2018-05-17T16:22:31.322Z,1526574151.322 [Supervisor](DEBUG): Initializing supervisor.
2018-05-17T16:22:31.324Z,1526574151.324 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-05-17T16:22:31.325Z,1526574151.325 [SyncHandler](INFO): Protected caller Thread ID is 8819
2018-05-17T16:22:31.325Z,1526574151.325 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-05-17T16:22:31.326Z,1526574151.326 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-05-17T16:22:31.327Z,1526574151.327 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 8820
2018-05-17T16:22:31.329Z,1526574151.329 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-05-17T16:22:31.341Z,1526574151.341 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-05-17T16:22:31.342Z,1526574151.342 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-05-17T16:22:31.342Z,1526574151.342 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 8821
2018-05-17T16:22:31.343Z,1526574151.343 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-05-17T16:22:31.344Z,1526574151.344 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-05-17T16:22:31.344Z,1526574151.344 [logger ThreadHandler](INFO): Protected caller Thread ID is 8822
2018-05-17T16:22:31.346Z,1526574151.346 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-05-17T16:22:31.347Z,1526574151.347 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-05-17T16:22:31.348Z,1526574151.348 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-05-17T16:22:31.658Z,1526574151.658 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-05-17T16:22:31.659Z,1526574151.659 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-05-17T16:22:31.847Z,1526574151.847 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-05-17T16:22:31.847Z,1526574151.847 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-05-17T16:22:32.193Z,1526574152.193 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-05-17T16:22:32.194Z,1526574152.194 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-05-17T16:22:32.364Z,1526574152.364 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-05-17T16:22:32.365Z,1526574152.365 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-05-17T16:22:32.537Z,1526574152.537 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-05-17T16:22:32.538Z,1526574152.538 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-05-17T16:22:33.168Z,1526574153.168 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-05-17T16:22:33.169Z,1526574153.169 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-05-17T16:22:33.496Z,1526574153.496 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-05-17T16:22:33.496Z,1526574153.496 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-05-17T16:22:33.916Z,1526574153.916 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-05-17T16:22:33.917Z,1526574153.917 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-05-17T16:22:34.020Z,1526574154.020 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-05-17T16:22:34.020Z,1526574154.020 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-05-17T16:22:34.116Z,1526574154.116 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-05-17T16:22:34.117Z,1526574154.117 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-05-17T16:22:34.318Z,1526574154.318 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-05-17T16:22:34.319Z,1526574154.319 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-05-17T16:22:34.520Z,1526574154.520 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-05-17T16:22:34.521Z,1526574154.521 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-05-17T16:22:34.840Z,1526574154.840 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-05-17T16:22:34.841Z,1526574154.841 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-05-17T16:22:34.975Z,1526574154.975 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-05-17T16:22:34.976Z,1526574154.976 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-05-17T16:22:35.057Z,1526574155.057 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-daphne/
2018-05-17T16:22:35.058Z,1526574155.058 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Control.cfg
2018-05-17T16:22:35.158Z,1526574155.158 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/logger.cfg
2018-05-17T16:22:35.248Z,1526574155.248 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Servo.cfg
2018-05-17T16:22:35.340Z,1526574155.340 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Simulator.cfg
2018-05-17T16:22:35.425Z,1526574155.425 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Sensor.cfg
2018-05-17T16:22:35.570Z,1526574155.570 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/vehicle.cfg
2018-05-17T16:22:35.740Z,1526574155.740 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/workSite.cfg
2018-05-17T16:22:35.814Z,1526574155.814 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Battery.cfg
2018-05-17T16:22:36.038Z,1526574156.038 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2018-05-17T16:22:36.039Z,1526574156.039 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/secure.cfg
2018-05-17T16:22:36.120Z,1526574156.120 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Navigation.cfg
2018-05-17T16:22:36.208Z,1526574156.208 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/BIT.cfg
2018-05-17T16:22:36.304Z,1526574156.304 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Science.cfg
2018-05-17T16:22:36.424Z,1526574156.424 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-daphne/root/
2018-05-17T16:22:36.425Z,1526574156.425 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2018-05-17T16:22:36.428Z,1526574156.428 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-05-17T16:22:36.662Z,1526574156.662 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-05-17T16:22:36.662Z,1526574156.662 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-05-17T16:22:36.705Z,1526574156.705 [DepthRateCalculator] Loaded
2018-05-17T16:22:36.705Z,1526574156.705 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-05-17T16:22:36.711Z,1526574156.711 [PitchRateCalculator] Loaded
2018-05-17T16:22:36.711Z,1526574156.711 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-05-17T16:22:36.727Z,1526574156.727 [SpeedCalculator] Loaded
2018-05-17T16:22:36.727Z,1526574156.727 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-05-17T16:22:36.748Z,1526574156.748 [TempGradientCalculator] Loaded
2018-05-17T16:22:36.748Z,1526574156.748 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-05-17T16:22:36.763Z,1526574156.763 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2018-05-17T16:22:36.764Z,1526574156.764 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2018-05-17T16:22:36.769Z,1526574156.769 [YawRateCalculator] Loaded
2018-05-17T16:22:36.769Z,1526574156.769 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-05-17T16:22:36.809Z,1526574156.809 [ElevatorOffsetCalculator] Loaded
2018-05-17T16:22:36.809Z,1526574156.809 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-05-17T16:22:36.810Z,1526574156.810 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-05-17T16:22:36.811Z,1526574156.811 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-05-17T16:22:36.894Z,1526574156.894 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2018-05-17T16:22:36.894Z,1526574156.894 [StratificationFrontDetector](DEBUG): (re)initializing
2018-05-17T16:22:36.894Z,1526574156.894 [StratificationFrontDetector] Loaded
2018-05-17T16:22:36.895Z,1526574156.895 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2018-05-17T16:22:36.895Z,1526574156.895 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-05-17T16:22:36.896Z,1526574156.896 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-05-17T16:22:37.003Z,1526574157.003 [BuoyancyServo] Loaded
2018-05-17T16:22:37.004Z,1526574157.004 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-05-17T16:22:37.018Z,1526574157.018 [ElevatorServo] Loaded
2018-05-17T16:22:37.018Z,1526574157.018 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-05-17T16:22:37.033Z,1526574157.033 [MassServo] Loaded
2018-05-17T16:22:37.033Z,1526574157.033 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-05-17T16:22:37.048Z,1526574157.048 [RudderServo] Loaded
2018-05-17T16:22:37.048Z,1526574157.048 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-05-17T16:22:37.062Z,1526574157.062 [ThrusterServo] Loaded
2018-05-17T16:22:37.062Z,1526574157.062 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-05-17T16:22:37.062Z,1526574157.062 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-05-17T16:22:37.063Z,1526574157.063 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-05-17T16:22:37.076Z,1526574157.076 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-05-17T16:22:37.076Z,1526574157.076 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-05-17T16:22:37.177Z,1526574157.177 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-05-17T16:22:37.178Z,1526574157.178 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-05-17T16:22:37.385Z,1526574157.385 [Module Loader](CRITICAL): Could not find element AHRS_M2.loadAtStartup
2018-05-17T16:22:37.455Z,1526574157.455 [DataOverHttps] Loaded
2018-05-17T16:22:37.455Z,1526574157.455 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2018-05-17T16:22:37.469Z,1526574157.469 [Depth_Keller] Loaded
2018-05-17T16:22:37.469Z,1526574157.469 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2018-05-17T16:22:37.474Z,1526574157.474 [DropWeight] Loaded
2018-05-17T16:22:37.475Z,1526574157.475 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2018-05-17T16:22:37.475Z,1526574157.475 [Module Loader](CRITICAL): Could not find element GobyModem.loadAtStartup
2018-05-17T16:22:37.571Z,1526574157.571 [NAL9602] Loaded
2018-05-17T16:22:37.571Z,1526574157.571 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2018-05-17T16:22:37.587Z,1526574157.587 [Onboard] Loaded
2018-05-17T16:22:37.587Z,1526574157.587 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2018-05-17T16:22:37.597Z,1526574157.597 [Radio_Surface] Loaded
2018-05-17T16:22:37.597Z,1526574157.597 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2018-05-17T16:22:37.598Z,1526574157.598 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408844E0
2018-05-17T16:22:37.598Z,1526574157.598 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 8904
2018-05-17T16:22:37.644Z,1526574157.644 [PNI_TCM] Loaded
2018-05-17T16:22:37.644Z,1526574157.644 [ComponentRegistry](DEBUG): SyncComponent "PNI_TCM" handled in the control thread.
2018-05-17T16:22:39.793Z,1526574159.793 [BPC1] Loaded
2018-05-17T16:22:39.794Z,1526574159.794 [ComponentRegistry](DEBUG): SyncComponent "BPC1" handled in the control thread.
2018-05-17T16:22:39.794Z,1526574159.794 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2018-05-17T16:22:39.795Z,1526574159.795 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-05-17T16:22:39.919Z,1526574159.919 [SBIT](DEBUG): Construct Startup Built In Test.
2018-05-17T16:22:39.940Z,1526574159.940 [SBIT] Loaded
2018-05-17T16:22:39.941Z,1526574159.941 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-05-17T16:22:39.941Z,1526574159.941 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-05-17T16:22:39.952Z,1526574159.952 [IBIT] Loaded
2018-05-17T16:22:39.953Z,1526574159.953 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-05-17T16:22:39.956Z,1526574159.956 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-05-17T16:22:40.102Z,1526574160.102 [CBIT] Loaded
2018-05-17T16:22:40.103Z,1526574160.103 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-05-17T16:22:40.103Z,1526574160.103 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-05-17T16:22:40.104Z,1526574160.104 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-05-17T16:22:40.245Z,1526574160.245 [Aanderaa_O2] Loaded
2018-05-17T16:22:40.246Z,1526574160.246 [ComponentRegistry](DEBUG): SyncComponent "Aanderaa_O2" handled in the control thread.
2018-05-17T16:22:40.257Z,1526574160.257 [CANONSampler] Loaded
2018-05-17T16:22:40.258Z,1526574160.258 [ComponentRegistry](DEBUG): SyncComponent "CANONSampler" handled in the control thread.
2018-05-17T16:22:40.334Z,1526574160.334 [CTD_NeilBrown] Loaded
2018-05-17T16:22:40.335Z,1526574160.335 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2018-05-17T16:22:40.336Z,1526574160.336 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 409444E0
2018-05-17T16:22:40.336Z,1526574160.336 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 8905
2018-05-17T16:22:40.381Z,1526574160.381 [CTD_Seabird] Loaded
2018-05-17T16:22:40.381Z,1526574160.381 [ComponentRegistry](DEBUG): Component "CTD_Seabird" handled in its own thread.
2018-05-17T16:22:40.383Z,1526574160.383 [CTD_Seabird ThreadHandler](DEBUG): Created PCaller Thread at 409744E0
2018-05-17T16:22:40.383Z,1526574160.383 [CTD_Seabird ThreadHandler](INFO): Protected caller Thread ID is 8906
2018-05-17T16:22:40.397Z,1526574160.397 [PAR_Licor] Loaded
2018-05-17T16:22:40.397Z,1526574160.397 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-05-17T16:22:40.446Z,1526574160.446 [WetLabsBB2FL] Loaded
2018-05-17T16:22:40.446Z,1526574160.446 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-05-17T16:22:40.447Z,1526574160.447 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 409A44E0
2018-05-17T16:22:40.448Z,1526574160.448 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 8907
2018-05-17T16:22:40.448Z,1526574160.448 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-05-17T16:22:40.449Z,1526574160.449 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-05-17T16:22:40.514Z,1526574160.514 [VerticalControl](DEBUG): Construct VerticalControl.
2018-05-17T16:22:40.597Z,1526574160.597 [VerticalControl] Loaded
2018-05-17T16:22:40.597Z,1526574160.597 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-05-17T16:22:40.598Z,1526574160.598 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-05-17T16:22:40.654Z,1526574160.654 [HorizontalControl] Loaded
2018-05-17T16:22:40.654Z,1526574160.654 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-05-17T16:22:40.655Z,1526574160.655 [SpeedControl](DEBUG): Construct SpeedControl.
2018-05-17T16:22:40.656Z,1526574160.656 [SpeedControl] Loaded
2018-05-17T16:22:40.657Z,1526574160.657 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-05-17T16:22:40.657Z,1526574160.657 [LoopControl](DEBUG): Construct LoopControl.
2018-05-17T16:22:40.658Z,1526574160.658 [LoopControl] Loaded
2018-05-17T16:22:40.658Z,1526574160.658 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-05-17T16:22:40.659Z,1526574160.659 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-05-17T16:22:40.659Z,1526574160.659 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-05-17T16:22:40.683Z,1526574160.683 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-05-17T16:22:40.684Z,1526574160.684 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-05-17T16:22:40.773Z,1526574160.773 [DeadReckonUsingSpeedCalculator] Loaded
2018-05-17T16:22:40.773Z,1526574160.773 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-05-17T16:22:40.828Z,1526574160.828 [DeadReckonWithRespectToSeafloor] Loaded
2018-05-17T16:22:40.829Z,1526574160.829 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonWithRespectToSeafloor" handled in the control thread.
2018-05-17T16:22:40.844Z,1526574160.844 [NavChart] Loaded
2018-05-17T16:22:40.845Z,1526574160.845 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-05-17T16:22:40.849Z,1526574160.849 [UniversalFixResidualReporter] Loaded
2018-05-17T16:22:40.849Z,1526574160.849 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-05-17T16:22:40.849Z,1526574160.849 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-05-17T16:22:40.853Z,1526574160.853 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-05-17T16:22:40.854Z,1526574160.854 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-05-17T16:22:40.861Z,1526574160.861 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-05-17T16:22:40.862Z,1526574160.862 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 40A304E0
2018-05-17T16:22:40.862Z,1526574160.862 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 8908
2018-05-17T16:22:40.867Z,1526574160.867 [Supervisor](INFO): Main Thread ID is 8514
2018-05-17T16:22:40.867Z,1526574160.867 [Supervisor](DEBUG): Running supervisor.
2018-05-17T16:22:40.868Z,1526574160.868 [CommandLine ThreadHandler](INFO): Handler Thread ID is 8909
2018-05-17T16:22:40.870Z,1526574160.870 [controlThread ThreadHandler](INFO): Handler Thread ID is 8910
2018-05-17T16:22:40.871Z,1526574160.871 [controlThread](DEBUG): Initializing ControlThread
2018-05-17T16:22:40.871Z,1526574160.871 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-05-17T16:22:40.872Z,1526574160.872 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-05-17T16:22:40.872Z,1526574160.872 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-05-17T16:22:40.872Z,1526574160.872 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-05-17T16:22:40.873Z,1526574160.873 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2018-05-17T16:22:40.874Z,1526574160.874 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-05-17T16:22:40.874Z,1526574160.874 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-05-17T16:22:40.881Z,1526574160.881 [SBIT](INFO): Initialize SBIT Component.
2018-05-17T16:22:40.881Z,1526574160.881 [SBIT](IMPORTANT): git: 2018-03-26-70-gf564a3b
2018-05-17T16:22:40.882Z,1526574160.882 [SBIT](INFO): git hash: f564a3bc58329a2b76cea2ca9c8813404f43c181
2018-05-17T16:22:40.882Z,1526574160.882 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2018-05-17T16:22:40.883Z,1526574160.883 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #639 PREEMPT Wed Mar 12 12:53:33 PDT 2014
Kernel Reported: #2 PREEMPT Thu Jan 11 20:13:48 PST 2018
2018-05-17T16:22:40.884Z,1526574160.884 [SBIT](INFO): Beginning SBIT in 23.000000 seconds.
2018-05-17T16:22:40.885Z,1526574160.885 [IBIT](INFO): Initialize IBIT Component.
2018-05-17T16:22:40.885Z,1526574160.885 [CBIT](DEBUG): Initialize CBIT Component.
2018-05-17T16:22:40.886Z,1526574160.886 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-05-17T16:22:40.887Z,1526574160.887 [logger ThreadHandler](INFO): Handler Thread ID is 8911
2018-05-17T16:22:40.907Z,1526574160.907 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 8912
2018-05-17T16:22:40.913Z,1526574160.913 [Radio_Surface](INFO): Powering up
2018-05-17T16:22:40.919Z,1526574160.919 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 8913
2018-05-17T16:22:40.920Z,1526574160.920 [CTD_NeilBrown](INFO): Powering down
2018-05-17T16:22:40.943Z,1526574160.943 [CTD_Seabird ThreadHandler](INFO): Handler Thread ID is 8914
2018-05-17T16:22:40.943Z,1526574160.943 [CTD_Seabird](INFO): Initializing
2018-05-17T16:22:40.946Z,1526574160.946 [CTD_Seabird](INFO): Checking LCM
2018-05-17T16:22:40.964Z,1526574160.964 [CTD_Seabird](INFO): LCM OK
2018-05-17T16:22:40.965Z,1526574160.965 [CTD_Seabird](INFO): Powering up
2018-05-17T16:22:40.967Z,1526574160.967 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 8915
2018-05-17T16:22:40.968Z,1526574160.968 [WetLabsBB2FL](INFO): Powering down
2018-05-17T16:22:40.995Z,1526574160.995 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-05-17T16:22:40.996Z,1526574160.996 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-05-17T16:22:40.997Z,1526574160.997 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-05-17T16:22:40.998Z,1526574160.998 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-05-17T16:22:40.998Z,1526574160.998 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-05-17T16:22:40.999Z,1526574160.999 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-05-17T16:22:40.999Z,1526574160.999 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-05-17T16:22:40.000Z,1526574161.000 [DeadReckonWithRespectToSeafloor](DEBUG): Initializing DeadReckonWithRespectToSeafloor component.
2018-05-17T16:22:41.000Z,1526574161.000 [DeadReckonWithRespectToSeafloor](INFO): Will consider orientation measurement stale after 120s.
2018-05-17T16:22:41.001Z,1526574161.001 [DeadReckonWithRespectToSeafloor](INFO): Will consider velocity measurement stale after 20s.
2018-05-17T16:22:41.001Z,1526574161.001 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-05-17T16:22:41.001Z,1526574161.001 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-05-17T16:22:41.002Z,1526574161.002 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-05-17T16:22:41.011Z,1526574161.011 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 8916
2018-05-17T16:22:41.014Z,1526574161.014 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-05-17T16:22:41.014Z,1526574161.014 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2018-05-17T16:22:41.015Z,1526574161.015 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-05-17T16:22:41.015Z,1526574161.015 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2018-05-17T16:22:41.015Z,1526574161.015 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-05-17T16:22:41.015Z,1526574161.015 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2018-05-17T16:22:41.016Z,1526574161.016 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-05-17T16:22:41.016Z,1526574161.016 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2018-05-17T16:22:41.016Z,1526574161.016 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-05-17T16:22:41.016Z,1526574161.016 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2018-05-17T16:22:41.016Z,1526574161.016 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-05-17T16:22:41.016Z,1526574161.016 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2018-05-17T16:22:41.017Z,1526574161.017 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-05-17T16:22:41.017Z,1526574161.017 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2018-05-17T16:22:41.017Z,1526574161.017 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-05-17T16:22:41.017Z,1526574161.017 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2018-05-17T16:22:41.062Z,1526574161.062 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-05-17T16:22:41.093Z,1526574161.093 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-05-17T16:22:41.093Z,1526574161.093 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-05-17T16:22:41.184Z,1526574161.184 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-05-17T16:22:41.185Z,1526574161.185 [Default:A.Wait](DEBUG): Construct Wait.
2018-05-17T16:22:41.187Z,1526574161.187 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-05-17T16:22:41.214Z,1526574161.214 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-05-17T16:22:41.236Z,1526574161.236 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-05-17T16:22:41.242Z,1526574161.242 [Default:E.Execute](DEBUG): Construct Execute.
2018-05-17T16:22:41.279Z,1526574161.279 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-05-17T16:22:41.284Z,1526574161.284 [controlThread](DEBUG): Component order: CycleStarter,DataOverHttps,Depth_Keller,DropWeight,NAL9602,Onboard,PNI_TCM,BPC1,Aanderaa_O2,CANONSampler,PAR_Licor,Depth_Keller,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,ElevatorOffsetCalculator,StratificationFrontDetector,DeadReckonUsingSpeedCalculator,DeadReckonWithRespectToSeafloor,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-05-17T16:22:41.309Z,1526574161.309 [DataOverHttps](DEBUG): dashIP=134.89.2.23 starts with a digit so assuming it is a numeric IP
2018-05-17T16:22:41.333Z,1526574161.333 [Depth_Keller](ERROR): Pressure reading out of range: 1831.023193 decibar
2018-05-17T16:22:41.592Z,1526574161.592 [CANONSampler](INFO): Powering down
2018-05-17T16:22:41.776Z,1526574161.776 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-05-17T16:22:41.868Z,1526574161.868 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:41.891Z,1526574161.891 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:41.987Z,1526574161.987 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-05-17T16:22:41.995Z,1526574161.995 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-05-17T16:22:42.017Z,1526574162.017 [ElevatorServo](DEBUG): Initializing EZServoServo.
2018-05-17T16:22:42.023Z,1526574162.023 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-05-17T16:22:42.037Z,1526574162.037 [MassServo](DEBUG): Initializing EZServoServo.
2018-05-17T16:22:42.043Z,1526574162.043 [MassServo](DEBUG): Initializing MassServo.
2018-05-17T16:22:42.049Z,1526574162.049 [RudderServo](DEBUG): Initializing EZServoServo.
2018-05-17T16:22:42.055Z,1526574162.055 [RudderServo](DEBUG): Initializing RudderServo.
2018-05-17T16:22:42.068Z,1526574162.068 [ThrusterServo](DEBUG): Initializing EZServoServo.
2018-05-17T16:22:42.075Z,1526574162.075 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-05-17T16:22:42.115Z,1526574162.115 [CommandLine](FAULT): Scheduling is paused
2018-05-17T16:22:42.116Z,1526574162.116 [CBIT](INFO): Critical error at 20180517T162237
2018-05-17T16:22:42.116Z,1526574162.116 [Supervisor](INFO): Stop Mission called by CBIT::checkCriticals
2018-05-17T16:22:42.300Z,1526574162.300 [DropWeight](CRITICAL): DROP WEIGHT MISSING.

2018-05-17T16:22:42.300Z,1526574162.300 [DropWeight] Hardware Fault, FailCount= 1
2018-05-17T16:22:42.301Z,1526574162.301 [DropWeight](ERROR): Hardware Fault
2018-05-17T16:22:42.359Z,1526574162.359 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:42.360Z,1526574162.360 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:42.383Z,1526574162.383 [CBIT](INFO): Critical error at 20180517T162242
2018-05-17T16:22:42.386Z,1526574162.386 [CBIT](ERROR): Hardware Fault in component: DropWeight
2018-05-17T16:22:42.387Z,1526574162.387 [CBIT](CRITICAL): Hardware Fault in component: DropWeight
2018-05-17T16:22:42.632Z,1526574162.632 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:42.633Z,1526574162.633 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:43.028Z,1526574163.028 [CBIT](INFO): Critical error at 20180517T162242
2018-05-17T16:22:43.073Z,1526574163.073 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:43.074Z,1526574163.074 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:43.536Z,1526574163.536 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:43.536Z,1526574163.536 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:43.894Z,1526574163.894 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:43.903Z,1526574163.903 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:44.290Z,1526574164.290 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:44.299Z,1526574164.299 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:44.791Z,1526574164.791 [Aanderaa_O2](INFO): Powering down
2018-05-17T16:22:44.890Z,1526574164.890 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:44.898Z,1526574164.898 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:22:46.515Z,1526574166.515 [CTD_Seabird](INFO): Stopping potential previous instance(s) of CTD_Seabird LCM interface
2018-05-17T16:22:46.606Z,1526574166.606 [CTD_Seabird](INFO): Started Seabird LCM interface with command:nohup ./lrauv-framework/onboard/bin/gpctd -ldir /mnt/mmc/LRAUV/Logs/latest/ -dev /dev/ttyC6 -b 9600 >& /dev/null &
2018-05-17T16:22:46.652Z,1526574166.652 [CTD_Seabird](INFO): LCM subscribed to channel:ctd_t.seabird-gpctd
2018-05-17T16:22:47.101Z,1526574167.101 [CTD_Seabird](INFO): Stopping potential previous instance(s) of CTD_Seabird LCM interface
2018-05-17T16:22:47.101Z,1526574167.101 [CTD_Seabird](INFO): Powering down
2018-05-17T16:23:04.398Z,1526574184.398 [SBIT](IMPORTANT): Beginning Startup BIT
2018-05-17T16:23:04.419Z,1526574184.419 [CBIT](IMPORTANT): Beginning ground fault scan
2018-05-17T16:23:07.660Z,1526574187.660 [NAL9602](INFO): Powering up NAL9602
2018-05-17T16:23:15.369Z,1526574195.369 [CBIT](IMPORTANT): No ground fault detected
mA:
CHAN A0 (Batt): -0.001803
CHAN A1 (24V): -0.006710
CHAN A2 (12V): -0.001888
CHAN A3 (5V): -0.001101
CHAN B0 (3.3V): 0.000101
CHAN B1 (3.15aV): -0.000410
CHAN B2 (3.15bV): 0.000267
CHAN B3 (GND): 0.000349
OPEN: -0.000204
Full Scale Calc: 4.765 mA, -1.589 mA
2018-05-17T16:23:18.856Z,1526574198.856 [NAL9602](INFO): NAL9602 initialized
2018-05-17T16:23:58.468Z,1526574238.468 [SBIT](IMPORTANT): SBIT PASSED
2018-05-17T16:23:58.515Z,1526574238.515 [CommandLine](IMPORTANT): got command configSet list
2018-05-17T16:23:58.516Z,1526574238.516 [CommandLine](IMPORTANT): Listing configuration overrides from Data/persisted.cfg
2018-05-17T16:23:58.516Z,1526574238.516 [CommandLine](IMPORTANT): Rowe_600LCM.loadAtStartup=0 bool;

2018-05-17T16:23:58.864Z,1526574238.864 [MissionManager](IMPORTANT): Started mission Startup
2018-05-17T16:23:58.865Z,1526574238.865 [Startup] Running Loop=1
2018-05-17T16:23:58.865Z,1526574238.865 [Startup](DEBUG): Aggregate::initialize Startup
2018-05-17T16:23:58.865Z,1526574238.865 [Startup:A.GoToSurface] Running Loop=1
2018-05-17T16:23:58.865Z,1526574238.865 [Startup:A.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2018-05-17T16:23:58.866Z,1526574238.866 [Startup:A.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2018-05-17T16:23:58.866Z,1526574238.866 [Startup:A.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2018-05-17T16:23:58.867Z,1526574238.867 [Startup:A.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2018-05-17T16:23:58.867Z,1526574238.867 [Startup:A.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2018-05-17T16:23:58.867Z,1526574238.867 [Startup:A.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2018-05-17T16:23:58.873Z,1526574238.873 [Startup:StartupSatComms] Running Loop=1
2018-05-17T16:23:58.874Z,1526574238.874 [Startup:StartupSatComms](DEBUG): Aggregate::initialize Startup:StartupSatComms
2018-05-17T16:23:58.874Z,1526574238.874 [Startup:StartupSatComms:A] Running Loop=1
2018-05-17T16:23:59.238Z,1526574239.238 [Startup:StartupSatComms:A](DEBUG): Initialize ReadDataComponent to sense latitude_fix
2018-05-17T16:24:59.242Z,1526574299.242 [Startup:StartupSatComms:A](INFO): Timed out from 2018-05-17T16:23:58.9Z
2018-05-17T16:24:59.242Z,1526574299.242 [Startup:StartupSatComms:A] Stopped
2018-05-17T16:24:59.246Z,1526574299.246 [Startup:StartupSatComms:B] Running Loop=1
2018-05-17T16:24:59.637Z,1526574299.637 [Startup:StartupSatComms:B](DEBUG): Initialize ReadDataComponent to sense platform_communications
2018-05-17T16:25:41.232Z,1526574341.232 [DeadReckonUsingSpeedCalculator](ERROR): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan
2018-05-17T16:25:41.232Z,1526574341.232 [DeadReckonUsingSpeedCalculator] Software Fault, FailCount= 1
2018-05-17T16:25:41.232Z,1526574341.232 [DeadReckonUsingSpeedCalculator](ERROR): Software Fault
2018-05-17T16:25:41.233Z,1526574341.233 [DeadReckonWithRespectToSeafloor](ERROR): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan
2018-05-17T16:25:41.234Z,1526574341.234 [DeadReckonWithRespectToSeafloor] Software Fault, FailCount= 1
2018-05-17T16:25:41.234Z,1526574341.234 [DeadReckonWithRespectToSeafloor](ERROR): Software Fault
2018-05-17T16:25:41.262Z,1526574341.262 [CBIT](ERROR): Software Fault in component: DeadReckonUsingSpeedCalculator
2018-05-17T16:25:41.266Z,1526574341.266 [CBIT](ERROR): Software Fault in component: DeadReckonWithRespectToSeafloor
2018-05-17T16:25:41.676Z,1526574341.676 [CBIT](INFO): Clearing failed state for component DeadReckonUsingSpeedCalculator
2018-05-17T16:25:41.676Z,1526574341.676 [DeadReckonUsingSpeedCalculator] No Fault, FailCount= 1
2018-05-17T16:25:41.677Z,1526574341.677 [CBIT](INFO): Clearing failed state for component DeadReckonWithRespectToSeafloor
2018-05-17T16:25:41.677Z,1526574341.677 [DeadReckonWithRespectToSeafloor] No Fault, FailCount= 1
2018-05-17T16:25:42.069Z,1526574342.069 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-05-17T16:25:42.070Z,1526574342.070 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-05-17T16:25:42.070Z,1526574342.070 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-05-17T16:25:42.070Z,1526574342.070 [DeadReckonWithRespectToSeafloor](DEBUG): Initializing DeadReckonWithRespectToSeafloor component.
2018-05-17T16:25:42.071Z,1526574342.071 [DeadReckonWithRespectToSeafloor](INFO): Will consider orientation measurement stale after 120s.
2018-05-17T16:25:42.071Z,1526574342.071 [DeadReckonWithRespectToSeafloor](INFO): Will consider velocity measurement stale after 20s.
2018-05-17T16:25:46.410Z,1526574346.410 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.007094
2018-05-17T16:25:50.419Z,1526574350.419 [DataOverHttps](INFO): Sending 25 bytes from file Logs/20180517T161723/Courier0004.lzma
2018-05-17T16:25:51.220Z,1526574351.220 [DataOverHttps](INFO): Moved sent file to Logs/20180517T161723/Courier0004.lzma.bak
2018-05-17T16:25:51.220Z,1526574351.220 [DataOverHttps](INFO): SBD MOMSN=8283047
2018-05-17T16:26:00.016Z,1526574360.016 [Startup:StartupSatComms:B](INFO): Timed out from 2018-05-17T16:24:59.2Z
2018-05-17T16:26:00.016Z,1526574360.016 [Startup:StartupSatComms:B] Stopped
2018-05-17T16:26:00.016Z,1526574360.016 [Startup:StartupSatComms](INFO): Completed Startup:StartupSatComms
2018-05-17T16:26:00.016Z,1526574360.016 [Startup:StartupSatComms] Stopped
2018-05-17T16:26:00.016Z,1526574360.016 [Startup:StartupSatComms](DEBUG): Aggregate::uninitialize Startup:StartupSatComms
2018-05-17T16:26:00.017Z,1526574360.017 [Startup](INFO): Completed Startup
2018-05-17T16:26:00.017Z,1526574360.017 [MissionManager](INFO): Startup is completed.
2018-05-17T16:26:00.017Z,1526574360.017 [MissionManager](INFO): Uninitializing Mission Startup
2018-05-17T16:26:00.017Z,1526574360.017 [Startup] Stopped
2018-05-17T16:26:00.018Z,1526574360.018 [Startup](DEBUG): Aggregate::uninitialize Startup
2018-05-17T16:26:00.018Z,1526574360.018 [Startup:A.GoToSurface] Stopped
2018-05-17T16:26:00.018Z,1526574360.018 [Startup:A.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2018-05-17T16:26:00.038Z,1526574360.038 [DataOverHttps](INFO): Sending 216 bytes from file Logs/20180517T162231/Courier0000.lzma
2018-05-17T16:26:00.143Z,1526574360.143 [MissionManager](IMPORTANT): Started mission Default
2018-05-17T16:26:00.144Z,1526574360.144 [Default] Running Loop=1
2018-05-17T16:26:00.144Z,1526574360.144 [Default](DEBUG): Aggregate::initialize Default
2018-05-17T16:26:00.144Z,1526574360.144 [Default:B.GoToSurface] Running Loop=1
2018-05-17T16:26:00.144Z,1526574360.144 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2018-05-17T16:26:00.144Z,1526574360.144 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2018-05-17T16:26:00.145Z,1526574360.145 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2018-05-17T16:26:00.145Z,1526574360.145 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2018-05-17T16:26:00.145Z,1526574360.145 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2018-05-17T16:26:00.146Z,1526574360.146 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2018-05-17T16:26:00.146Z,1526574360.146 [Default:A.Wait] Running Loop=1
2018-05-17T16:26:00.146Z,1526574360.146 [Default:A.Wait](DEBUG): Initialize Wait Component.
2018-05-17T16:26:00.839Z,1526574360.839 [DataOverHttps](INFO): Moved sent file to Logs/20180517T162231/Courier0000.lzma.bak
2018-05-17T16:26:00.840Z,1526574360.840 [DataOverHttps](INFO): SBD MOMSN=8283049
2018-05-17T16:26:13.276Z,1526574373.276 [Default:A.Wait](INFO): Done Waiting.
2018-05-17T16:26:13.276Z,1526574373.276 [Default:A.Wait] Stopped
2018-05-17T16:26:13.276Z,1526574373.276 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2018-05-17T16:26:13.676Z,1526574373.676 [Default:CheckIn] Running Loop=1
2018-05-17T16:26:13.676Z,1526574373.676 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2018-05-17T16:26:13.676Z,1526574373.676 [Default:CheckIn:Read_GPS] Running Loop=1
2018-05-17T16:26:14.076Z,1526574374.076 [Default:CheckIn:Read_GPS](DEBUG): Initialize ReadDataComponent to sense time_fix
2018-05-17T16:27:06.508Z,1526574426.508 [CommandLine](IMPORTANT): got command restart application
2018-05-17T16:27:07.517Z,1526574427.517 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:27:07.518Z,1526574427.518 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:07.594Z,1526574427.594 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2018-05-17T16:27:07.594Z,1526574427.594 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:07.595Z,1526574427.595 [CommandLine](INFO): Join timeout helper Thread ID is 8943
2018-05-17T16:27:07.596Z,1526574427.596 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2018-05-17T16:27:07.596Z,1526574427.596 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:07.596Z,1526574427.596 [NavChartDb](INFO): Join timeout helper Thread ID is 8944
2018-05-17T16:27:07.979Z,1526574427.979 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:27:07.979Z,1526574427.979 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:07.994Z,1526574427.994 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2018-05-17T16:27:07.994Z,1526574427.994 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:07.995Z,1526574427.995 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 8945
2018-05-17T16:27:07.999Z,1526574427.999 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:27:07.999Z,1526574427.999 [WetLabsBB2FL](INFO): Powering down
2018-05-17T16:27:07.000Z,1526574428.000 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:08.014Z,1526574428.014 [ComponentRegistry](INFO): Shutting down CTD_Seabird ThreadHandler
2018-05-17T16:27:08.014Z,1526574428.014 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:08.015Z,1526574428.015 [CTD_Seabird](INFO): Join timeout helper Thread ID is 8946
2018-05-17T16:27:08.219Z,1526574428.219 [CTD_Seabird ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:27:08.302Z,1526574428.302 [CTD_Seabird](INFO): Stopping potential previous instance(s) of CTD_Seabird LCM interface
2018-05-17T16:27:08.303Z,1526574428.303 [CTD_Seabird](INFO): Powering down
2018-05-17T16:27:08.304Z,1526574428.304 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:08.311Z,1526574428.311 [ComponentRegistry](INFO): Shutting down CTD_NeilBrown ThreadHandler
2018-05-17T16:27:08.311Z,1526574428.311 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:08.311Z,1526574428.311 [CTD_NeilBrown](INFO): Join timeout helper Thread ID is 8948
2018-05-17T16:27:08.512Z,1526574428.512 [CTD_NeilBrown ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:27:08.512Z,1526574428.512 [CTD_NeilBrown](INFO): Powering down
2018-05-17T16:27:08.513Z,1526574428.513 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:08.535Z,1526574428.535 [ComponentRegistry](INFO): Shutting down Radio_Surface ThreadHandler
2018-05-17T16:27:08.536Z,1526574428.536 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:08.536Z,1526574428.536 [Radio_Surface](INFO): Join timeout helper Thread ID is 8949
2018-05-17T16:27:08.915Z,1526574428.915 [Radio_Surface ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:27:08.915Z,1526574428.915 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:08.919Z,1526574428.919 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2018-05-17T16:27:08.919Z,1526574428.919 [logger ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:08.920Z,1526574428.920 [logger](INFO): Join timeout helper Thread ID is 8950
2018-05-17T16:27:08.931Z,1526574428.931 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:27:08.931Z,1526574428.931 [logger ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:08.939Z,1526574428.939 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2018-05-17T16:27:08.939Z,1526574428.939 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:08.939Z,1526574428.939 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2018-05-17T16:27:08.940Z,1526574428.940 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:08.940Z,1526574428.940 [controlThread](INFO): Join timeout helper Thread ID is 8951
2018-05-17T16:27:09.247Z,1526574429.247 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:27:09.247Z,1526574429.247 [controlThread](DEBUG): Uninitializing ControlThread
2018-05-17T16:27:09.248Z,1526574429.248 [NAL9602](INFO): Powering down
2018-05-17T16:27:09.249Z,1526574429.249 [PNI_TCM](INFO): Powering down
2018-05-17T16:27:09.335Z,1526574429.335 [Aanderaa_O2](INFO): Powering down
2018-05-17T16:27:09.338Z,1526574429.338 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-05-17T16:27:09.339Z,1526574429.339 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2018-05-17T16:27:09.340Z,1526574429.340 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2018-05-17T16:27:09.340Z,1526574429.340 [MissionManager](INFO): Uninitializing Mission Default
2018-05-17T16:27:09.340Z,1526574429.340 [Default] Stopped
2018-05-17T16:27:09.340Z,1526574429.340 [Default](DEBUG): Aggregate::uninitialize Default
2018-05-17T16:27:09.341Z,1526574429.341 [Default:B.GoToSurface] Stopped
2018-05-17T16:27:09.341Z,1526574429.341 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2018-05-17T16:27:09.341Z,1526574429.341 [Default:CheckIn] Stopped
2018-05-17T16:27:09.341Z,1526574429.341 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2018-05-17T16:27:09.341Z,1526574429.341 [Default:CheckIn:Read_GPS] Stopped
2018-05-17T16:27:09.344Z,1526574429.344 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2018-05-17T16:27:09.344Z,1526574429.344 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2018-05-17T16:27:09.345Z,1526574429.345 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2018-05-17T16:27:09.345Z,1526574429.345 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2018-05-17T16:27:09.345Z,1526574429.345 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-05-17T16:27:09.345Z,1526574429.345 [BuoyancyServo](INFO): Powering down
2018-05-17T16:27:09.359Z,1526574429.359 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2018-05-17T16:27:09.359Z,1526574429.359 [ElevatorServo](INFO): Powering down
2018-05-17T16:27:09.360Z,1526574429.360 [MassServo](DEBUG): Uninitialize Mass Servo.
2018-05-17T16:27:09.360Z,1526574429.360 [MassServo](INFO): Powering down
2018-05-17T16:27:09.361Z,1526574429.361 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2018-05-17T16:27:09.361Z,1526574429.361 [RudderServo](INFO): Powering down
2018-05-17T16:27:09.362Z,1526574429.362 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2018-05-17T16:27:09.362Z,1526574429.362 [ThrusterServo](INFO): Powering down
2018-05-17T16:27:09.363Z,1526574429.363 [SBIT](DEBUG): Uninitialize SBIT Component.
2018-05-17T16:27:09.363Z,1526574429.363 [IBIT](DEBUG): Uninitialize IBIT Component.
2018-05-17T16:27:09.363Z,1526574429.363 [CBIT](DEBUG): Uninitialize CBIT Component.
2018-05-17T16:27:09.364Z,1526574429.364 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:09.484Z,1526574429.484 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:09.523Z,1526574429.523 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:09.526Z,1526574429.526 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:09.529Z,1526574429.529 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:09.556Z,1526574429.556 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:27:09.615Z,1526574429.615 [logger ThreadHandler](INFO): Thread cancelled.