-18T16:55:23.738Z,1545152123.738 [SBIT](IMPORTANT): SBIT PASSED
2018-12-18T16:55:23.817Z,1545152123.817 [CommandLine](IMPORTANT): got command configSet list
2018-12-18T16:55:23.818Z,1545152123.818 [CommandLine](IMPORTANT): Listing configuration overrides from Data/persisted.cfg
2018-12-18T16:55:23.818Z,1545152123.818 [CommandLine](IMPORTANT): Aanderaa_O2.loadAtStartup=0 bool;

2018-12-18T16:55:23.819Z,1545152123.819 [CommandLine](IMPORTANT): BPC1.batteryMuxCycleTime=10 minute;

2018-12-18T16:55:23.819Z,1545152123.819 [CommandLine](IMPORTANT): BPC1.loadAtStartup=0 bool;

2018-12-18T16:55:23.819Z,1545152123.819 [CommandLine](IMPORTANT): CTD_Seabird.loadAtStartup=1 bool;

2018-12-18T16:55:23.819Z,1545152123.819 [CommandLine](IMPORTANT): Express none CTD_NeilBrown.bin_mean_sea_water_salinity;

2018-12-18T16:55:23.819Z,1545152123.819 [CommandLine](IMPORTANT): Express none CTD_NeilBrown.bin_mean_sea_water_temperature 0.150000 kelvin;

2018-12-18T16:55:23.819Z,1545152123.819 [CommandLine](IMPORTANT): Express linearApproximation CTD_NeilBrown.bin_median_sea_water_salinity 0.020000 practical_salinity_unit;

2018-12-18T16:55:23.819Z,1545152123.819 [CommandLine](IMPORTANT): Express linearApproximation CTD_NeilBrown.bin_median_sea_water_temperature 0.150000 kelvin;

2018-12-18T16:55:23.819Z,1545152123.819 [CommandLine](IMPORTANT): Express none VerticalTemperatureHomogeneityIndexCalculator.vertical_temperature_homogeneity_index;

2018-12-18T16:55:23.819Z,1545152123.819 [CommandLine](IMPORTANT): Express linearApproximation height_above_sea_floor 5.000000 meter;

2018-12-18T16:55:23.820Z,1545152123.820 [CommandLine](IMPORTANT): Rowe_600LCM.loadAtStartup=0 bool;

2018-12-18T16:55:23.820Z,1545152123.820 [CommandLine](IMPORTANT): VerticalControl.buoyancyNeutral=213 cubic_centimeter;

2018-12-18T16:55:23.820Z,1545152123.820 [CommandLine](IMPORTANT): VerticalControl.massDefault=4 millimeter;

2018-12-18T16:55:24.112Z,1545152124.112 [MissionManager](IMPORTANT): Started mission Startup
2018-12-18T16:55:24.112Z,1545152124.112 [Startup] Running Loop=1
2018-12-18T16:55:24.112Z,1545152124.112 [Startup](DEBUG): Aggregate::initialize Startup
2018-12-18T16:55:24.112Z,1545152124.112 [Startup:A.GoToSurface] Running Loop=1
2018-12-18T16:55:24.113Z,1545152124.113 [Startup:A.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2018-12-18T16:55:24.113Z,1545152124.113 [Startup:A.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2018-12-18T16:55:24.114Z,1545152124.114 [Startup:A.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2018-12-18T16:55:24.114Z,1545152124.114 [Startup:A.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2018-12-18T16:55:24.114Z,1545152124.114 [Startup:A.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2018-12-18T16:55:24.115Z,1545152124.115 [Startup:A.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2018-12-18T16:55:24.133Z,1545152124.133 [Startup:StartupSatComms] Running Loop=1
2018-12-18T16:55:24.133Z,1545152124.133 [Startup:StartupSatComms](DEBUG): Aggregate::initialize Startup:StartupSatComms
2018-12-18T16:55:24.133Z,1545152124.133 [Startup:StartupSatComms:A] Running Loop=1
2018-12-18T16:55:24.512Z,1545152124.512 [Startup:StartupSatComms:A](DEBUG): Initialize ReadDataComponent to sense latitude_fix
2018-12-18T16:56:24.503Z,1545152184.503 [Startup:StartupSatComms:A](INFO): Timed out from 2018-12-18T16:55:24.1Z
2018-12-18T16:56:24.503Z,1545152184.503 [Startup:StartupSatComms:A] Stopped
2018-12-18T16:56:24.503Z,1545152184.503 [Startup:StartupSatComms:B] Running Loop=1
2018-12-18T16:56:24.909Z,1545152184.909 [Startup:StartupSatComms:B](DEBUG): Initialize ReadDataComponent to sense platform_communications
2018-12-18T16:56:28.861Z,1545152188.861 [DataOverHttps](INFO): Sending 939 bytes from file Logs/20181218T165344/Express0001.lzma
2018-12-18T16:56:29.627Z,1545152189.627 [DataOverHttps](INFO): Moved sent file to Logs/20181218T165344/Express0001.lzma.bak
2018-12-18T16:56:29.627Z,1545152189.627 [DataOverHttps](INFO): SBD MOMSN=9084405
2018-12-18T16:56:30.095Z,1545152190.095 [Startup:StartupSatComms:B] Stopped
2018-12-18T16:56:30.095Z,1545152190.095 [Startup:StartupSatComms](INFO): Completed Startup:StartupSatComms
2018-12-18T16:56:30.095Z,1545152190.095 [Startup:StartupSatComms] Stopped
2018-12-18T16:56:30.095Z,1545152190.095 [Startup:StartupSatComms](DEBUG): Aggregate::uninitialize Startup:StartupSatComms
2018-12-18T16:56:30.096Z,1545152190.096 [Startup](INFO): Completed Startup
2018-12-18T16:56:30.096Z,1545152190.096 [MissionManager](INFO): Startup is completed.
2018-12-18T16:56:30.098Z,1545152190.098 [MissionManager](INFO): Uninitializing Mission Startup
2018-12-18T16:56:30.098Z,1545152190.098 [Startup] Stopped
2018-12-18T16:56:30.098Z,1545152190.098 [Startup](DEBUG): Aggregate::uninitialize Startup
2018-12-18T16:56:30.098Z,1545152190.098 [Startup:A.GoToSurface] Stopped
2018-12-18T16:56:30.098Z,1545152190.098 [Startup:A.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2018-12-18T16:56:30.501Z,1545152190.501 [MissionManager](IMPORTANT): Started mission Default
2018-12-18T16:56:30.502Z,1545152190.502 [Default] Running Loop=1
2018-12-18T16:56:30.502Z,1545152190.502 [Default](DEBUG): Aggregate::initialize Default
2018-12-18T16:56:30.502Z,1545152190.502 [Default:B.GoToSurface] Running Loop=1
2018-12-18T16:56:30.502Z,1545152190.502 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2018-12-18T16:56:30.502Z,1545152190.502 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2018-12-18T16:56:30.502Z,1545152190.502 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2018-12-18T16:56:30.503Z,1545152190.503 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2018-12-18T16:56:30.503Z,1545152190.503 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2018-12-18T16:56:30.503Z,1545152190.503 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2018-12-18T16:56:30.504Z,1545152190.504 [Default:A.Wait] Running Loop=1
2018-12-18T16:56:30.504Z,1545152190.504 [Default:A.Wait](DEBUG): Initialize Wait Component.
2018-12-18T16:56:43.673Z,1545152203.673 [Default:A.Wait](INFO): Done Waiting.
2018-12-18T16:56:43.673Z,1545152203.673 [Default:A.Wait] Stopped
2018-12-18T16:56:43.673Z,1545152203.673 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2018-12-18T16:56:44.048Z,1545152204.048 [Default:CheckIn] Running Loop=1
2018-12-18T16:56:44.077Z,1545152204.077 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2018-12-18T16:56:44.077Z,1545152204.077 [Default:CheckIn:Read_GPS] Running Loop=1
2018-12-18T16:56:44.478Z,1545152204.478 [Default:CheckIn:Read_GPS](DEBUG): Initialize ReadDataComponent to sense time_fix
2018-12-18T16:56:52.894Z,1545152212.894 [CommandLine](IMPORTANT): got command run ./Missions/Insert/Science.xml
2018-12-18T16:56:52.894Z,1545152212.894 [MissionManager](INFO): Loading Mission: ./Missions/Insert/Science.xml
2018-12-18T16:56:53.085Z,1545152213.085 [MissionManager](INFO): DefineArg Science.SampleISUS = 0 bool
2018-12-18T16:56:53.088Z,1545152213.088 [MissionManager](INFO): DefineArg Science.SampleISUSmaxPitch = 60.000000 arcdeg
2018-12-18T16:56:53.091Z,1545152213.091 [MissionManager](INFO): DefineArg Science.SampleISUSminPitch = -60.000000 arcdeg
2018-12-18T16:56:53.094Z,1545152213.094 [MissionManager](INFO): DefineArg Science.PeakDetectChlActive = 0 bool
2018-12-18T16:56:53.097Z,1545152213.097 [MissionManager](INFO): DefineArg Science.TimeWindowPeakReport = nan min
2018-12-18T16:56:53.100Z,1545152213.100 [MissionManager](INFO): DefineArg Science.HighestChlPeakReportActive = 0 bool
2018-12-18T16:56:53.103Z,1545152213.103 [MissionManager](INFO): DefineArg Science.PatchTracking = 0 bool
2018-12-18T16:56:53.106Z,1545152213.106 [MissionManager](INFO): DefineArg Science.FilterWidthHorizontal = 3.000000 count
2018-12-18T16:56:53.109Z,1545152213.109 [MissionManager](INFO): DefineArg Science.NumProfilesSlidingwindow = 100.000000 count
2018-12-18T16:56:53.112Z,1545152213.112 [MissionManager](INFO): DefineArg Science.OffPeakFractionHorizontal = 80.000000 %
2018-12-18T16:56:53.115Z,1545152213.115 [MissionManager](INFO): DefineArg Science.PeakDetectNO3Active = 0 bool
2018-12-18T16:56:53.138Z,1545152213.138 [MissionManager](INFO): DefineArg Science.PeakDetectOilActive = 0 bool
2018-12-18T16:56:53.145Z,1545152213.145 [MissionManager](INFO): DefineArg Science.PeakDetectFDOMActive = 0 bool
2018-12-18T16:56:53.155Z,1545152213.155 [MissionManager](INFO): DefineArg Science.UpwardDerivativeOfTemperatureActive = 0 bool
2018-12-18T16:56:53.159Z,1545152213.159 [MissionManager](INFO): DefineArg Science.EnabledAanderaaO2 = 0.000000 bool
2018-12-18T16:56:53.171Z,1545152213.171 [MissionManager](INFO): DefineArg Science.EnabledNeilBrown = 1.000000 bool
2018-12-18T16:56:53.175Z,1545152213.175 [MissionManager](INFO): DefineArg Science.EnabledSeabird = 1.000000 bool
2018-12-18T16:56:53.234Z,1545152213.234 [MissionManager](INFO): DefineArg Science.EnabledTurbulence_NPS = 0.000000 bool
2018-12-18T16:56:53.242Z,1545152213.242 [MissionManager](INFO): DefineArg Science.EnabledWetLabsBB2FL = 1.000000 bool
2018-12-18T16:56:53.245Z,1545152213.245 [MissionManager](INFO): DefineArg Science.EnabledWetLabsSeaOWL_UV_A = 0.000000 bool
2018-12-18T16:56:53.275Z,1545152213.275 [MissionManager](INFO): DefineArg Science.EnabledWetLabsUBAT = 0.000000 bool
2018-12-18T16:56:53.279Z,1545152213.279 [MissionManager](INFO): DefineArg Science.EnabledISUS = 0.000000 bool
2018-12-18T16:56:53.297Z,1545152213.297 [MissionManager](INFO): DefineArg Science.LowPassWindowLength = 20.000000 count
2018-12-18T16:56:53.300Z,1545152213.300 [MissionManager](INFO): DefineArg Science.PeakChlShallowBound = nan m
2018-12-18T16:56:53.303Z,1545152213.303 [MissionManager](INFO): DefineArg Science.PeakChlDeepBound = nan m
2018-12-18T16:56:53.306Z,1545152213.306 [MissionManager](INFO): DefineArg Science.PeakShallowBound = nan m
2018-12-18T16:56:53.330Z,1545152213.330 [MissionManager](INFO): DefineArg Science.PeakDeepBound = nan m
2018-12-18T16:56:53.334Z,1545152213.334 [MissionManager](INFO): DefineOutput Science.PeakChl = 0.000000 ug/l
2018-12-18T16:56:53.340Z,1545152213.340 [MissionManager](INFO): DefineOutput Science.PeakChlDepth = 0.000000 m
2018-12-18T16:56:53.343Z,1545152213.343 [MissionManager](INFO): DefineOutput Science.PeakChlTemperature = 0.000000 degC
2018-12-18T16:56:53.347Z,1545152213.347 [MissionManager](INFO): DefineOutput Science.PeakChlLatitude = nan arcdeg
2018-12-18T16:56:53.374Z,1545152213.374 [MissionManager](INFO): DefineOutput Science.PeakChlLongitude = nan arcdeg
2018-12-18T16:56:53.377Z,1545152213.377 [MissionManager](INFO): DefineOutput Science.PeakNO3 = 0.000000 umol/l
2018-12-18T16:56:53.387Z,1545152213.387 [MissionManager](INFO): DefineOutput Science.PeakNO3Depth = 0.000000 m
2018-12-18T16:56:53.390Z,1545152213.390 [MissionManager](INFO): DefineOutput Science.PeakNO3Latitude = nan arcdeg
2018-12-18T16:56:53.393Z,1545152213.393 [MissionManager](INFO): DefineOutput Science.PeakNO3Longitude = nan arcdeg
2018-12-18T16:56:53.410Z,1545152213.410 [MissionManager](INFO): DefineOutput Science.PatchChl = 0.000000 m
2018-12-18T16:56:53.414Z,1545152213.414 [MissionManager](INFO): DefineOutput Science.PatchChlDepth = 0.000000 m
2018-12-18T16:56:53.417Z,1545152213.417 [MissionManager](INFO): DefineOutput Science.PatchChlLatitude = nan arcdeg
2018-12-18T16:56:53.420Z,1545152213.420 [MissionManager](INFO): DefineOutput Science.PatchChlLongitude = nan arcdeg
2018-12-18T16:56:53.439Z,1545152213.439 [MissionManager](INFO): DefineOutput Science.PatchChlDistance = nan m
2018-12-18T16:56:53.444Z,1545152213.444 [MissionManager](INFO): DefineOutput Science.PeakOil = 0.000000 kg/m3
2018-12-18T16:56:53.455Z,1545152213.455 [MissionManager](INFO): DefineOutput Science.PeakOilDepth = 0.000000 m
2018-12-18T16:56:53.458Z,1545152213.458 [MissionManager](INFO): DefineOutput Science.PeakOilLatitude = nan arcdeg
2018-12-18T16:56:53.461Z,1545152213.461 [MissionManager](INFO): DefineOutput Science.PeakOilLongitude = nan arcdeg
2018-12-18T16:56:53.464Z,1545152213.464 [MissionManager](INFO): DefineOutput Science.PeakFDOM = 0.000000 ppb
2018-12-18T16:56:53.503Z,1545152213.503 [MissionManager](INFO): DefineOutput Science.PeakFDOMDepth = 0.000000 m
2018-12-18T16:56:53.506Z,1545152213.506 [MissionManager](INFO): DefineOutput Science.PeakFDOMLatitude = nan arcdeg
2018-12-18T16:56:53.510Z,1545152213.510 [MissionManager](INFO): DefineOutput Science.PeakFDOMLongitude = nan arcdeg
2018-12-18T16:56:53.527Z,1545152213.527 [MissionManager](INFO): DefineOutput Science.PatchFDOMDistance = nan m
2018-12-18T16:56:53.571Z,1545152213.571 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2018-12-18T16:56:53.641Z,1545152213.641 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Construct PeakDetectHorizontal.
2018-12-18T16:56:53.660Z,1545152213.660 [DeadReckonUsingSpeedCalculator](ERROR): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = 1000166.822716
2018-12-18T16:56:53.660Z,1545152213.660 [DeadReckonUsingSpeedCalculator] Software Fault, FailCount= 1
2018-12-18T16:56:53.660Z,1545152213.660 [DeadReckonUsingSpeedCalculator](ERROR): Software Fault
2018-12-18T16:56:53.680Z,1545152213.680 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2018-12-18T16:56:53.705Z,1545152213.705 [CBIT](ERROR): Software Fault in component: DeadReckonUsingSpeedCalculator
2018-12-18T16:56:53.718Z,1545152213.718 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2018-12-18T16:56:53.736Z,1545152213.736 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2018-12-18T16:56:53.799Z,1545152213.799 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<!-- ====================
     Generated by TethysL
     ==================== -->
<Aggregate xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
           xmlns="Tethys"
           xmlns:Units="Tethys/Units"
           xmlns:Science="Tethys/Science"
           xmlns:Universal="Tethys/Universal"
           xmlns:Trigger="Tethys/Trigger"
           xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                               Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                               Tethys/Science http://okeanids.mbari.org/tethys/Xml/Science.xsd
                               Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd
                               Tethys/Trigger http://okeanids.mbari.org/tethys/Xml/Trigger.xsd"
       Id="Science">

    <DefineArg Name="SampleISUS"><Description>
        Set either this or PeakDetectNO3Active to True in order to sample
        Nitrate. EnabledISUS must also be true.
    </Description><False/></DefineArg>

    <DefineArg Name="SampleISUSmaxPitch"><Description>
        Maximum pitch to sample ISUS. (EnabledISUS must also be true.)
    </Description><Units:degree/><Value>60.0</Value></DefineArg>

    <DefineArg Name="SampleISUSminPitch"><Description>
        Minimum pitch to sample ISUS. (EnabledISUS must also be true.)
    </Description><Units:degree/><Value>-60.0</Value></DefineArg>

    <DefineArg Name="PeakDetectChlActive"><Description>
        Turns on peak detection of Cholorphyll.
    </Description><False/></DefineArg>

    <DefineArg Name="TimeWindowPeakReport"><Description>
        If greater than zero, report a peak every window. If NaN or zero, this
        variable is ignored.
    </Description><Units:minute/><Value>NaN</Value></DefineArg>

    <DefineArg Name="HighestChlPeakReportActive"><Description>
        Turns on reporting of the highest peak value on yo-yo profiles in a
        horizontal sliding window (of length numProfilesSlidingwindow)
    </Description><False/></DefineArg>

    <DefineArg Name="PatchTracking"><Description>
        If tracking a patch
    </Description><False/></DefineArg>

<!--debug
    </Description><True/></DefineArg>
-->

    <DefineArg Name="FilterWidthHorizontal"><Description>
        Width of boxcar filter applied to yoyo-wise chl peaks to pick out the
        highest peak.
    </Description><Units:count/><Value>3</Value></DefineArg>

    <DefineArg Name="NumProfilesSlidingwindow"><Description>
        Length of horizontal sliding window. The highest yoyo-wise chl peak
        (after low-pass filtering by a filter of length FilterWidthHorizontal)
        within this window.
    </Description><Units:count/><Value>100</Value></DefineArg>

    <DefineArg Name="OffPeakFractionHorizontal"><Description>
        When filtered horizontal value is this fraction of the peak, consider it
        outside the patch.
    </Description><Units:percent/><Value>80</Value></DefineArg>

    <DefineArg Name="PeakDetectNO3Active"><Description>
        Turns on peak detection of Nitrate (and turns on ISUS).
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectOilActive"><Description>
        Turns on peak detection of Dissolved Oil.
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectFDOMActive"><Description>
        Turns on peak detection of concentration_of_colored_dissolved_organic_matter_in_sea_water_expressed_as_equivalent_mass_fraction_of_quinine_sulfate_dihydrate from FDOM sensor.
    </Description><False/></DefineArg>
    
    <DefineArg Name="UpwardDerivativeOfTemperatureActive"><Description>
        Turns on seawater temperature derivative.
    </Description><False/></DefineArg>

    <DefineArg Name="EnabledAanderaaO2"><Description>
        Automatically set to True if the Aanderaa O2 sensor is installed. Set to
        false to disable reading Aandera O2.
    </Description><Science:Aanderaa_O2.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledNeilBrown"><Description>
        Automatically set to true if the Neil Brown CTD is enabled. Set to false
        to disable reading from the Neil Brown.
    </Description><Science:CTD_NeilBrown.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledSeabird"><Description>
        Automatically set to true if the CTD is enabled. Set to false to disable
        reading from the CTD.
    </Description><Science:CTD_Seabird.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledTurbulence_NPS"><Description>
        Automatically set to true if the NPS Turbulence sensor is enabled. Set
        to false to disable reading from the NPS Turbulence sensor.
    </Description><Science:Turbulence_NPS.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsBB2FL"><Description>
        Automatically set to true if the the WetLabs BB2FL is enabled. Set to
        false to disable the WetLabs BB2FL.
    </Description><Science:WetLabsBB2FL.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsSeaOWL_UV_A"><Description>
        Automatically set to true if the the WetLabs SeaOWL UV-A is enabled. Set
        to false to disable the WetLabs SeaOWL UV-A.
    </Description><Science:WetLabsSeaOWL_UV_A.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsUBAT"><Description>
        Automatically set to true if the the WetLabs UBAT is enabled. Set
        to false to disable the WetLabs UBAT.
    </Description><Science:WetLabsUBAT.loadAtStartup/></DefineArg>    

    <DefineArg Name="EnabledISUS"><Description>
        Automatically set to True if ISUS is enabled. Set to false to disable
        ISUS.
    </Description><Science:ISUS.loadAtStartup/></DefineArg>

    <DefineArg Name="LowPassWindowLength"><Description>
        Low-pass window length (based on depth sensor sampling interval 0.4
        second) for low-pass filtering.
    </Description><Units:count/><Value>20</Value></DefineArg>

    <DefineArg Name="PeakChlShallowBound"><Description>
        Shallow depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

<!--debug
    </Description><Units:meter/><Value>10</Value></DefineArg>
-->

    <DefineArg Name="PeakChlDeepBound"><Description>
        Deep depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

<!--debug
    </Description><Units:meter/><Value>20</Value></DefineArg>
-->

    <DefineArg Name="PeakShallowBound"><Description>
        Shallow depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakDeepBound"><Description>
        Deep depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineOutput Name="PeakChl"><Units:microgram_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlTemperature"><Units:celsius/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3"><Units:micromole_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Depth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Latitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Longitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChl"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlDistance"><Units:meter/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOil"><Units:kilogram_per_cubic_meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOilLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOM"><Units:part_per_billion/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>
    
    <DefineOutput Name="PatchFDOMDistance"><Units:meter/><Value>NaN</Value></DefineOutput>    
    
    <Parallel/>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledAanderaaO2"/>
        </While>
        <Universal:mass_concentration_of_oxygen_in_sea_water/>
    </ReadData>

    <ReadData>
        <While>
            <Arg Name="EnabledISUS"/>
            <And><Universal:platform_pitch_angle/><Lt><Arg Name="SampleISUSmaxPitch"/></Lt><And><Universal:platform_pitch_angle/><Gt><Arg Name="SampleISUSminPitch"/></Gt><And><Arg Name="SampleISUS"/><Or><Arg Name="PeakDetectNO3Active"/></Or></And></And></And>
        </While>
        <Universal:mole_concentration_of_nitrate_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
        </While>
        <Universal:sea_water_temperature/>
        <Universal:sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledSeabird"/>
        </While>
        <Science:CTD_Seabird.sea_water_temperature/>
        <Science:CTD_Seabird.sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
            <And><Arg Name="UpwardDerivativeOfTemperatureActive"/></And>
        </While>
        <Universal:upward_derivative_of_sea_water_temperature/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledTurbulence_NPS"/>
        </While>
        <Science:Turbulence_NPS.MicroCond/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsBB2FL"/>
            <Or><Arg Name="PeakDetectChlActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsUBAT"/>
        </While>
        <Science:WetLabsUBAT.biolum_potential/>
    </ReadData>

<!--debug-->

    <ReadData Id="Read_Oil" Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsSeaOWL_UV_A"/>
            <Or><Arg Name="PeakDetectOilActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <Aggregate Id="PeakDetectChl">

        <While>
            <Arg Name="PeakDetectChlActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_chlorophyll_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakChlShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakChlDeepBound"/></Setting>
            <OutputArg Name="PeakChl"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakChlDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakChlTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakChlLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakChlLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

<!--debug
        <Syslog Severity="Important">PeakChl, PeakChlLatitude, PeakChlLongitude = <Arg Name="PeakChl"/><Units:microgram_per_liter/>, <Arg Name="PeakChlLatitude"/><Units:degree/>, <Arg Name="PeakChlLongitude"/><Units:degree/></Syslog>
-->

        <SendData Service="Express"><Arg Name="PeakChl"/><Arg Name="PeakChlDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="HighestChlPeakReport">

        <While>
            <Arg Name="HighestChlPeakReportActive"/>
        </While>

        <Trigger:PeakDetectHorizontal>
            <Sequence/>
            <Setting><Trigger:PeakDetectHorizontal.detectFrom/><Arg Name="PeakChl"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.depthFrom/><Arg Name="PeakChlDepth"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.latitudeFrom/><Arg Name="PeakChlLatitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.longitudeFrom/><Arg Name="PeakChlLongitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.patchTracking/><Arg Name="PatchTracking"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.filterWidth/><Arg Name="FilterWidthHorizontal"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.numProfilesSlidingwindow/><Arg Name="NumProfilesSlidingwindow"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.offPeakFraction/><Arg Name="OffPeakFractionHorizontal"/></Setting>
            <OutputArg Name="PatchChl"><Trigger:PeakDetectHorizontal.peakDetect/></OutputArg>
            <OutputArg Name="PatchChlDepth"><Trigger:PeakDetectHorizontal.peakDepth/></OutputArg>
            <OutputArg Name="PatchChlLatitude"><Trigger:PeakDetectHorizontal.peakLatitude/></OutputArg>
            <OutputArg Name="PatchChlLongitude"><Trigger:PeakDetectHorizontal.peakLongitude/></OutputArg>
            <OutputArg Name="PatchChlDistance"><Trigger:PeakDetectHorizontal.peakDistance/></OutputArg>
        </Trigger:PeakDetectHorizontal>

    </Aggregate>

    <Aggregate Id="PeakDetectNO3">

        <While>
            <Arg Name="PeakDetectNO3Active"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mole_concentration_of_nitrate_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakNO3"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakNO3Depth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakNO3Latitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakNO3Longitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakNO3"/><Arg Name="PeakNO3Depth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectOil">

        <While>
            <Arg Name="PeakDetectOilActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_petroleum_hydrocarbons_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakOil"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakOilDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakOilLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakOilLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakOil"/><Arg Name="PeakOilDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectFDOM">

        <While>
            <Arg Name="PeakDetectFDOMActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:concentration_of_colored_dissolved_organic_matter_in_sea_water_expressed_as_equivalent_mass_fraction_of_quinine_sulfate_dihydrate/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakFDOM"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakFDOMDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakFDOMTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakFDOMLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakFDOMLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakFDOM"/><Arg Name="PeakFDOMDepth"/>
        </SendData>

    </Aggregate>

</Aggregate>


2018-12-18T16:56:53.810Z,1545152213.810 [CommandLine](IMPORTANT): Running ./Missions/Insert/Science.xml
2018-12-18T16:56:54.058Z,1545152214.058 [Default] Stopped
2018-12-18T16:56:54.059Z,1545152214.059 [Default](DEBUG): Aggregate::uninitialize Default
2018-12-18T16:56:54.059Z,1545152214.059 [Default:B.GoToSurface] Stopped
2018-12-18T16:56:54.059Z,1545152214.059 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2018-12-18T16:56:54.059Z,1545152214.059 [Default:CheckIn] Stopped
2018-12-18T16:56:54.059Z,1545152214.059 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2018-12-18T16:56:54.059Z,1545152214.059 [Default:CheckIn:Read_GPS] Stopped
2018-12-18T16:56:54.059Z,1545152214.059 [MissionManager](IMPORTANT): Started mission Science
2018-12-18T16:56:54.059Z,1545152214.059 [Science] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science](DEBUG): Aggregate::initialize Science
2018-12-18T16:56:54.060Z,1545152214.060 [Science:A] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science:B] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science:C] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science:D] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science:E] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science:F] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science:G] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science:H] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science:Read_Oil] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science:PeakDetectChl] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science:PeakDetectChl](DEBUG): Aggregate::initialize Science:PeakDetectChl
2018-12-18T16:56:54.060Z,1545152214.060 [Science:PeakDetectChl:A.PeakDetectVsDepth] Running Loop=1
2018-12-18T16:56:54.060Z,1545152214.060 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Initialize.
2018-12-18T16:56:54.082Z,1545152214.082 [Science:HighestChlPeakReport] Running Loop=1
2018-12-18T16:56:54.083Z,1545152214.083 [Science:HighestChlPeakReport](DEBUG): Aggregate::initialize Science:HighestChlPeakReport
2018-12-18T16:56:54.083Z,1545152214.083 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Running Loop=1
2018-12-18T16:56:54.083Z,1545152214.083 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](INFO): Initialize.
2018-12-18T16:56:54.083Z,1545152214.083 [Science:PeakDetectNO3] Running Loop=1
2018-12-18T16:56:54.083Z,1545152214.083 [Science:PeakDetectNO3](DEBUG): Aggregate::initialize Science:PeakDetectNO3
2018-12-18T16:56:54.084Z,1545152214.084 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Running Loop=1
2018-12-18T16:56:54.084Z,1545152214.084 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Initialize.
2018-12-18T16:56:54.090Z,1545152214.090 [Science:PeakDetectOil] Running Loop=1
2018-12-18T16:56:54.090Z,1545152214.090 [Science:PeakDetectOil](DEBUG): Aggregate::initialize Science:PeakDetectOil
2018-12-18T16:56:54.090Z,1545152214.090 [Science:PeakDetectOil:A.PeakDetectVsDepth] Running Loop=1
2018-12-18T16:56:54.090Z,1545152214.090 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Initialize.
2018-12-18T16:56:54.092Z,1545152214.092 [Science:PeakDetectFDOM] Running Loop=1
2018-12-18T16:56:54.092Z,1545152214.092 [Science:PeakDetectFDOM](DEBUG): Aggregate::initialize Science:PeakDetectFDOM
2018-12-18T16:56:54.101Z,1545152214.101 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Running Loop=1
2018-12-18T16:56:54.101Z,1545152214.101 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Initialize.
2018-12-18T16:56:54.103Z,1545152214.103 [Science:PeakDetectFDOM] Stopped
2018-12-18T16:56:54.104Z,1545152214.104 [Science:PeakDetectFDOM](DEBUG): Aggregate::uninitialize Science:PeakDetectFDOM
2018-12-18T16:56:54.104Z,1545152214.104 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Stopped
2018-12-18T16:56:54.104Z,1545152214.104 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2018-12-18T16:56:54.104Z,1545152214.104 [Science:PeakDetectOil] Stopped
2018-12-18T16:56:54.104Z,1545152214.104 [Science:PeakDetectOil](DEBUG): Aggregate::uninitialize Science:PeakDetectOil
2018-12-18T16:56:54.104Z,1545152214.104 [Science:PeakDetectOil:A.PeakDetectVsDepth] Stopped
2018-12-18T16:56:54.104Z,1545152214.104 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2018-12-18T16:56:54.104Z,1545152214.104 [Science:PeakDetectNO3] Stopped
2018-12-18T16:56:54.104Z,1545152214.104 [Science:PeakDetectNO3](DEBUG): Aggregate::uninitialize Science:PeakDetectNO3
2018-12-18T16:56:54.104Z,1545152214.104 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Stopped
2018-12-18T16:56:54.104Z,1545152214.104 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2018-12-18T16:56:54.104Z,1545152214.104 [Science:HighestChlPeakReport] Stopped
2018-12-18T16:56:54.113Z,1545152214.113 [Science:HighestChlPeakReport](DEBUG): Aggregate::uninitialize Science:HighestChlPeakReport
2018-12-18T16:56:54.113Z,1545152214.113 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Stopped
2018-12-18T16:56:54.113Z,1545152214.113 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Uninitialize.
2018-12-18T16:56:54.113Z,1545152214.113 [Science:PeakDetectChl] Stopped
2018-12-18T16:56:54.113Z,1545152214.113 [Science:PeakDetectChl](DEBUG): Aggregate::uninitialize Science:PeakDetectChl
2018-12-18T16:56:54.113Z,1545152214.113 [Science:PeakDetectChl:A.PeakDetectVsDepth] Stopped
2018-12-18T16:56:54.113Z,1545152214.113 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2018-12-18T16:56:54.113Z,1545152214.113 [Science:Read_Oil] Stopped
2018-12-18T16:56:54.113Z,1545152214.113 [Science:H] Stopped
2018-12-18T16:56:54.113Z,1545152214.113 [Science:G] Running Loop=1
2018-12-18T16:56:54.114Z,1545152214.114 [Science:G](DEBUG): Initialize ReadDataComponent to sense mass_concentration_of_chlorophyll_in_sea_water
2018-12-18T16:56:54.116Z,1545152214.116 [Science:F] Stopped
2018-12-18T16:56:54.116Z,1545152214.116 [Science:E] Stopped
2018-12-18T16:56:54.116Z,1545152214.116 [Science:D] Running Loop=1
2018-12-18T16:56:54.116Z,1545152214.116 [Science:D](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_temperature
2018-12-18T16:56:54.119Z,1545152214.119 [Science:D](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_salinity
2018-12-18T16:56:54.120Z,1545152214.120 [Science:C] Running Loop=1
2018-12-18T16:56:54.121Z,1545152214.121 [Science:C](DEBUG): Initialize ReadDataComponent to sense sea_water_temperature
2018-12-18T16:56:54.122Z,1545152214.122 [Science:C](DEBUG): Initialize ReadDataComponent to sense sea_water_salinity
2018-12-18T16:56:54.123Z,1545152214.123 [Science:B] Stopped
2018-12-18T16:56:54.123Z,1545152214.123 [Science:A] Stopped
2018-12-18T16:56:54.142Z,1545152214.142 [CBIT](INFO): Clearing failed state for component DeadReckonUsingSpeedCalculator
2018-12-18T16:56:54.142Z,1545152214.142 [DeadReckonUsingSpeedCalculator] No Fault, FailCount= 1
2018-12-18T16:56:54.257Z,1545152214.257 [CTD_NeilBrown](DEBUG): Initializing CTD_NeilBrown.
2018-12-18T16:56:54.259Z,1545152214.259 [CTD_NeilBrown](INFO): Opening uart, block timeout 10ths=4
2018-12-18T16:56:54.293Z,1545152214.293 [CTD_Seabird](INFO): Opening uart, block timeout 10ths=20
2018-12-18T16:56:54.339Z,1545152214.339 [WetLabsBB2FL](INFO): Opening uart, block timeout 10ths=2
2018-12-18T16:56:54.339Z,1545152214.339 [WetLabsBB2FL](INFO): Powering up
2018-12-18T16:56:54.464Z,1545152214.464 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-18T16:56:54.469Z,1545152214.469 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T16:56:54.470Z,1545152214.470 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T16:56:55.895Z,1545152215.895 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.079500 psu
2018-12-18T16:56:56.255Z,1545152216.255 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:56.259Z,1545152216.259 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.066800 psu
2018-12-18T16:56:56.262Z,1545152216.262 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:56.459Z,1545152216.459 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.062000 psu
2018-12-18T16:56:56.463Z,1545152216.463 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:56.663Z,1545152216.663 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.072000 psu
2018-12-18T16:56:56.666Z,1545152216.666 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:56.867Z,1545152216.867 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.069500 psu
2018-12-18T16:56:56.873Z,1545152216.873 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:57.071Z,1545152217.071 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.070200 psu
2018-12-18T16:56:57.074Z,1545152217.074 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:57.275Z,1545152217.275 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.066800 psu
2018-12-18T16:56:57.279Z,1545152217.279 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:57.306Z,1545152217.306 [CTD_Seabird](ERROR): Failed to parse device response: <!--startlogging-->
2018-12-18T16:56:57.479Z,1545152217.479 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.071700 psu
2018-12-18T16:56:57.482Z,1545152217.482 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:57.683Z,1545152217.683 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.068700 psu
2018-12-18T16:56:57.686Z,1545152217.686 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:57.887Z,1545152217.887 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.078400 psu
2018-12-18T16:56:57.891Z,1545152217.891 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:58.093Z,1545152218.093 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.063100 psu
2018-12-18T16:56:58.096Z,1545152218.096 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:58.295Z,1545152218.295 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.071300 psu
2018-12-18T16:56:58.298Z,1545152218.298 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:58.499Z,1545152218.499 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.065800 psu
2018-12-18T16:56:58.502Z,1545152218.502 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:58.703Z,1545152218.703 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.065600 psu
2018-12-18T16:56:58.715Z,1545152218.715 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:58.907Z,1545152218.907 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.073300 psu
2018-12-18T16:56:58.911Z,1545152218.911 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:59.111Z,1545152219.111 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.055800 psu
2018-12-18T16:56:59.114Z,1545152219.114 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:59.315Z,1545152219.315 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.059800 psu
2018-12-18T16:56:59.318Z,1545152219.318 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:59.321Z,1545152219.321 [CTD_Seabird](ERROR): Salinity reading out of range: 0.018783 psu
2018-12-18T16:56:59.326Z,1545152219.326 [CommandLine](IMPORTANT): got command stop
2018-12-18T16:56:59.327Z,1545152219.327 [CommandLine](IMPORTANT): Scheduling is paused
2018-12-18T16:56:59.327Z,1545152219.327 [Supervisor](INFO): Stop Mission called by CommandLine::commandStop
2018-12-18T16:56:59.519Z,1545152219.519 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.062500 psu
2018-12-18T16:56:59.523Z,1545152219.523 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T16:56:59.685Z,1545152219.685 [MissionManager](INFO): MissionManager is completed.
2018-12-18T16:56:59.686Z,1545152219.686 [MissionManager](INFO): Uninitializing Mission Science
2018-12-18T16:56:59.686Z,1545152219.686 [Science] Stopped
2018-12-18T16:56:59.686Z,1545152219.686 [Science](DEBUG): Aggregate::uninitialize Science
2018-12-18T16:56:59.686Z,1545152219.686 [Science:C] Stopped
2018-12-18T16:56:59.687Z,1545152219.687 [Science:D] Stopped
2018-12-18T16:56:59.687Z,1545152219.687 [Science:G] Stopped
2018-12-18T16:57:00.038Z,1545152220.038 [WetLabsBB2FL](INFO): Powering down
2018-12-18T16:57:00.057Z,1545152220.057 [MissionManager](IMPORTANT): Started mission Default
2018-12-18T16:57:00.058Z,1545152220.058 [Default] Running Loop=1
2018-12-18T16:57:00.058Z,1545152220.058 [Default](DEBUG): Aggregate::initialize Default
2018-12-18T16:57:00.058Z,1545152220.058 [Default:B.GoToSurface] Running Loop=1
2018-12-18T16:57:00.058Z,1545152220.058 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2018-12-18T16:57:00.058Z,1545152220.058 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2018-12-18T16:57:00.058Z,1545152220.058 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2018-12-18T16:57:00.059Z,1545152220.059 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2018-12-18T16:57:00.059Z,1545152220.059 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2018-12-18T16:57:00.059Z,1545152220.059 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2018-12-18T16:57:00.060Z,1545152220.060 [Default:A.Wait] Running Loop=1
2018-12-18T16:57:00.060Z,1545152220.060 [Default:A.Wait](DEBUG): Initialize Wait Component.
2018-12-18T16:57:13.246Z,1545152233.246 [Default:A.Wait](INFO): Done Waiting.
2018-12-18T16:57:13.247Z,1545152233.247 [Default:A.Wait] Stopped
2018-12-18T16:57:13.247Z,1545152233.247 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2018-12-18T16:57:13.641Z,1545152233.641 [Default:CheckIn] Running Loop=1
2018-12-18T16:57:13.641Z,1545152233.641 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2018-12-18T16:57:13.641Z,1545152233.641 [Default:CheckIn:Read_GPS] Running Loop=1
2018-12-18T16:59:00.802Z,1545152340.802 [DataOverHttps](INFO): Exceeded connect timeout, disconnecting.
2018-12-18T16:59:36.415Z,1545152376.415 [NAL9602](FAULT): MT Queue status failed to be acquired within timeout. Will not retry this session.
2018-12-18T16:59:54.484Z,1545152394.484 [DeadReckonUsingSpeedCalculator](ERROR): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = 1000347.646745
2018-12-18T16:59:54.484Z,1545152394.484 [DeadReckonUsingSpeedCalculator] Software Fault, FailCount= 2
2018-12-18T16:59:54.484Z,1545152394.484 [DeadReckonUsingSpeedCalculator](ERROR): Software Fault
2018-12-18T16:59:54.516Z,1545152394.516 [CBIT](ERROR): Software Fault in component: DeadReckonUsingSpeedCalculator
2018-12-18T16:59:54.888Z,1545152394.888 [CBIT](INFO): Clearing failed state for component DeadReckonUsingSpeedCalculator
2018-12-18T16:59:54.888Z,1545152394.888 [DeadReckonUsingSpeedCalculator] No Fault, FailCount= 2
2018-12-18T16:59:55.278Z,1545152395.278 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-18T16:59:55.279Z,1545152395.279 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T16:59:55.279Z,1545152395.279 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T17:02:13.827Z,1545152533.827 [Default:CheckIn:Read_GPS](INFO): Timed out from 2018-12-18T16:57:13.6Z
2018-12-18T17:02:13.827Z,1545152533.827 [Default:CheckIn:Read_GPS] Stopped
2018-12-18T17:02:13.828Z,1545152533.828 [Default:CheckIn:Read_Iridium] Running Loop=1
2018-12-18T17:02:14.197Z,1545152534.197 [Default:CheckIn:Read_Iridium](DEBUG): Initialize ReadDataComponent to sense platform_communications
2018-12-18T17:02:18.198Z,1545152538.198 [DataOverHttps](INFO): Sending 25 bytes from file Logs/20181218T165344/Courier0004.lzma
2018-12-18T17:02:18.999Z,1545152538.999 [DataOverHttps](INFO): Moved sent file to Logs/20181218T165344/Courier0004.lzma.bak
2018-12-18T17:02:18.999Z,1545152538.999 [DataOverHttps](INFO): SBD MOMSN=9084461
2018-12-18T17:02:27.876Z,1545152547.876 [DataOverHttps](INFO): Sending 278 bytes from file Logs/20181218T165344/Express0005.lzma
2018-12-18T17:02:28.675Z,1545152548.675 [DataOverHttps](INFO): Moved sent file to Logs/20181218T165344/Express0005.lzma.bak
2018-12-18T17:02:28.675Z,1545152548.675 [DataOverHttps](INFO): SBD MOMSN=9084463
2018-12-18T17:02:29.120Z,1545152549.120 [Default:CheckIn:Read_Iridium] Stopped
2018-12-18T17:02:29.121Z,1545152549.121 [Default:CheckIn:C.Wait] Running Loop=1
2018-12-18T17:02:29.121Z,1545152549.121 [Default:CheckIn:C.Wait](DEBUG): Initialize Wait Component.
2018-12-18T17:02:55.591Z,1545152575.591 [DeadReckonUsingSpeedCalculator](ERROR): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = 1000528.753533
2018-12-18T17:02:55.591Z,1545152575.591 [DeadReckonUsingSpeedCalculator] Software Fault, FailCount= 3
2018-12-18T17:02:55.591Z,1545152575.591 [DeadReckonUsingSpeedCalculator](ERROR): Software Fault
2018-12-18T17:02:55.603Z,1545152575.603 [CBIT](ERROR): Software Fault in component: DeadReckonUsingSpeedCalculator
2018-12-18T17:02:55.998Z,1545152575.998 [CBIT](INFO): Clearing failed state for component DeadReckonUsingSpeedCalculator
2018-12-18T17:02:55.998Z,1545152575.998 [DeadReckonUsingSpeedCalculator] No Fault, FailCount= 3
2018-12-18T17:02:56.403Z,1545152576.403 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-18T17:02:56.403Z,1545152576.403 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T17:02:56.404Z,1545152576.404 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T17:04:34.378Z,1545152674.378 [NAL9602](FAULT): GPS failed to acquire within timeout.
2018-12-18T17:04:34.378Z,1545152674.378 [NAL9602] Data Fault, FailCount= 1
2018-12-18T17:04:34.379Z,1545152674.379 [NAL9602](ERROR): Data Fault
2018-12-18T17:04:34.444Z,1545152674.444 [CBIT](ERROR): Data Fault in component: NAL9602
2018-12-18T17:04:34.774Z,1545152674.774 [NAL9602](INFO): Powering down
2018-12-18T17:04:35.635Z,1545152675.635 [CBIT](INFO): Clearing failed state for component NAL9602
2018-12-18T17:04:35.635Z,1545152675.635 [NAL9602] No Fault, FailCount= 1
2018-12-18T17:04:59.570Z,1545152699.570 [DataOverHttps](INFO): Exceeded connect timeout, disconnecting.
2018-12-18T17:05:04.778Z,1545152704.778 [NAL9602](INFO): Powering up NAL9602
2018-12-18T17:05:15.975Z,1545152715.975 [NAL9602](INFO): NAL9602 initialized
2018-12-18T17:05:56.440Z,1545152756.440 [DeadReckonUsingSpeedCalculator](ERROR): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = 1000709.602352
2018-12-18T17:05:56.440Z,1545152756.440 [DeadReckonUsingSpeedCalculator] Software Fault, FailCount= 4
2018-12-18T17:05:56.440Z,1545152756.440 [DeadReckonUsingSpeedCalculator](ERROR): Software Fault
2018-12-18T17:05:56.451Z,1545152756.451 [CBIT](ERROR): Software Fault in component: DeadReckonUsingSpeedCalculator
2018-12-18T17:05:56.879Z,1545152756.879 [CBIT](INFO): Clearing failed state for component DeadReckonUsingSpeedCalculator
2018-12-18T17:05:56.879Z,1545152756.879 [DeadReckonUsingSpeedCalculator] No Fault, FailCount= 4
2018-12-18T17:05:57.270Z,1545152757.270 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-18T17:05:57.270Z,1545152757.270 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T17:05:57.270Z,1545152757.270 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T17:07:12.322Z,1545152832.322 [CommandLine](IMPORTANT): got command run ./Missions/Insert/Science.xml
2018-12-18T17:07:12.323Z,1545152832.323 [MissionManager](INFO): Loading Mission: ./Missions/Insert/Science.xml
2018-12-18T17:07:12.610Z,1545152832.610 [MissionManager](INFO): DefineArg Science.SampleISUS = 0 bool
2018-12-18T17:07:12.612Z,1545152832.612 [MissionManager](INFO): DefineArg Science.SampleISUSmaxPitch = 60.000000 arcdeg
2018-12-18T17:07:12.614Z,1545152832.614 [MissionManager](INFO): DefineArg Science.SampleISUSminPitch = -60.000000 arcdeg
2018-12-18T17:07:12.616Z,1545152832.616 [MissionManager](INFO): DefineArg Science.PeakDetectChlActive = 0 bool
2018-12-18T17:07:12.618Z,1545152832.618 [MissionManager](INFO): DefineArg Science.TimeWindowPeakReport = nan min
2018-12-18T17:07:12.620Z,1545152832.620 [MissionManager](INFO): DefineArg Science.HighestChlPeakReportActive = 0 bool
2018-12-18T17:07:12.622Z,1545152832.622 [MissionManager](INFO): DefineArg Science.PatchTracking = 0 bool
2018-12-18T17:07:12.624Z,1545152832.624 [MissionManager](INFO): DefineArg Science.FilterWidthHorizontal = 3.000000 count
2018-12-18T17:07:12.626Z,1545152832.626 [MissionManager](INFO): DefineArg Science.NumProfilesSlidingwindow = 100.000000 count
2018-12-18T17:07:12.628Z,1545152832.628 [MissionManager](INFO): DefineArg Science.OffPeakFractionHorizontal = 80.000000 %
2018-12-18T17:07:12.666Z,1545152832.666 [MissionManager](INFO): DefineArg Science.PeakDetectNO3Active = 0 bool
2018-12-18T17:07:12.668Z,1545152832.668 [MissionManager](INFO): DefineArg Science.PeakDetectOilActive = 0 bool
2018-12-18T17:07:12.670Z,1545152832.670 [MissionManager](INFO): DefineArg Science.PeakDetectFDOMActive = 0 bool
2018-12-18T17:07:12.672Z,1545152832.672 [MissionManager](INFO): DefineArg Science.UpwardDerivativeOfTemperatureActive = 0 bool
2018-12-18T17:07:12.674Z,1545152832.674 [MissionManager](INFO): DefineArg Science.EnabledAanderaaO2 = 0.000000 bool
2018-12-18T17:07:12.687Z,1545152832.687 [MissionManager](INFO): DefineArg Science.EnabledNeilBrown = 1.000000 bool
2018-12-18T17:07:12.690Z,1545152832.690 [MissionManager](INFO): DefineArg Science.EnabledSeabird = 1.000000 bool
2018-12-18T17:07:12.693Z,1545152832.693 [MissionManager](INFO): DefineArg Science.EnabledTurbulence_NPS = 0.000000 bool
2018-12-18T17:07:12.695Z,1545152832.695 [MissionManager](INFO): DefineArg Science.EnabledWetLabsBB2FL = 1.000000 bool
2018-12-18T17:07:12.723Z,1545152832.723 [MissionManager](INFO): DefineArg Science.EnabledWetLabsSeaOWL_UV_A = 0.000000 bool
2018-12-18T17:07:12.726Z,1545152832.726 [MissionManager](INFO): DefineArg Science.EnabledWetLabsUBAT = 0.000000 bool
2018-12-18T17:07:12.728Z,1545152832.728 [MissionManager](INFO): DefineArg Science.EnabledISUS = 0.000000 bool
2018-12-18T17:07:12.730Z,1545152832.730 [MissionManager](INFO): DefineArg Science.LowPassWindowLength = 20.000000 count
2018-12-18T17:07:12.732Z,1545152832.732 [MissionManager](INFO): DefineArg Science.PeakChlShallowBound = nan m
2018-12-18T17:07:12.758Z,1545152832.758 [MissionManager](INFO): DefineArg Science.PeakChlDeepBound = nan m
2018-12-18T17:07:12.760Z,1545152832.760 [MissionManager](INFO): DefineArg Science.PeakShallowBound = nan m
2018-12-18T17:07:12.762Z,1545152832.762 [MissionManager](INFO): DefineArg Science.PeakDeepBound = nan m
2018-12-18T17:07:12.783Z,1545152832.783 [MissionManager](INFO): DefineOutput Science.PeakChl = 0.000000 ug/l
2018-12-18T17:07:12.787Z,1545152832.787 [MissionManager](INFO): DefineOutput Science.PeakChlDepth = 0.000000 m
2018-12-18T17:07:12.817Z,1545152832.817 [MissionManager](INFO): DefineOutput Science.PeakChlTemperature = 0.000000 degC
2018-12-18T17:07:12.819Z,1545152832.819 [MissionManager](INFO): DefineOutput Science.PeakChlLatitude = nan arcdeg
2018-12-18T17:07:12.834Z,1545152832.834 [MissionManager](INFO): DefineOutput Science.PeakChlLongitude = nan arcdeg
2018-12-18T17:07:12.836Z,1545152832.836 [MissionManager](INFO): DefineOutput Science.PeakNO3 = 0.000000 umol/l
2018-12-18T17:07:12.851Z,1545152832.851 [MissionManager](INFO): DefineOutput Science.PeakNO3Depth = 0.000000 m
2018-12-18T17:07:12.866Z,1545152832.866 [MissionManager](INFO): DefineOutput Science.PeakNO3Latitude = nan arcdeg
2018-12-18T17:07:12.874Z,1545152832.874 [MissionManager](INFO): DefineOutput Science.PeakNO3Longitude = nan arcdeg
2018-12-18T17:07:12.876Z,1545152832.876 [MissionManager](INFO): DefineOutput Science.PatchChl = 0.000000 m
2018-12-18T17:07:12.883Z,1545152832.883 [MissionManager](INFO): DefineOutput Science.PatchChlDepth = 0.000000 m
2018-12-18T17:07:12.897Z,1545152832.897 [MissionManager](INFO): DefineOutput Science.PatchChlLatitude = nan arcdeg
2018-12-18T17:07:12.900Z,1545152832.900 [MissionManager](INFO): DefineOutput Science.PatchChlLongitude = nan arcdeg
2018-12-18T17:07:12.914Z,1545152832.914 [MissionManager](INFO): DefineOutput Science.PatchChlDistance = nan m
2018-12-18T17:07:12.916Z,1545152832.916 [MissionManager](INFO): DefineOutput Science.PeakOil = 0.000000 kg/m3
2018-12-18T17:07:12.926Z,1545152832.926 [MissionManager](INFO): DefineOutput Science.PeakOilDepth = 0.000000 m
2018-12-18T17:07:12.935Z,1545152832.935 [MissionManager](INFO): DefineOutput Science.PeakOilLatitude = nan arcdeg
2018-12-18T17:07:12.954Z,1545152832.954 [MissionManager](INFO): DefineOutput Science.PeakOilLongitude = nan arcdeg
2018-12-18T17:07:12.956Z,1545152832.956 [MissionManager](INFO): DefineOutput Science.PeakFDOM = 0.000000 ppb
2018-12-18T17:07:12.963Z,1545152832.963 [MissionManager](INFO): DefineOutput Science.PeakFDOMDepth = 0.000000 m
2018-12-18T17:07:12.969Z,1545152832.969 [MissionManager](INFO): DefineOutput Science.PeakFDOMLatitude = nan arcdeg
2018-12-18T17:07:12.972Z,1545152832.972 [MissionManager](INFO): DefineOutput Science.PeakFDOMLongitude = nan arcdeg
2018-12-18T17:07:12.974Z,1545152832.974 [MissionManager](INFO): DefineOutput Science.PatchFDOMDistance = nan m
2018-12-18T17:07:13.022Z,1545152833.022 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2018-12-18T17:07:13.053Z,1545152833.053 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Construct PeakDetectHorizontal.
2018-12-18T17:07:13.072Z,1545152833.072 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2018-12-18T17:07:13.102Z,1545152833.102 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2018-12-18T17:07:13.124Z,1545152833.124 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2018-12-18T17:07:13.233Z,1545152833.233 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<!-- ====================
     Generated by TethysL
     ==================== -->
<Aggregate xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
           xmlns="Tethys"
           xmlns:Units="Tethys/Units"
           xmlns:Science="Tethys/Science"
           xmlns:Universal="Tethys/Universal"
           xmlns:Trigger="Tethys/Trigger"
           xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                               Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                               Tethys/Science http://okeanids.mbari.org/tethys/Xml/Science.xsd
                               Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd
                               Tethys/Trigger http://okeanids.mbari.org/tethys/Xml/Trigger.xsd"
       Id="Science">

    <DefineArg Name="SampleISUS"><Description>
        Set either this or PeakDetectNO3Active to True in order to sample
        Nitrate. EnabledISUS must also be true.
    </Description><False/></DefineArg>

    <DefineArg Name="SampleISUSmaxPitch"><Description>
        Maximum pitch to sample ISUS. (EnabledISUS must also be true.)
    </Description><Units:degree/><Value>60.0</Value></DefineArg>

    <DefineArg Name="SampleISUSminPitch"><Description>
        Minimum pitch to sample ISUS. (EnabledISUS must also be true.)
    </Description><Units:degree/><Value>-60.0</Value></DefineArg>

    <DefineArg Name="PeakDetectChlActive"><Description>
        Turns on peak detection of Cholorphyll.
    </Description><False/></DefineArg>

    <DefineArg Name="TimeWindowPeakReport"><Description>
        If greater than zero, report a peak every window. If NaN or zero, this
        variable is ignored.
    </Description><Units:minute/><Value>NaN</Value></DefineArg>

    <DefineArg Name="HighestChlPeakReportActive"><Description>
        Turns on reporting of the highest peak value on yo-yo profiles in a
        horizontal sliding window (of length numProfilesSlidingwindow)
    </Description><False/></DefineArg>

    <DefineArg Name="PatchTracking"><Description>
        If tracking a patch
    </Description><False/></DefineArg>

<!--debug
    </Description><True/></DefineArg>
-->

    <DefineArg Name="FilterWidthHorizontal"><Description>
        Width of boxcar filter applied to yoyo-wise chl peaks to pick out the
        highest peak.
    </Description><Units:count/><Value>3</Value></DefineArg>

    <DefineArg Name="NumProfilesSlidingwindow"><Description>
        Length of horizontal sliding window. The highest yoyo-wise chl peak
        (after low-pass filtering by a filter of length FilterWidthHorizontal)
        within this window.
    </Description><Units:count/><Value>100</Value></DefineArg>

    <DefineArg Name="OffPeakFractionHorizontal"><Description>
        When filtered horizontal value is this fraction of the peak, consider it
        outside the patch.
    </Description><Units:percent/><Value>80</Value></DefineArg>

    <DefineArg Name="PeakDetectNO3Active"><Description>
        Turns on peak detection of Nitrate (and turns on ISUS).
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectOilActive"><Description>
        Turns on peak detection of Dissolved Oil.
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectFDOMActive"><Description>
        Turns on peak detection of concentration_of_colored_dissolved_organic_matter_in_sea_water_expressed_as_equivalent_mass_fraction_of_quinine_sulfate_dihydrate from FDOM sensor.
    </Description><False/></DefineArg>
    
    <DefineArg Name="UpwardDerivativeOfTemperatureActive"><Description>
        Turns on seawater temperature derivative.
    </Description><False/></DefineArg>

    <DefineArg Name="EnabledAanderaaO2"><Description>
        Automatically set to True if the Aanderaa O2 sensor is installed. Set to
        false to disable reading Aandera O2.
    </Description><Science:Aanderaa_O2.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledNeilBrown"><Description>
        Automatically set to true if the Neil Brown CTD is enabled. Set to false
        to disable reading from the Neil Brown.
    </Description><Science:CTD_NeilBrown.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledSeabird"><Description>
        Automatically set to true if the CTD is enabled. Set to false to disable
        reading from the CTD.
    </Description><Science:CTD_Seabird.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledTurbulence_NPS"><Description>
        Automatically set to true if the NPS Turbulence sensor is enabled. Set
        to false to disable reading from the NPS Turbulence sensor.
    </Description><Science:Turbulence_NPS.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsBB2FL"><Description>
        Automatically set to true if the the WetLabs BB2FL is enabled. Set to
        false to disable the WetLabs BB2FL.
    </Description><Science:WetLabsBB2FL.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsSeaOWL_UV_A"><Description>
        Automatically set to true if the the WetLabs SeaOWL UV-A is enabled. Set
        to false to disable the WetLabs SeaOWL UV-A.
    </Description><Science:WetLabsSeaOWL_UV_A.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsUBAT"><Description>
        Automatically set to true if the the WetLabs UBAT is enabled. Set
        to false to disable the WetLabs UBAT.
    </Description><Science:WetLabsUBAT.loadAtStartup/></DefineArg>    

    <DefineArg Name="EnabledISUS"><Description>
        Automatically set to True if ISUS is enabled. Set to false to disable
        ISUS.
    </Description><Science:ISUS.loadAtStartup/></DefineArg>

    <DefineArg Name="LowPassWindowLength"><Description>
        Low-pass window length (based on depth sensor sampling interval 0.4
        second) for low-pass filtering.
    </Description><Units:count/><Value>20</Value></DefineArg>

    <DefineArg Name="PeakChlShallowBound"><Description>
        Shallow depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

<!--debug
    </Description><Units:meter/><Value>10</Value></DefineArg>
-->

    <DefineArg Name="PeakChlDeepBound"><Description>
        Deep depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

<!--debug
    </Description><Units:meter/><Value>20</Value></DefineArg>
-->

    <DefineArg Name="PeakShallowBound"><Description>
        Shallow depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakDeepBound"><Description>
        Deep depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineOutput Name="PeakChl"><Units:microgram_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlTemperature"><Units:celsius/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3"><Units:micromole_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Depth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Latitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Longitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChl"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlDistance"><Units:meter/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOil"><Units:kilogram_per_cubic_meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOilLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOM"><Units:part_per_billion/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>
    
    <DefineOutput Name="PatchFDOMDistance"><Units:meter/><Value>NaN</Value></DefineOutput>    
    
    <Parallel/>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledAanderaaO2"/>
        </While>
        <Universal:mass_concentration_of_oxygen_in_sea_water/>
    </ReadData>

    <ReadData>
        <While>
            <Arg Name="EnabledISUS"/>
            <And><Universal:platform_pitch_angle/><Lt><Arg Name="SampleISUSmaxPitch"/></Lt><And><Universal:platform_pitch_angle/><Gt><Arg Name="SampleISUSminPitch"/></Gt><And><Arg Name="SampleISUS"/><Or><Arg Name="PeakDetectNO3Active"/></Or></And></And></And>
        </While>
        <Universal:mole_concentration_of_nitrate_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
        </While>
        <Universal:sea_water_temperature/>
        <Universal:sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledSeabird"/>
        </While>
        <Science:CTD_Seabird.sea_water_temperature/>
        <Science:CTD_Seabird.sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
            <And><Arg Name="UpwardDerivativeOfTemperatureActive"/></And>
        </While>
        <Universal:upward_derivative_of_sea_water_temperature/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledTurbulence_NPS"/>
        </While>
        <Science:Turbulence_NPS.MicroCond/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsBB2FL"/>
            <Or><Arg Name="PeakDetectChlActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsUBAT"/>
        </While>
        <Science:WetLabsUBAT.biolum_potential/>
    </ReadData>

<!--debug-->

    <ReadData Id="Read_Oil" Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsSeaOWL_UV_A"/>
            <Or><Arg Name="PeakDetectOilActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <Aggregate Id="PeakDetectChl">

        <While>
            <Arg Name="PeakDetectChlActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_chlorophyll_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakChlShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakChlDeepBound"/></Setting>
            <OutputArg Name="PeakChl"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakChlDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakChlTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakChlLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakChlLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

<!--debug
        <Syslog Severity="Important">PeakChl, PeakChlLatitude, PeakChlLongitude = <Arg Name="PeakChl"/><Units:microgram_per_liter/>, <Arg Name="PeakChlLatitude"/><Units:degree/>, <Arg Name="PeakChlLongitude"/><Units:degree/></Syslog>
-->

        <SendData Service="Express"><Arg Name="PeakChl"/><Arg Name="PeakChlDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="HighestChlPeakReport">

        <While>
            <Arg Name="HighestChlPeakReportActive"/>
        </While>

        <Trigger:PeakDetectHorizontal>
            <Sequence/>
            <Setting><Trigger:PeakDetectHorizontal.detectFrom/><Arg Name="PeakChl"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.depthFrom/><Arg Name="PeakChlDepth"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.latitudeFrom/><Arg Name="PeakChlLatitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.longitudeFrom/><Arg Name="PeakChlLongitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.patchTracking/><Arg Name="PatchTracking"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.filterWidth/><Arg Name="FilterWidthHorizontal"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.numProfilesSlidingwindow/><Arg Name="NumProfilesSlidingwindow"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.offPeakFraction/><Arg Name="OffPeakFractionHorizontal"/></Setting>
            <OutputArg Name="PatchChl"><Trigger:PeakDetectHorizontal.peakDetect/></OutputArg>
            <OutputArg Name="PatchChlDepth"><Trigger:PeakDetectHorizontal.peakDepth/></OutputArg>
            <OutputArg Name="PatchChlLatitude"><Trigger:PeakDetectHorizontal.peakLatitude/></OutputArg>
            <OutputArg Name="PatchChlLongitude"><Trigger:PeakDetectHorizontal.peakLongitude/></OutputArg>
            <OutputArg Name="PatchChlDistance"><Trigger:PeakDetectHorizontal.peakDistance/></OutputArg>
        </Trigger:PeakDetectHorizontal>

    </Aggregate>

    <Aggregate Id="PeakDetectNO3">

        <While>
            <Arg Name="PeakDetectNO3Active"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mole_concentration_of_nitrate_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakNO3"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakNO3Depth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakNO3Latitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakNO3Longitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakNO3"/><Arg Name="PeakNO3Depth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectOil">

        <While>
            <Arg Name="PeakDetectOilActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_petroleum_hydrocarbons_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakOil"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakOilDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakOilLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakOilLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakOil"/><Arg Name="PeakOilDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectFDOM">

        <While>
            <Arg Name="PeakDetectFDOMActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:concentration_of_colored_dissolved_organic_matter_in_sea_water_expressed_as_equivalent_mass_fraction_of_quinine_sulfate_dihydrate/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakFDOM"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakFDOMDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakFDOMTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakFDOMLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakFDOMLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakFDOM"/><Arg Name="PeakFDOMDepth"/>
        </SendData>

    </Aggregate>

</Aggregate>


2018-12-18T17:07:13.235Z,1545152833.235 [CommandLine](IMPORTANT): Running ./Missions/Insert/Science.xml
2018-12-18T17:07:13.247Z,1545152833.247 [Default] Stopped
2018-12-18T17:07:13.247Z,1545152833.247 [Default](DEBUG): Aggregate::uninitialize Default
2018-12-18T17:07:13.247Z,1545152833.247 [Default:B.GoToSurface] Stopped
2018-12-18T17:07:13.247Z,1545152833.247 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2018-12-18T17:07:13.247Z,1545152833.247 [Default:CheckIn] Stopped
2018-12-18T17:07:13.247Z,1545152833.247 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2018-12-18T17:07:13.247Z,1545152833.247 [Default:CheckIn:C.Wait] Stopped
2018-12-18T17:07:13.247Z,1545152833.247 [Default:CheckIn:C.Wait](DEBUG): Uninitialize Wait Component.
2018-12-18T17:07:13.248Z,1545152833.248 [MissionManager](IMPORTANT): Started mission Science
2018-12-18T17:07:13.248Z,1545152833.248 [Science] Running Loop=1
2018-12-18T17:07:13.248Z,1545152833.248 [Science](DEBUG): Aggregate::initialize Science
2018-12-18T17:07:13.248Z,1545152833.248 [Science:A] Running Loop=1
2018-12-18T17:07:13.248Z,1545152833.248 [Science:B] Running Loop=1
2018-12-18T17:07:13.248Z,1545152833.248 [Science:C] Running Loop=1
2018-12-18T17:07:13.248Z,1545152833.248 [Science:D] Running Loop=1
2018-12-18T17:07:13.248Z,1545152833.248 [Science:E] Running Loop=1
2018-12-18T17:07:13.248Z,1545152833.248 [Science:F] Running Loop=1
2018-12-18T17:07:13.248Z,1545152833.248 [Science:G] Running Loop=1
2018-12-18T17:07:13.248Z,1545152833.248 [Science:H] Running Loop=1
2018-12-18T17:07:13.248Z,1545152833.248 [Science:Read_Oil] Running Loop=1
2018-12-18T17:07:13.257Z,1545152833.257 [Science:PeakDetectChl] Running Loop=1
2018-12-18T17:07:13.257Z,1545152833.257 [Science:PeakDetectChl](DEBUG): Aggregate::initialize Science:PeakDetectChl
2018-12-18T17:07:13.257Z,1545152833.257 [Science:PeakDetectChl:A.PeakDetectVsDepth] Running Loop=1
2018-12-18T17:07:13.258Z,1545152833.258 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Initialize.
2018-12-18T17:07:13.259Z,1545152833.259 [Science:HighestChlPeakReport] Running Loop=1
2018-12-18T17:07:13.259Z,1545152833.259 [Science:HighestChlPeakReport](DEBUG): Aggregate::initialize Science:HighestChlPeakReport
2018-12-18T17:07:13.260Z,1545152833.260 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Running Loop=1
2018-12-18T17:07:13.260Z,1545152833.260 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](INFO): Initialize.
2018-12-18T17:07:13.260Z,1545152833.260 [Science:PeakDetectNO3] Running Loop=1
2018-12-18T17:07:13.260Z,1545152833.260 [Science:PeakDetectNO3](DEBUG): Aggregate::initialize Science:PeakDetectNO3
2018-12-18T17:07:13.265Z,1545152833.265 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Running Loop=1
2018-12-18T17:07:13.265Z,1545152833.265 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Initialize.
2018-12-18T17:07:13.266Z,1545152833.266 [Science:PeakDetectOil] Running Loop=1
2018-12-18T17:07:13.266Z,1545152833.266 [Science:PeakDetectOil](DEBUG): Aggregate::initialize Science:PeakDetectOil
2018-12-18T17:07:13.266Z,1545152833.266 [Science:PeakDetectOil:A.PeakDetectVsDepth] Running Loop=1
2018-12-18T17:07:13.266Z,1545152833.266 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Initialize.
2018-12-18T17:07:13.267Z,1545152833.267 [Science:PeakDetectFDOM] Running Loop=1
2018-12-18T17:07:13.267Z,1545152833.267 [Science:PeakDetectFDOM](DEBUG): Aggregate::initialize Science:PeakDetectFDOM
2018-12-18T17:07:13.268Z,1545152833.268 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Running Loop=1
2018-12-18T17:07:13.268Z,1545152833.268 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Initialize.
2018-12-18T17:07:13.274Z,1545152833.274 [Science:PeakDetectFDOM] Stopped
2018-12-18T17:07:13.274Z,1545152833.274 [Science:PeakDetectFDOM](DEBUG): Aggregate::uninitialize Science:PeakDetectFDOM
2018-12-18T17:07:13.274Z,1545152833.274 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Stopped
2018-12-18T17:07:13.274Z,1545152833.274 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2018-12-18T17:07:13.274Z,1545152833.274 [Science:PeakDetectOil] Stopped
2018-12-18T17:07:13.274Z,1545152833.274 [Science:PeakDetectOil](DEBUG): Aggregate::uninitialize Science:PeakDetectOil
2018-12-18T17:07:13.274Z,1545152833.274 [Science:PeakDetectOil:A.PeakDetectVsDepth] Stopped
2018-12-18T17:07:13.274Z,1545152833.274 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2018-12-18T17:07:13.274Z,1545152833.274 [Science:PeakDetectNO3] Stopped
2018-12-18T17:07:13.275Z,1545152833.275 [Science:PeakDetectNO3](DEBUG): Aggregate::uninitialize Science:PeakDetectNO3
2018-12-18T17:07:13.275Z,1545152833.275 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Stopped
2018-12-18T17:07:13.275Z,1545152833.275 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2018-12-18T17:07:13.275Z,1545152833.275 [Science:HighestChlPeakReport] Stopped
2018-12-18T17:07:13.275Z,1545152833.275 [Science:HighestChlPeakReport](DEBUG): Aggregate::uninitialize Science:HighestChlPeakReport
2018-12-18T17:07:13.275Z,1545152833.275 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Stopped
2018-12-18T17:07:13.275Z,1545152833.275 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Uninitialize.
2018-12-18T17:07:13.275Z,1545152833.275 [Science:PeakDetectChl] Stopped
2018-12-18T17:07:13.275Z,1545152833.275 [Science:PeakDetectChl](DEBUG): Aggregate::uninitialize Science:PeakDetectChl
2018-12-18T17:07:13.275Z,1545152833.275 [Science:PeakDetectChl:A.PeakDetectVsDepth] Stopped
2018-12-18T17:07:13.275Z,1545152833.275 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2018-12-18T17:07:13.275Z,1545152833.275 [Science:Read_Oil] Stopped
2018-12-18T17:07:13.275Z,1545152833.275 [Science:H] Stopped
2018-12-18T17:07:13.276Z,1545152833.276 [Science:G] Running Loop=1
2018-12-18T17:07:13.276Z,1545152833.276 [Science:G](DEBUG): Initialize ReadDataComponent to sense mass_concentration_of_chlorophyll_in_sea_water
2018-12-18T17:07:13.286Z,1545152833.286 [Science:F] Stopped
2018-12-18T17:07:13.286Z,1545152833.286 [Science:E] Stopped
2018-12-18T17:07:13.286Z,1545152833.286 [Science:D] Running Loop=1
2018-12-18T17:07:13.286Z,1545152833.286 [Science:D](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_temperature
2018-12-18T17:07:13.287Z,1545152833.287 [Science:D](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_salinity
2018-12-18T17:07:13.287Z,1545152833.287 [Science:C] Running Loop=1
2018-12-18T17:07:13.288Z,1545152833.288 [Science:C](DEBUG): Initialize ReadDataComponent to sense sea_water_temperature
2018-12-18T17:07:13.288Z,1545152833.288 [Science:C](DEBUG): Initialize ReadDataComponent to sense sea_water_salinity
2018-12-18T17:07:13.296Z,1545152833.296 [CTD_NeilBrown](INFO): Opening uart, block timeout 10ths=4
2018-12-18T17:07:13.305Z,1545152833.305 [Science:B] Stopped
2018-12-18T17:07:13.305Z,1545152833.305 [Science:A] Stopped
2018-12-18T17:07:13.682Z,1545152833.682 [WetLabsBB2FL](INFO): Opening uart, block timeout 10ths=2
2018-12-18T17:07:13.682Z,1545152833.682 [WetLabsBB2FL](INFO): Powering up
2018-12-18T17:07:13.982Z,1545152833.982 [CTD_Seabird](INFO): Opening uart, block timeout 10ths=20
2018-12-18T17:07:14.727Z,1545152834.727 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.067100 psu
2018-12-18T17:07:14.731Z,1545152834.731 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:14.931Z,1545152834.931 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.072500 psu
2018-12-18T17:07:14.934Z,1545152834.934 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:15.135Z,1545152835.135 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.070800 psu
2018-12-18T17:07:15.139Z,1545152835.139 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:15.339Z,1545152835.339 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.076200 psu
2018-12-18T17:07:15.343Z,1545152835.343 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:15.543Z,1545152835.543 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.069000 psu
2018-12-18T17:07:15.547Z,1545152835.547 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:15.747Z,1545152835.747 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.062900 psu
2018-12-18T17:07:15.751Z,1545152835.751 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:15.951Z,1545152835.951 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.069200 psu
2018-12-18T17:07:15.955Z,1545152835.955 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:16.156Z,1545152836.156 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.072300 psu
2018-12-18T17:07:16.160Z,1545152836.160 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:16.359Z,1545152836.359 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.064900 psu
2018-12-18T17:07:16.363Z,1545152836.363 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:16.563Z,1545152836.563 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.065300 psu
2018-12-18T17:07:16.567Z,1545152836.567 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:16.767Z,1545152836.767 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.065800 psu
2018-12-18T17:07:16.770Z,1545152836.770 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:16.971Z,1545152836.971 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.067400 psu
2018-12-18T17:07:16.976Z,1545152836.976 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:16.994Z,1545152836.994 [CTD_Seabird](ERROR): Failed to parse device response: <!--startlogging-->
2018-12-18T17:07:17.175Z,1545152837.175 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.066500 psu
2018-12-18T17:07:17.183Z,1545152837.183 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:17.379Z,1545152837.379 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.075100 psu
2018-12-18T17:07:17.383Z,1545152837.383 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:17.584Z,1545152837.584 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.066100 psu
2018-12-18T17:07:17.587Z,1545152837.587 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:17.787Z,1545152837.787 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.070000 psu
2018-12-18T17:07:17.790Z,1545152837.790 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:17.992Z,1545152837.992 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.075000 psu
2018-12-18T17:07:17.995Z,1545152837.995 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:18.195Z,1545152838.195 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.069500 psu
2018-12-18T17:07:18.199Z,1545152838.199 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:18.400Z,1545152838.400 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.072100 psu
2018-12-18T17:07:18.407Z,1545152838.407 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:18.603Z,1545152838.603 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.067600 psu
2018-12-18T17:07:18.606Z,1545152838.606 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:18.807Z,1545152838.807 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.068300 psu
2018-12-18T17:07:18.812Z,1545152838.812 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:19.003Z,1545152839.003 [CTD_Seabird](ERROR): Salinity reading out of range: 0.018862 psu
2018-12-18T17:07:19.011Z,1545152839.011 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.068600 psu
2018-12-18T17:07:19.015Z,1545152839.015 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:19.121Z,1545152839.121 [CommandLine](IMPORTANT): got command stop
2018-12-18T17:07:19.122Z,1545152839.122 [Supervisor](INFO): Stop Mission called by CommandLine::commandStop
2018-12-18T17:07:19.216Z,1545152839.216 [CTD_NeilBrown](ERROR): Salinity reading out of range: -0.069500 psu
2018-12-18T17:07:19.219Z,1545152839.219 [CTD_NeilBrown](INFO): some bad data, not updating bins
2018-12-18T17:07:19.258Z,1545152839.258 [MissionManager](INFO): MissionManager is completed.
2018-12-18T17:07:19.258Z,1545152839.258 [MissionManager](INFO): Uninitializing Mission Science
2018-12-18T17:07:19.258Z,1545152839.258 [Science] Stopped
2018-12-18T17:07:19.258Z,1545152839.258 [Science](DEBUG): Aggregate::uninitialize Science
2018-12-18T17:07:19.259Z,1545152839.259 [Science:C] Stopped
2018-12-18T17:07:19.259Z,1545152839.259 [Science:D] Stopped
2018-12-18T17:07:19.259Z,1545152839.259 [Science:G] Stopped
2018-12-18T17:07:19.624Z,1545152839.624 [MissionManager](IMPORTANT): Started mission Default
2018-12-18T17:07:19.629Z,1545152839.629 [Default] Running Loop=1
2018-12-18T17:07:19.629Z,1545152839.629 [Default](DEBUG): Aggregate::initialize Default
2018-12-18T17:07:19.629Z,1545152839.629 [Default:B.GoToSurface] Running Loop=1
2018-12-18T17:07:19.629Z,1545152839.629 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2018-12-18T17:07:19.629Z,1545152839.629 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2018-12-18T17:07:19.630Z,1545152839.630 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2018-12-18T17:07:19.630Z,1545152839.630 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2018-12-18T17:07:19.630Z,1545152839.630 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2018-12-18T17:07:19.631Z,1545152839.631 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2018-12-18T17:07:19.631Z,1545152839.631 [Default:A.Wait] Running Loop=1
2018-12-18T17:07:19.631Z,1545152839.631 [Default:A.Wait](DEBUG): Initialize Wait Component.
2018-12-18T17:07:19.821Z,1545152839.821 [WetLabsBB2FL](INFO): Powering down
2018-12-18T17:07:33.566Z,1545152853.566 [Default:A.Wait](INFO): Done Waiting.
2018-12-18T17:07:33.567Z,1545152853.567 [Default:A.Wait] Stopped
2018-12-18T17:07:33.567Z,1545152853.567 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2018-12-18T17:07:33.681Z,1545152853.681 [Default:CheckIn] Running Loop=1
2018-12-18T17:07:33.681Z,1545152853.681 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2018-12-18T17:07:33.681Z,1545152853.681 [Default:CheckIn:Read_GPS] Running Loop=1
2018-12-18T17:08:57.618Z,1545152937.618 [DeadReckonUsingSpeedCalculator](ERROR): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = 1000890.779233
2018-12-18T17:08:57.618Z,1545152937.618 [DeadReckonUsingSpeedCalculator] Software Fault, FailCount= 5
2018-12-18T17:08:57.618Z,1545152937.618 [DeadReckonUsingSpeedCalculator](ERROR): Software Fault
2018-12-18T17:08:57.630Z,1545152937.630 [CBIT](ERROR): Software Fault in component: DeadReckonUsingSpeedCalculator
2018-12-18T17:08:58.043Z,1545152938.043 [CBIT](INFO): Clearing failed state for component DeadReckonUsingSpeedCalculator
2018-12-18T17:08:58.043Z,1545152938.043 [DeadReckonUsingSpeedCalculator] No Fault, FailCount= 5
2018-12-18T17:08:58.426Z,1545152938.426 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-18T17:08:58.427Z,1545152938.427 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T17:08:58.427Z,1545152938.427 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T17:11:58.807Z,1545153118.807 [DeadReckonUsingSpeedCalculator](ERROR): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = 1001071.969446
2018-12-18T17:11:58.807Z,1545153118.807 [DeadReckonUsingSpeedCalculator] Software Fault, FailCount= 6
2018-12-18T17:11:58.807Z,1545153118.807 [DeadReckonUsingSpeedCalculator](ERROR): Software Fault
2018-12-18T17:11:58.819Z,1545153118.819 [CBIT](ERROR): Software Fault in component: DeadReckonUsingSpeedCalculator
2018-12-18T17:11:59.224Z,1545153119.224 [CBIT](INFO): Clearing failed state for component DeadReckonUsingSpeedCalculator
2018-12-18T17:11:59.224Z,1545153119.224 [DeadReckonUsingSpeedCalculator] No Fault, FailCount= 6
2018-12-18T17:11:59.622Z,1545153119.622 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-12-18T17:11:59.623Z,1545153119.623 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-12-18T17:11:59.623Z,1545153119.623 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-12-18T17:12:13.293Z,1545153133.293 [CommandLine](IMPORTANT): got command restart system
2018-12-18T17:12:15.566Z,1545153135.566 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T17:12:15.573Z,1545153135.573 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:15.693Z,1545153135.693 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2018-12-18T17:12:15.693Z,1545153135.693 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:15.694Z,1545153135.694 [CommandLine](INFO): Join timeout helper Thread ID is 9017
2018-12-18T17:12:15.694Z,1545153135.694 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2018-12-18T17:12:15.694Z,1545153135.694 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:15.695Z,1545153135.695 [NavChartDb](INFO): Join timeout helper Thread ID is 9018
2018-12-18T17:12:16.053Z,1545153136.053 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T17:12:16.053Z,1545153136.053 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.061Z,1545153136.061 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2018-12-18T17:12:16.061Z,1545153136.061 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.061Z,1545153136.061 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 9019
2018-12-18T17:12:16.221Z,1545153136.221 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T17:12:16.221Z,1545153136.221 [WetLabsBB2FL](INFO): Powering down
2018-12-18T17:12:16.222Z,1545153136.222 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.233Z,1545153136.233 [ComponentRegistry](INFO): Shutting down CTD_Seabird ThreadHandler
2018-12-18T17:12:16.233Z,1545153136.233 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.233Z,1545153136.233 [CTD_Seabird](INFO): Join timeout helper Thread ID is 9020
2018-12-18T17:12:16.357Z,1545153136.357 [CTD_Seabird ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T17:12:16.357Z,1545153136.357 [CTD_Seabird](INFO): Powering down
2018-12-18T17:12:16.377Z,1545153136.377 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.397Z,1545153136.397 [ComponentRegistry](INFO): Shutting down CTD_NeilBrown ThreadHandler
2018-12-18T17:12:16.397Z,1545153136.397 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.397Z,1545153136.397 [CTD_NeilBrown](INFO): Join timeout helper Thread ID is 9021
2018-12-18T17:12:16.409Z,1545153136.409 [CTD_NeilBrown ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T17:12:16.409Z,1545153136.409 [CTD_NeilBrown](INFO): Powering down
2018-12-18T17:12:16.421Z,1545153136.421 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.422Z,1545153136.422 [ComponentRegistry](INFO): Shutting down Radio_Surface ThreadHandler
2018-12-18T17:12:16.423Z,1545153136.423 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.423Z,1545153136.423 [Radio_Surface](INFO): Join timeout helper Thread ID is 9022
2018-12-18T17:12:16.749Z,1545153136.749 [Radio_Surface ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T17:12:16.749Z,1545153136.749 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.758Z,1545153136.758 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2018-12-18T17:12:16.758Z,1545153136.758 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.758Z,1545153136.758 [logger](INFO): Join timeout helper Thread ID is 9023
2018-12-18T17:12:16.793Z,1545153136.793 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T17:12:16.793Z,1545153136.793 [logger ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.798Z,1545153136.798 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2018-12-18T17:12:16.798Z,1545153136.798 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.798Z,1545153136.798 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2018-12-18T17:12:16.798Z,1545153136.798 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:16.799Z,1545153136.799 [controlThread](INFO): Join timeout helper Thread ID is 9024
2018-12-18T17:12:16.816Z,1545153136.816 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2018-12-18T17:12:16.816Z,1545153136.816 [controlThread](DEBUG): Uninitializing ControlThread
2018-12-18T17:12:16.817Z,1545153136.817 [NAL9602](INFO): Powering down
2018-12-18T17:12:16.819Z,1545153136.819 [PNI_TCM](INFO): Powering down
2018-12-18T17:12:16.906Z,1545153136.906 [DepthRateCalculator](DEBUG): Uninitializing DepthRateCalculator.
2018-12-18T17:12:16.906Z,1545153136.906 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2018-12-18T17:12:16.907Z,1545153136.907 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2018-12-18T17:12:16.907Z,1545153136.907 [MissionManager](INFO): Uninitializing Mission Default
2018-12-18T17:12:16.908Z,1545153136.908 [Default] Stopped
2018-12-18T17:12:16.908Z,1545153136.908 [Default](DEBUG): Aggregate::uninitialize Default
2018-12-18T17:12:16.908Z,1545153136.908 [Default:B.GoToSurface] Stopped
2018-12-18T17:12:16.908Z,1545153136.908 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2018-12-18T17:12:16.908Z,1545153136.908 [Default:CheckIn] Stopped
2018-12-18T17:12:16.908Z,1545153136.908 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2018-12-18T17:12:16.908Z,1545153136.908 [Default:CheckIn:Read_GPS] Stopped
2018-12-18T17:12:16.911Z,1545153136.911 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2018-12-18T17:12:16.911Z,1545153136.911 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2018-12-18T17:12:16.912Z,1545153136.912 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2018-12-18T17:12:16.912Z,1545153136.912 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2018-12-18T17:12:16.912Z,1545153136.912 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-12-18T17:12:16.913Z,1545153136.913 [BuoyancyServo](INFO): Powering down
2018-12-18T17:12:16.925Z,1545153136.925 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2018-12-18T17:12:16.925Z,1545153136.925 [ElevatorServo](INFO): Powering down
2018-12-18T17:12:16.926Z,1545153136.926 [MassServo](DEBUG): Uninitialize Mass Servo.
2018-12-18T17:12:16.926Z,1545153136.926 [MassServo](INFO): Powering down
2018-12-18T17:12:16.927Z,1545153136.927 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2018-12-18T17:12:16.927Z,1545153136.927 [RudderServo](INFO): Powering down
2018-12-18T17:12:16.928Z,1545153136.928 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2018-12-18T17:12:16.928Z,1545153136.928 [ThrusterServo](INFO): Powering down
2018-12-18T17:12:16.929Z,1545153136.929 [SBIT](DEBUG): Uninitialize SBIT Component.
2018-12-18T17:12:16.929Z,1545153136.929 [IBIT](DEBUG): Uninitialize IBIT Component.
2018-12-18T17:12:16.929Z,1545153136.929 [CBIT](DEBUG): Uninitialize CBIT Component.
2018-12-18T17:12:16.929Z,1545153136.929 [CBIT](DEBUG): Powering off loads.
2018-12-18T17:12:16.941Z,1545153136.941 [CBIT](DEBUG): Disabling WDT.
2018-12-18T17:12:16.953Z,1545153136.953 [CBIT](DEBUG): Opening all GF detection circuits.
2018-12-18T17:12:16.954Z,1545153136.954 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:17.013Z,1545153137.013 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:17.055Z,1545153137.055 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:17.058Z,1545153137.058 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:17.062Z,1545153137.062 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:17.089Z,1545153137.089 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-12-18T17:12:17.150Z,1545153137.150 [logger ThreadHandler](INFO): Thread cancelled.