2018-06-04T05:01:53.663Z,1528088513.663 [Supervisor](DEBUG): Initializing supervisor.
2018-06-04T05:01:53.666Z,1528088513.666 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-06-04T05:01:53.666Z,1528088513.666 [SyncHandler](INFO): Protected caller Thread ID is 797
2018-06-04T05:01:53.667Z,1528088513.667 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-06-04T05:01:53.667Z,1528088513.667 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-06-04T05:01:53.668Z,1528088513.668 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 798
2018-06-04T05:01:53.671Z,1528088513.671 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-06-04T05:01:53.682Z,1528088513.682 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-06-04T05:01:53.683Z,1528088513.683 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-06-04T05:01:53.684Z,1528088513.684 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 799
2018-06-04T05:01:53.684Z,1528088513.684 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-06-04T05:01:53.685Z,1528088513.685 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-06-04T05:01:53.686Z,1528088513.686 [logger ThreadHandler](INFO): Protected caller Thread ID is 800
2018-06-04T05:01:53.688Z,1528088513.688 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-06-04T05:01:53.688Z,1528088513.688 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-06-04T05:01:53.692Z,1528088513.692 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-06-04T05:01:54.053Z,1528088514.053 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-06-04T05:01:54.055Z,1528088514.055 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-06-04T05:01:54.280Z,1528088514.280 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-06-04T05:01:54.281Z,1528088514.281 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-06-04T05:01:54.594Z,1528088514.594 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-06-04T05:01:54.596Z,1528088514.596 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-06-04T05:01:54.742Z,1528088514.742 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-06-04T05:01:54.743Z,1528088514.743 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-06-04T05:01:54.844Z,1528088514.844 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-06-04T05:01:54.844Z,1528088514.844 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-06-04T05:01:55.347Z,1528088515.347 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-06-04T05:01:55.349Z,1528088515.349 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-06-04T05:01:55.764Z,1528088515.764 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-06-04T05:01:55.766Z,1528088515.766 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-06-04T05:01:56.247Z,1528088516.247 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-06-04T05:01:56.249Z,1528088516.249 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-06-04T05:01:56.357Z,1528088516.357 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-06-04T05:01:56.358Z,1528088516.358 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-06-04T05:01:56.458Z,1528088516.458 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-06-04T05:01:56.459Z,1528088516.459 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-06-04T05:01:56.678Z,1528088516.678 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-06-04T05:01:56.679Z,1528088516.679 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-06-04T05:01:57.158Z,1528088517.158 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-06-04T05:01:57.158Z,1528088517.158 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-06-04T05:01:57.706Z,1528088517.706 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-06-04T05:01:57.707Z,1528088517.707 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-06-04T05:01:57.854Z,1528088517.854 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-06-04T05:01:57.855Z,1528088517.855 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-06-04T05:01:57.939Z,1528088517.939 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-daphne/
2018-06-04T05:01:57.942Z,1528088517.942 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Control.cfg
2018-06-04T05:01:58.050Z,1528088518.050 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/logger.cfg
2018-06-04T05:01:58.175Z,1528088518.175 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Servo.cfg
2018-06-04T05:01:58.272Z,1528088518.272 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Simulator.cfg
2018-06-04T05:01:58.359Z,1528088518.359 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Sensor.cfg
2018-06-04T05:01:58.519Z,1528088518.519 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/vehicle.cfg
2018-06-04T05:01:58.709Z,1528088518.709 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/workSite.cfg
2018-06-04T05:01:58.786Z,1528088518.786 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Battery.cfg
2018-06-04T05:01:59.026Z,1528088519.026 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2018-06-04T05:01:59.027Z,1528088519.027 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/secure.cfg
2018-06-04T05:01:59.112Z,1528088519.112 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Navigation.cfg
2018-06-04T05:01:59.204Z,1528088519.204 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/BIT.cfg
2018-06-04T05:01:59.308Z,1528088519.308 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Science.cfg
2018-06-04T05:01:59.439Z,1528088519.439 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2018-06-04T05:01:59.447Z,1528088519.447 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-06-04T05:01:59.741Z,1528088519.741 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-06-04T05:01:59.743Z,1528088519.743 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-06-04T05:01:59.801Z,1528088519.801 [DepthRateCalculator] Loaded
2018-06-04T05:01:59.801Z,1528088519.801 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-06-04T05:01:59.807Z,1528088519.807 [PitchRateCalculator] Loaded
2018-06-04T05:01:59.808Z,1528088519.808 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-06-04T05:01:59.825Z,1528088519.825 [SpeedCalculator] Loaded
2018-06-04T05:01:59.825Z,1528088519.825 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-06-04T05:01:59.847Z,1528088519.847 [TempGradientCalculator] Loaded
2018-06-04T05:01:59.847Z,1528088519.847 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-06-04T05:01:59.863Z,1528088519.863 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2018-06-04T05:01:59.864Z,1528088519.864 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2018-06-04T05:01:59.870Z,1528088519.870 [YawRateCalculator] Loaded
2018-06-04T05:01:59.870Z,1528088519.870 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-06-04T05:01:59.911Z,1528088519.911 [ElevatorOffsetCalculator] Loaded
2018-06-04T05:01:59.912Z,1528088519.912 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-06-04T05:01:59.912Z,1528088519.912 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-06-04T05:01:59.913Z,1528088519.913 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-06-04T05:02:00.036Z,1528088520.036 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2018-06-04T05:02:00.036Z,1528088520.036 [StratificationFrontDetector](DEBUG): (re)initializing
2018-06-04T05:02:00.036Z,1528088520.036 [StratificationFrontDetector] Loaded
2018-06-04T05:02:00.037Z,1528088520.037 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2018-06-04T05:02:00.037Z,1528088520.037 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-06-04T05:02:00.038Z,1528088520.038 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-06-04T05:02:00.175Z,1528088520.175 [BuoyancyServo] Loaded
2018-06-04T05:02:00.175Z,1528088520.175 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-06-04T05:02:00.191Z,1528088520.191 [ElevatorServo] Loaded
2018-06-04T05:02:00.191Z,1528088520.191 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-06-04T05:02:00.206Z,1528088520.206 [MassServo] Loaded
2018-06-04T05:02:00.206Z,1528088520.206 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-06-04T05:02:00.222Z,1528088520.222 [RudderServo] Loaded
2018-06-04T05:02:00.223Z,1528088520.223 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-06-04T05:02:00.238Z,1528088520.238 [ThrusterServo] Loaded
2018-06-04T05:02:00.238Z,1528088520.238 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-06-04T05:02:00.238Z,1528088520.238 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-06-04T05:02:00.239Z,1528088520.239 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-06-04T05:02:00.263Z,1528088520.263 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-06-04T05:02:00.264Z,1528088520.264 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-06-04T05:02:00.395Z,1528088520.395 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-06-04T05:02:00.396Z,1528088520.396 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-06-04T05:02:00.965Z,1528088520.965 [DataOverHttps] Loaded
2018-06-04T05:02:00.965Z,1528088520.965 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2018-06-04T05:02:00.980Z,1528088520.980 [Depth_Keller] Loaded
2018-06-04T05:02:00.980Z,1528088520.980 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2018-06-04T05:02:00.985Z,1528088520.985 [DropWeight] Loaded
2018-06-04T05:02:00.985Z,1528088520.985 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2018-06-04T05:02:01.087Z,1528088521.087 [NAL9602] Loaded
2018-06-04T05:02:01.088Z,1528088521.088 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2018-06-04T05:02:01.104Z,1528088521.104 [Onboard] Loaded
2018-06-04T05:02:01.105Z,1528088521.105 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2018-06-04T05:02:01.115Z,1528088521.115 [Radio_Surface] Loaded
2018-06-04T05:02:01.116Z,1528088521.116 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2018-06-04T05:02:01.117Z,1528088521.117 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408844E0
2018-06-04T05:02:01.117Z,1528088521.117 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 882
2018-06-04T05:02:01.250Z,1528088521.250 [DAT] Loaded
2018-06-04T05:02:01.250Z,1528088521.250 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2018-06-04T05:02:01.406Z,1528088521.406 [PNI_TCM] Loaded
2018-06-04T05:02:01.406Z,1528088521.406 [ComponentRegistry](DEBUG): SyncComponent "PNI_TCM" handled in the control thread.
2018-06-04T05:02:01.469Z,1528088521.469 [Rowe_600LCM] Loaded
2018-06-04T05:02:01.470Z,1528088521.470 [ComponentRegistry](DEBUG): Component "Rowe_600LCM" handled in its own thread.
2018-06-04T05:02:01.471Z,1528088521.471 [Rowe_600LCM ThreadHandler](DEBUG): Created PCaller Thread at 408B44E0
2018-06-04T05:02:01.471Z,1528088521.471 [Rowe_600LCM ThreadHandler](INFO): Protected caller Thread ID is 883
2018-06-04T05:02:03.324Z,1528088523.324 [BPC1] Loaded
2018-06-04T05:02:03.324Z,1528088523.324 [ComponentRegistry](DEBUG): SyncComponent "BPC1" handled in the control thread.
2018-06-04T05:02:03.325Z,1528088523.325 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2018-06-04T05:02:03.326Z,1528088523.326 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-06-04T05:02:03.918Z,1528088523.918 [SBIT](DEBUG): Construct Startup Built In Test.
2018-06-04T05:02:03.948Z,1528088523.948 [SBIT] Loaded
2018-06-04T05:02:03.948Z,1528088523.948 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-06-04T05:02:03.949Z,1528088523.949 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-06-04T05:02:03.961Z,1528088523.961 [IBIT] Loaded
2018-06-04T05:02:03.962Z,1528088523.962 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-06-04T05:02:03.965Z,1528088523.965 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-06-04T05:02:04.121Z,1528088524.121 [CBIT] Loaded
2018-06-04T05:02:04.122Z,1528088524.122 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-06-04T05:02:04.122Z,1528088524.122 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-06-04T05:02:04.123Z,1528088524.123 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-06-04T05:02:04.315Z,1528088524.315 [Aanderaa_O2] Loaded
2018-06-04T05:02:04.315Z,1528088524.315 [ComponentRegistry](DEBUG): SyncComponent "Aanderaa_O2" handled in the control thread.
2018-06-04T05:02:04.398Z,1528088524.398 [CTD_NeilBrown] Loaded
2018-06-04T05:02:04.398Z,1528088524.398 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2018-06-04T05:02:04.399Z,1528088524.399 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 409754E0
2018-06-04T05:02:04.399Z,1528088524.399 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 884
2018-06-04T05:02:04.448Z,1528088524.448 [CTD_Seabird] Loaded
2018-06-04T05:02:04.448Z,1528088524.448 [ComponentRegistry](DEBUG): Component "CTD_Seabird" handled in its own thread.
2018-06-04T05:02:04.449Z,1528088524.449 [CTD_Seabird ThreadHandler](DEBUG): Created PCaller Thread at 409A54E0
2018-06-04T05:02:04.450Z,1528088524.450 [CTD_Seabird ThreadHandler](INFO): Protected caller Thread ID is 885
2018-06-04T05:02:04.465Z,1528088524.465 [PAR_Licor] Loaded
2018-06-04T05:02:04.465Z,1528088524.465 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-06-04T05:02:04.517Z,1528088524.517 [WetLabsBB2FL] Loaded
2018-06-04T05:02:04.518Z,1528088524.518 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-06-04T05:02:04.519Z,1528088524.519 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 409D54E0
2018-06-04T05:02:04.519Z,1528088524.519 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 886
2018-06-04T05:02:04.520Z,1528088524.520 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-06-04T05:02:04.520Z,1528088524.520 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-06-04T05:02:04.611Z,1528088524.611 [VerticalControl](DEBUG): Construct VerticalControl.
2018-06-04T05:02:04.699Z,1528088524.699 [VerticalControl] Loaded
2018-06-04T05:02:04.700Z,1528088524.700 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-06-04T05:02:04.700Z,1528088524.700 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-06-04T05:02:04.761Z,1528088524.761 [HorizontalControl] Loaded
2018-06-04T05:02:04.761Z,1528088524.761 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-06-04T05:02:04.762Z,1528088524.762 [SpeedControl](DEBUG): Construct SpeedControl.
2018-06-04T05:02:04.763Z,1528088524.763 [SpeedControl] Loaded
2018-06-04T05:02:04.764Z,1528088524.764 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-06-04T05:02:04.764Z,1528088524.764 [LoopControl](DEBUG): Construct LoopControl.
2018-06-04T05:02:04.765Z,1528088524.765 [LoopControl] Loaded
2018-06-04T05:02:04.765Z,1528088524.765 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-06-04T05:02:04.766Z,1528088524.766 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-06-04T05:02:04.766Z,1528088524.766 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-06-04T05:02:04.804Z,1528088524.804 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-06-04T05:02:04.805Z,1528088524.805 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-06-04T05:02:04.917Z,1528088524.917 [DeadReckonUsingSpeedCalculator] Loaded
2018-06-04T05:02:04.918Z,1528088524.918 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-06-04T05:02:04.934Z,1528088524.934 [NavChart] Loaded
2018-06-04T05:02:04.935Z,1528088524.935 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-06-04T05:02:04.939Z,1528088524.939 [UniversalFixResidualReporter] Loaded
2018-06-04T05:02:04.939Z,1528088524.939 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-06-04T05:02:04.940Z,1528088524.940 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-06-04T05:02:04.943Z,1528088524.943 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-06-04T05:02:04.944Z,1528088524.944 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-06-04T05:02:04.951Z,1528088524.951 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-06-04T05:02:04.952Z,1528088524.952 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 40A614E0
2018-06-04T05:02:04.952Z,1528088524.952 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 887
2018-06-04T05:02:04.957Z,1528088524.957 [Supervisor](INFO): Main Thread ID is 796
2018-06-04T05:02:04.957Z,1528088524.957 [Supervisor](DEBUG): Running supervisor.
2018-06-04T05:02:04.958Z,1528088524.958 [CommandLine ThreadHandler](INFO): Handler Thread ID is 888
2018-06-04T05:02:04.960Z,1528088524.960 [controlThread ThreadHandler](INFO): Handler Thread ID is 889
2018-06-04T05:02:04.960Z,1528088524.960 [controlThread](DEBUG): Initializing ControlThread
2018-06-04T05:02:04.961Z,1528088524.961 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-06-04T05:02:04.962Z,1528088524.962 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-06-04T05:02:04.962Z,1528088524.962 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-06-04T05:02:04.963Z,1528088524.963 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-06-04T05:02:04.963Z,1528088524.963 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2018-06-04T05:02:04.964Z,1528088524.964 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-06-04T05:02:04.964Z,1528088524.964 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-06-04T05:02:04.971Z,1528088524.971 [SBIT](INFO): Initialize SBIT Component.
2018-06-04T05:02:04.972Z,1528088524.972 [SBIT](IMPORTANT): git: 2018-06-03
2018-06-04T05:02:04.972Z,1528088524.972 [SBIT](INFO): git hash: e89e4219fcae2edd415aee450018ea5d8b44159b
2018-06-04T05:02:04.973Z,1528088524.973 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2018-06-04T05:02:04.974Z,1528088524.974 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #639 PREEMPT Wed Mar 12 12:53:33 PDT 2014
Kernel Reported: #2 PREEMPT Thu Jan 11 20:13:48 PST 2018
2018-06-04T05:02:04.975Z,1528088524.975 [SBIT](INFO): Beginning SBIT in 23.000000 seconds.
2018-06-04T05:02:04.976Z,1528088524.976 [IBIT](INFO): Initialize IBIT Component.
2018-06-04T05:02:04.976Z,1528088524.976 [CBIT](DEBUG): Initialize CBIT Component.
2018-06-04T05:02:04.977Z,1528088524.977 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-06-04T05:02:04.978Z,1528088524.978 [logger ThreadHandler](INFO): Handler Thread ID is 890
2018-06-04T05:02:04.997Z,1528088524.997 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 891
2018-06-04T05:02:05.003Z,1528088525.003 [Radio_Surface](INFO): Powering up
2018-06-04T05:02:05.009Z,1528088525.009 [Rowe_600LCM ThreadHandler](INFO): Handler Thread ID is 892
2018-06-04T05:02:05.010Z,1528088525.010 [Rowe_600LCM](INFO): Initializing
2018-06-04T05:02:05.010Z,1528088525.010 [Rowe_600LCM](INFO): Checking LCM
2018-06-04T05:02:05.089Z,1528088525.089 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-06-04T05:02:05.091Z,1528088525.091 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-06-04T05:02:05.092Z,1528088525.092 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-06-04T05:02:05.092Z,1528088525.092 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-06-04T05:02:05.093Z,1528088525.093 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-06-04T05:02:05.094Z,1528088525.094 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-06-04T05:02:05.120Z,1528088525.120 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-06-04T05:02:05.120Z,1528088525.120 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-06-04T05:02:05.121Z,1528088525.121 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-06-04T05:02:05.122Z,1528088525.122 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-06-04T05:02:05.133Z,1528088525.133 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 893
2018-06-04T05:02:05.134Z,1528088525.134 [CTD_NeilBrown](INFO): Powering down
2018-06-04T05:02:05.153Z,1528088525.153 [CTD_Seabird ThreadHandler](INFO): Handler Thread ID is 894
2018-06-04T05:02:05.153Z,1528088525.153 [CTD_Seabird](INFO): Initializing
2018-06-04T05:02:05.159Z,1528088525.159 [CTD_Seabird](INFO): Checking LCM
2018-06-04T05:02:05.249Z,1528088525.249 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 895
2018-06-04T05:02:05.250Z,1528088525.250 [WetLabsBB2FL](INFO): Powering down
2018-06-04T05:02:05.285Z,1528088525.285 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 896
2018-06-04T05:02:05.291Z,1528088525.291 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-06-04T05:02:05.291Z,1528088525.291 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2018-06-04T05:02:05.292Z,1528088525.292 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-06-04T05:02:05.292Z,1528088525.292 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2018-06-04T05:02:05.292Z,1528088525.292 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-06-04T05:02:05.292Z,1528088525.292 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2018-06-04T05:02:05.293Z,1528088525.293 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-06-04T05:02:05.293Z,1528088525.293 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2018-06-04T05:02:05.293Z,1528088525.293 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-06-04T05:02:05.293Z,1528088525.293 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2018-06-04T05:02:05.294Z,1528088525.294 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-06-04T05:02:05.294Z,1528088525.294 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2018-06-04T05:02:05.294Z,1528088525.294 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-06-04T05:02:05.294Z,1528088525.294 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2018-06-04T05:02:05.294Z,1528088525.294 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-06-04T05:02:05.295Z,1528088525.295 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2018-06-04T05:02:05.321Z,1528088525.321 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-06-04T05:02:05.443Z,1528088525.443 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-06-04T05:02:05.445Z,1528088525.445 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-06-04T05:02:05.517Z,1528088525.517 [CTD_Seabird](INFO): LCM OK
2018-06-04T05:02:05.517Z,1528088525.517 [CTD_Seabird](INFO): Powering up
2018-06-04T05:02:05.526Z,1528088525.526 [Rowe_600LCM](INFO): LCM OK
2018-06-04T05:02:05.527Z,1528088525.527 [Rowe_600LCM](INFO): Powering up
2018-06-04T05:02:05.576Z,1528088525.576 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-06-04T05:02:05.577Z,1528088525.577 [Default:A.Wait](DEBUG): Construct Wait.
2018-06-04T05:02:05.579Z,1528088525.579 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-06-04T05:02:05.626Z,1528088525.626 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-06-04T05:02:05.629Z,1528088525.629 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-06-04T05:02:05.649Z,1528088525.649 [Default:E.Execute](DEBUG): Construct Execute.
2018-06-04T05:02:05.677Z,1528088525.677 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-06-04T05:02:05.688Z,1528088525.688 [controlThread](DEBUG): Component order: CycleStarter,DataOverHttps,Depth_Keller,DropWeight,NAL9602,Onboard,DAT,PNI_TCM,BPC1,Aanderaa_O2,PAR_Licor,Depth_Keller,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,ElevatorOffsetCalculator,StratificationFrontDetector,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-06-04T05:02:05.721Z,1528088525.721 [DataOverHttps](DEBUG): dashIP=134.89.2.23 starts with a digit so assuming it is a numeric IP
2018-06-04T05:02:05.734Z,1528088525.734 [Depth_Keller](ERROR): Pressure reading out of range: 1831.023193 decibar
2018-06-04T05:02:05.832Z,1528088525.832 [DAT](INFO): Powering up
2018-06-04T05:02:05.832Z,1528088525.832 [DAT](DEBUG): Initializing DAT.
2018-06-04T05:02:06.065Z,1528088526.065 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-06-04T05:02:06.177Z,1528088526.177 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-06-04T05:02:06.377Z,1528088526.377 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-06-04T05:02:06.385Z,1528088526.385 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-06-04T05:02:06.392Z,1528088526.392 [ElevatorServo](DEBUG): Initializing EZServoServo.
2018-06-04T05:02:06.401Z,1528088526.401 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-06-04T05:02:06.431Z,1528088526.431 [MassServo](DEBUG): Initializing EZServoServo.
2018-06-04T05:02:06.437Z,1528088526.437 [MassServo](DEBUG): Initializing MassServo.
2018-06-04T05:02:06.451Z,1528088526.451 [RudderServo](DEBUG): Initializing EZServoServo.
2018-06-04T05:02:06.457Z,1528088526.457 [RudderServo](DEBUG): Initializing RudderServo.
2018-06-04T05:02:06.479Z,1528088526.479 [ThrusterServo](DEBUG): Initializing EZServoServo.
2018-06-04T05:02:06.485Z,1528088526.485 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-06-04T05:02:06.787Z,1528088526.787 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-06-04T05:02:07.060Z,1528088527.060 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-06-04T05:02:07.570Z,1528088527.570 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-06-04T05:02:07.962Z,1528088527.962 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-06-04T05:02:08.389Z,1528088528.389 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-06-04T05:02:08.789Z,1528088528.789 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-06-04T05:02:09.269Z,1528088529.269 [Aanderaa_O2](INFO): Powering down
2018-06-04T05:02:09.468Z,1528088529.468 [Rowe_600LCM](INFO): Stopping potential previous instance(s) of Rowe LCM interface
2018-06-04T05:02:09.493Z,1528088529.493 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-06-04T05:02:09.652Z,1528088529.652 [Rowe_600LCM](INFO): Started Rowe LCM interface with command:nohup ./lrauv-framework/onboard/bin/roweadcp -ldir /mnt/mmc/LRAUV/Logs/latest/ -dev /dev/ttyB4 -b 9600 >& /dev/null &
2018-06-04T05:02:09.791Z,1528088529.791 [Rowe_600LCM](INFO): LCM subscribed to channel:Rowe_600LCM.adcp_dvl.bottom_track
2018-06-04T05:02:09.792Z,1528088529.792 [Rowe_600LCM](INFO): LCM subscribed to channel:Rowe_600LCM.adcp_dvl.vehicle_water_velocity
2018-06-04T05:02:09.807Z,1528088529.807 [Rowe_600LCM](INFO): LCM subscribed to channel:rowe_dvl.rowe
2018-06-04T05:02:10.836Z,1528088530.836 [CTD_Seabird](INFO): Stopping potential previous instance(s) of CTD_Seabird LCM interface
2018-06-04T05:02:11.028Z,1528088531.028 [CTD_Seabird](INFO): Started Seabird LCM interface with command:nohup ./lrauv-framework/onboard/bin/gpctd -ldir /mnt/mmc/LRAUV/Logs/latest/ -dev /dev/ttyC6 -b 9600 >& /dev/null &
2018-06-04T05:02:11.030Z,1528088531.030 [CTD_Seabird](INFO): LCM subscribed to channel:ctd_t.seabird-gpctd
2018-06-04T05:02:11.963Z,1528088531.963 [CTD_Seabird](INFO): Stopping potential previous instance(s) of CTD_Seabird LCM interface
2018-06-04T05:02:11.963Z,1528088531.963 [CTD_Seabird](INFO): Powering down
2018-06-04T05:02:18.900Z,1528088538.900 [DAT](INFO): setting local address to 2
2018-06-04T05:02:19.292Z,1528088539.292 [DAT](INFO): set local address to 2
2018-06-04T05:02:28.576Z,1528088548.576 [SBIT](IMPORTANT): Beginning Startup BIT
2018-06-04T05:02:28.596Z,1528088548.596 [CBIT](IMPORTANT): Beginning ground fault scan
2018-06-04T05:02:31.459Z,1528088551.459 [NAL9602](INFO): Powering up NAL9602
2018-06-04T05:02:39.283Z,1528088559.283 [CBIT](IMPORTANT): Ground fault detected
mA:
CHAN A0 (Batt): 4.657929
CHAN A1 (24V): -0.006981
CHAN A2 (12V): 4.697929
CHAN A3 (5V): -0.001371
CHAN B0 (3.3V): -0.000013
CHAN B1 (3.15aV): -0.000086
CHAN B2 (3.15bV): -0.000219
CHAN B3 (GND): 0.000362
OPEN: -0.000563
Full Scale Calc: 4.765 mA, -1.589 mA
2018-06-04T05:02:39.619Z,1528088559.619 [Rowe_600LCM](DEBUG): LCB error: Software Overcurrent.
2018-06-04T05:02:40.414Z,1528088560.414 [Rowe_600LCM](DEBUG): LCB error: Software Overcurrent.
2018-06-04T05:02:42.251Z,1528088562.251 [NAL9602](INFO): NAL9602 initialized
2018-06-04T05:03:21.969Z,1528088601.969 [SBIT](IMPORTANT): SBIT PASSED
2018-06-04T05:03:22.056Z,1528088602.056 [CommandLine](IMPORTANT): got command configSet list
2018-06-04T05:03:22.056Z,1528088602.056 [CommandLine](IMPORTANT): Listing configuration overrides from Data/persisted.cfg
2018-06-04T05:03:22.057Z,1528088602.057 [CommandLine](IMPORTANT): DAT.loadAtStartup=1 bool;

2018-06-04T05:03:22.356Z,1528088602.356 [MissionManager](IMPORTANT): Started mission Startup
2018-06-04T05:03:22.356Z,1528088602.356 [Startup] Running Loop=1
2018-06-04T05:03:22.356Z,1528088602.356 [Startup](DEBUG): Aggregate::initialize Startup
2018-06-04T05:03:22.356Z,1528088602.356 [Startup:A.GoToSurface] Running Loop=1
2018-06-04T05:03:22.356Z,1528088602.356 [Startup: