2018-05-17T16:17:23.131Z,1526573843.131 [Supervisor](DEBUG): Initializing supervisor.
2018-05-17T16:17:23.134Z,1526573843.134 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2018-05-17T16:17:23.134Z,1526573843.134 [SyncHandler](INFO): Protected caller Thread ID is 8681
2018-05-17T16:17:23.135Z,1526573843.135 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2018-05-17T16:17:23.135Z,1526573843.135 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2018-05-17T16:17:23.136Z,1526573843.136 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 8682
2018-05-17T16:17:23.139Z,1526573843.139 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2018-05-17T16:17:23.150Z,1526573843.150 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2018-05-17T16:17:23.151Z,1526573843.151 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2018-05-17T16:17:23.151Z,1526573843.151 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 8683
2018-05-17T16:17:23.152Z,1526573843.152 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2018-05-17T16:17:23.153Z,1526573843.153 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2018-05-17T16:17:23.153Z,1526573843.153 [logger ThreadHandler](INFO): Protected caller Thread ID is 8684
2018-05-17T16:17:23.155Z,1526573843.155 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2018-05-17T16:17:23.156Z,1526573843.156 [Supervisor](INFO): Looking for Config files in directory: Config/
2018-05-17T16:17:23.157Z,1526573843.157 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2018-05-17T16:17:23.530Z,1526573843.530 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2018-05-17T16:17:23.530Z,1526573843.530 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2018-05-17T16:17:23.718Z,1526573843.718 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2018-05-17T16:17:23.719Z,1526573843.719 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2018-05-17T16:17:23.987Z,1526573843.987 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2018-05-17T16:17:23.987Z,1526573843.987 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2018-05-17T16:17:24.120Z,1526573844.120 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2018-05-17T16:17:24.121Z,1526573844.121 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2018-05-17T16:17:24.215Z,1526573844.215 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2018-05-17T16:17:24.216Z,1526573844.216 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2018-05-17T16:17:24.653Z,1526573844.653 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2018-05-17T16:17:24.654Z,1526573844.654 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2018-05-17T16:17:24.994Z,1526573844.994 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2018-05-17T16:17:24.995Z,1526573844.995 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2018-05-17T16:17:25.408Z,1526573845.408 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2018-05-17T16:17:25.408Z,1526573845.408 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2018-05-17T16:17:25.511Z,1526573845.511 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2018-05-17T16:17:25.512Z,1526573845.512 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2018-05-17T16:17:25.606Z,1526573845.606 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2018-05-17T16:17:25.607Z,1526573845.607 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2018-05-17T16:17:25.800Z,1526573845.800 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2018-05-17T16:17:25.801Z,1526573845.801 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2018-05-17T16:17:25.998Z,1526573845.998 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2018-05-17T16:17:25.999Z,1526573845.999 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2018-05-17T16:17:26.333Z,1526573846.333 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2018-05-17T16:17:26.334Z,1526573846.334 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2018-05-17T16:17:26.585Z,1526573846.585 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2018-05-17T16:17:26.586Z,1526573846.586 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2018-05-17T16:17:26.888Z,1526573846.888 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-daphne/
2018-05-17T16:17:26.889Z,1526573846.889 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Control.cfg
2018-05-17T16:17:26.991Z,1526573846.991 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/logger.cfg
2018-05-17T16:17:27.081Z,1526573847.081 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Servo.cfg
2018-05-17T16:17:27.176Z,1526573847.176 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Simulator.cfg
2018-05-17T16:17:27.261Z,1526573847.261 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Sensor.cfg
2018-05-17T16:17:27.408Z,1526573847.408 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/vehicle.cfg
2018-05-17T16:17:27.580Z,1526573847.580 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/workSite.cfg
2018-05-17T16:17:27.655Z,1526573847.655 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Battery.cfg
2018-05-17T16:17:27.878Z,1526573847.878 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2018-05-17T16:17:27.878Z,1526573847.878 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/secure.cfg
2018-05-17T16:17:27.959Z,1526573847.959 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Navigation.cfg
2018-05-17T16:17:28.047Z,1526573848.047 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/BIT.cfg
2018-05-17T16:17:28.144Z,1526573848.144 [Supervisor](INFO): Opening Config file at: Config/lrauv-daphne/Science.cfg
2018-05-17T16:17:28.264Z,1526573848.264 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-daphne/root/
2018-05-17T16:17:28.264Z,1526573848.264 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2018-05-17T16:17:28.267Z,1526573848.267 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2018-05-17T16:17:28.500Z,1526573848.500 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2018-05-17T16:17:28.501Z,1526573848.501 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2018-05-17T16:17:28.542Z,1526573848.542 [DepthRateCalculator] Loaded
2018-05-17T16:17:28.543Z,1526573848.543 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2018-05-17T16:17:28.548Z,1526573848.548 [PitchRateCalculator] Loaded
2018-05-17T16:17:28.549Z,1526573848.549 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2018-05-17T16:17:28.564Z,1526573848.564 [SpeedCalculator] Loaded
2018-05-17T16:17:28.564Z,1526573848.564 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2018-05-17T16:17:28.584Z,1526573848.584 [TempGradientCalculator] Loaded
2018-05-17T16:17:28.584Z,1526573848.584 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2018-05-17T16:17:28.599Z,1526573848.599 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2018-05-17T16:17:28.599Z,1526573848.599 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2018-05-17T16:17:28.604Z,1526573848.604 [YawRateCalculator] Loaded
2018-05-17T16:17:28.605Z,1526573848.605 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2018-05-17T16:17:28.643Z,1526573848.643 [ElevatorOffsetCalculator] Loaded
2018-05-17T16:17:28.643Z,1526573848.643 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2018-05-17T16:17:28.644Z,1526573848.644 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2018-05-17T16:17:28.644Z,1526573848.644 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2018-05-17T16:17:28.730Z,1526573848.730 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2018-05-17T16:17:28.730Z,1526573848.730 [StratificationFrontDetector](DEBUG): (re)initializing
2018-05-17T16:17:28.730Z,1526573848.730 [StratificationFrontDetector] Loaded
2018-05-17T16:17:28.731Z,1526573848.731 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2018-05-17T16:17:28.731Z,1526573848.731 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2018-05-17T16:17:28.732Z,1526573848.732 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2018-05-17T16:17:28.843Z,1526573848.843 [BuoyancyServo] Loaded
2018-05-17T16:17:28.843Z,1526573848.843 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2018-05-17T16:17:28.857Z,1526573848.857 [ElevatorServo] Loaded
2018-05-17T16:17:28.857Z,1526573848.857 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2018-05-17T16:17:28.871Z,1526573848.871 [MassServo] Loaded
2018-05-17T16:17:28.871Z,1526573848.871 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2018-05-17T16:17:28.886Z,1526573848.886 [RudderServo] Loaded
2018-05-17T16:17:28.886Z,1526573848.886 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2018-05-17T16:17:28.899Z,1526573848.899 [ThrusterServo] Loaded
2018-05-17T16:17:28.899Z,1526573848.899 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2018-05-17T16:17:28.900Z,1526573848.900 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2018-05-17T16:17:28.900Z,1526573848.900 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2018-05-17T16:17:28.914Z,1526573848.914 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2018-05-17T16:17:28.914Z,1526573848.914 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2018-05-17T16:17:29.013Z,1526573849.013 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2018-05-17T16:17:29.014Z,1526573849.014 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2018-05-17T16:17:29.231Z,1526573849.231 [AHRS_M2](CRITICAL): Could not find element AHRS_M2.loadControl
2018-05-17T16:17:29.231Z,1526573849.231 [AHRS_M2](CRITICAL): Could not find element AHRS_M2.uart
2018-05-17T16:17:29.231Z,1526573849.231 [AHRS_M2](CRITICAL): Could not find element AHRS_M2.baud
2018-05-17T16:17:29.295Z,1526573849.295 [AHRS_M2](CRITICAL): No configuration setting for: AHRS_M2.verbosity
2018-05-17T16:17:29.299Z,1526573849.299 [AHRS_M2] Loaded
2018-05-17T16:17:29.299Z,1526573849.299 [ComponentRegistry](DEBUG): SyncComponent "AHRS_M2" handled in the control thread.
2018-05-17T16:17:29.375Z,1526573849.375 [DataOverHttps] Loaded
2018-05-17T16:17:29.375Z,1526573849.375 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2018-05-17T16:17:29.387Z,1526573849.387 [Depth_Keller] Loaded
2018-05-17T16:17:29.388Z,1526573849.388 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2018-05-17T16:17:29.393Z,1526573849.393 [DropWeight] Loaded
2018-05-17T16:17:29.393Z,1526573849.393 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2018-05-17T16:17:29.393Z,1526573849.393 [Module Loader](CRITICAL): Could not find element GobyModem.loadAtStartup
2018-05-17T16:17:29.485Z,1526573849.485 [NAL9602] Loaded
2018-05-17T16:17:29.486Z,1526573849.486 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2018-05-17T16:17:29.501Z,1526573849.500 [Onboard] Loaded
2018-05-17T16:17:29.501Z,1526573849.501 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2018-05-17T16:17:29.511Z,1526573849.511 [Radio_Surface] Loaded
2018-05-17T16:17:29.511Z,1526573849.511 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2018-05-17T16:17:29.512Z,1526573849.512 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408844E0
2018-05-17T16:17:29.512Z,1526573849.512 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 8766
2018-05-17T16:17:29.513Z,1526573849.513 [Module Loader](CRITICAL): Could not find element RDI_Pathfinder.loadAtStartup
2018-05-17T16:17:29.556Z,1526573849.556 [PNI_TCM] Loaded
2018-05-17T16:17:29.556Z,1526573849.556 [ComponentRegistry](DEBUG): SyncComponent "PNI_TCM" handled in the control thread.
2018-05-17T16:17:31.238Z,1526573851.238 [BPC1] Loaded
2018-05-17T16:17:31.238Z,1526573851.238 [ComponentRegistry](DEBUG): SyncComponent "BPC1" handled in the control thread.
2018-05-17T16:17:31.239Z,1526573851.239 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2018-05-17T16:17:31.239Z,1526573851.239 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2018-05-17T16:17:31.368Z,1526573851.368 [SBIT](DEBUG): Construct Startup Built In Test.
2018-05-17T16:17:31.389Z,1526573851.389 [SBIT] Loaded
2018-05-17T16:17:31.389Z,1526573851.389 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2018-05-17T16:17:31.390Z,1526573851.390 [IBIT](DEBUG): Construct Initiated Built In Test.
2018-05-17T16:17:31.401Z,1526573851.401 [IBIT] Loaded
2018-05-17T16:17:31.401Z,1526573851.401 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2018-05-17T16:17:31.404Z,1526573851.404 [CBIT](DEBUG): Construct Continuous Built In Test.
2018-05-17T16:17:31.546Z,1526573851.546 [CBIT] Loaded
2018-05-17T16:17:31.547Z,1526573851.547 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2018-05-17T16:17:31.547Z,1526573851.547 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2018-05-17T16:17:31.547Z,1526573851.547 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2018-05-17T16:17:32.134Z,1526573852.134 [Aanderaa_O2] Loaded
2018-05-17T16:17:32.134Z,1526573852.134 [ComponentRegistry](DEBUG): SyncComponent "Aanderaa_O2" handled in the control thread.
2018-05-17T16:17:32.146Z,1526573852.146 [CANONSampler] Loaded
2018-05-17T16:17:32.146Z,1526573852.146 [ComponentRegistry](DEBUG): SyncComponent "CANONSampler" handled in the control thread.
2018-05-17T16:17:32.220Z,1526573852.220 [CTD_NeilBrown] Loaded
2018-05-17T16:17:32.221Z,1526573852.221 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2018-05-17T16:17:32.222Z,1526573852.222 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 409444E0
2018-05-17T16:17:32.222Z,1526573852.222 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 8767
2018-05-17T16:17:32.266Z,1526573852.266 [CTD_Seabird] Loaded
2018-05-17T16:17:32.267Z,1526573852.267 [ComponentRegistry](DEBUG): Component "CTD_Seabird" handled in its own thread.
2018-05-17T16:17:32.268Z,1526573852.268 [CTD_Seabird ThreadHandler](DEBUG): Created PCaller Thread at 409744E0
2018-05-17T16:17:32.268Z,1526573852.268 [CTD_Seabird ThreadHandler](INFO): Protected caller Thread ID is 8768
2018-05-17T16:17:32.282Z,1526573852.282 [PAR_Licor] Loaded
2018-05-17T16:17:32.282Z,1526573852.282 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2018-05-17T16:17:32.328Z,1526573852.328 [WetLabsBB2FL] Loaded
2018-05-17T16:17:32.328Z,1526573852.328 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2018-05-17T16:17:32.329Z,1526573852.329 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 409A44E0
2018-05-17T16:17:32.330Z,1526573852.330 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 8769
2018-05-17T16:17:32.331Z,1526573852.331 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2018-05-17T16:17:32.331Z,1526573852.331 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2018-05-17T16:17:32.400Z,1526573852.400 [VerticalControl](DEBUG): Construct VerticalControl.
2018-05-17T16:17:32.480Z,1526573852.480 [VerticalControl] Loaded
2018-05-17T16:17:32.480Z,1526573852.480 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2018-05-17T16:17:32.481Z,1526573852.481 [HorizontalControl](DEBUG): Construct HorizontalControl.
2018-05-17T16:17:32.534Z,1526573852.534 [HorizontalControl] Loaded
2018-05-17T16:17:32.535Z,1526573852.535 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2018-05-17T16:17:32.535Z,1526573852.535 [SpeedControl](DEBUG): Construct SpeedControl.
2018-05-17T16:17:32.537Z,1526573852.537 [SpeedControl] Loaded
2018-05-17T16:17:32.537Z,1526573852.537 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2018-05-17T16:17:32.538Z,1526573852.538 [LoopControl](DEBUG): Construct LoopControl.
2018-05-17T16:17:32.538Z,1526573852.538 [LoopControl] Loaded
2018-05-17T16:17:32.539Z,1526573852.539 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2018-05-17T16:17:32.539Z,1526573852.539 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2018-05-17T16:17:32.540Z,1526573852.540 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2018-05-17T16:17:32.564Z,1526573852.564 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2018-05-17T16:17:32.564Z,1526573852.564 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2018-05-17T16:17:32.652Z,1526573852.652 [DeadReckonUsingSpeedCalculator] Loaded
2018-05-17T16:17:32.653Z,1526573852.653 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2018-05-17T16:17:32.705Z,1526573852.705 [DeadReckonWithRespectToSeafloor] Loaded
2018-05-17T16:17:32.705Z,1526573852.705 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonWithRespectToSeafloor" handled in the control thread.
2018-05-17T16:17:32.721Z,1526573852.721 [NavChart] Loaded
2018-05-17T16:17:32.721Z,1526573852.721 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2018-05-17T16:17:32.725Z,1526573852.725 [UniversalFixResidualReporter] Loaded
2018-05-17T16:17:32.726Z,1526573852.726 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2018-05-17T16:17:32.726Z,1526573852.726 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2018-05-17T16:17:32.730Z,1526573852.730 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2018-05-17T16:17:32.731Z,1526573852.731 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2018-05-17T16:17:32.737Z,1526573852.737 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2018-05-17T16:17:32.738Z,1526573852.738 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 40A304E0
2018-05-17T16:17:32.739Z,1526573852.739 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 8770
2018-05-17T16:17:32.743Z,1526573852.743 [Supervisor](INFO): Main Thread ID is 8514
2018-05-17T16:17:32.744Z,1526573852.744 [Supervisor](DEBUG): Running supervisor.
2018-05-17T16:17:32.744Z,1526573852.744 [CommandLine ThreadHandler](INFO): Handler Thread ID is 8771
2018-05-17T16:17:32.747Z,1526573852.747 [controlThread ThreadHandler](INFO): Handler Thread ID is 8772
2018-05-17T16:17:32.747Z,1526573852.747 [controlThread](DEBUG): Initializing ControlThread
2018-05-17T16:17:32.748Z,1526573852.748 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-05-17T16:17:32.748Z,1526573852.748 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2018-05-17T16:17:32.749Z,1526573852.749 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2018-05-17T16:17:32.749Z,1526573852.749 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2018-05-17T16:17:32.750Z,1526573852.750 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2018-05-17T16:17:32.751Z,1526573852.751 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2018-05-17T16:17:32.751Z,1526573852.751 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2018-05-17T16:17:32.757Z,1526573852.757 [SBIT](INFO): Initialize SBIT Component.
2018-05-17T16:17:32.757Z,1526573852.757 [SBIT](IMPORTANT): git: 2018-03-26-70-gf564a3b
2018-05-17T16:17:32.758Z,1526573852.758 [SBIT](INFO): git hash: f564a3bc58329a2b76cea2ca9c8813404f43c181
2018-05-17T16:17:32.758Z,1526573852.758 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2018-05-17T16:17:32.759Z,1526573852.759 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #639 PREEMPT Wed Mar 12 12:53:33 PDT 2014
Kernel Reported: #2 PREEMPT Thu Jan 11 20:13:48 PST 2018
2018-05-17T16:17:32.760Z,1526573852.760 [SBIT](INFO): Beginning SBIT in 23.000000 seconds.
2018-05-17T16:17:32.761Z,1526573852.761 [IBIT](INFO): Initialize IBIT Component.
2018-05-17T16:17:32.761Z,1526573852.761 [CBIT](DEBUG): Initialize CBIT Component.
2018-05-17T16:17:32.762Z,1526573852.762 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2018-05-17T16:17:32.763Z,1526573852.763 [logger ThreadHandler](INFO): Handler Thread ID is 8773
2018-05-17T16:17:32.783Z,1526573852.783 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 8774
2018-05-17T16:17:32.789Z,1526573852.789 [Radio_Surface](INFO): Powering up
2018-05-17T16:17:32.795Z,1526573852.795 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 8775
2018-05-17T16:17:32.796Z,1526573852.796 [CTD_NeilBrown](INFO): Powering down
2018-05-17T16:17:32.823Z,1526573852.823 [CTD_Seabird ThreadHandler](INFO): Handler Thread ID is 8776
2018-05-17T16:17:32.824Z,1526573852.824 [CTD_Seabird](INFO): Initializing
2018-05-17T16:17:32.824Z,1526573852.824 [CTD_Seabird](INFO): Checking LCM
2018-05-17T16:17:32.833Z,1526573852.833 [CTD_Seabird](INFO): LCM OK
2018-05-17T16:17:32.833Z,1526573852.833 [CTD_Seabird](INFO): Powering up
2018-05-17T16:17:32.843Z,1526573852.843 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 8777
2018-05-17T16:17:32.844Z,1526573852.844 [WetLabsBB2FL](INFO): Powering down
2018-05-17T16:17:32.871Z,1526573852.871 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2018-05-17T16:17:32.873Z,1526573852.873 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 8778
2018-05-17T16:17:32.877Z,1526573852.877 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2018-05-17T16:17:32.877Z,1526573852.877 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2018-05-17T16:17:32.877Z,1526573852.877 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2018-05-17T16:17:32.877Z,1526573852.877 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2018-05-17T16:17:32.878Z,1526573852.878 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2018-05-17T16:17:32.878Z,1526573852.878 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2018-05-17T16:17:32.878Z,1526573852.878 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2018-05-17T16:17:32.878Z,1526573852.878 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2018-05-17T16:17:32.879Z,1526573852.879 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2018-05-17T16:17:32.879Z,1526573852.879 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2018-05-17T16:17:32.879Z,1526573852.879 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2018-05-17T16:17:32.879Z,1526573852.879 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2018-05-17T16:17:32.880Z,1526573852.880 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2018-05-17T16:17:32.880Z,1526573852.880 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2018-05-17T16:17:32.880Z,1526573852.880 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2018-05-17T16:17:32.880Z,1526573852.880 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2018-05-17T16:17:32.892Z,1526573852.892 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2018-05-17T16:17:32.893Z,1526573852.893 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2018-05-17T16:17:32.893Z,1526573852.893 [LoopControl](DEBUG): Initialize LoopControlComponent.
2018-05-17T16:17:32.894Z,1526573852.894 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-05-17T16:17:32.895Z,1526573852.895 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-05-17T16:17:32.895Z,1526573852.895 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-05-17T16:17:32.896Z,1526573852.896 [DeadReckonWithRespectToSeafloor](DEBUG): Initializing DeadReckonWithRespectToSeafloor component.
2018-05-17T16:17:32.896Z,1526573852.896 [DeadReckonWithRespectToSeafloor](INFO): Will consider orientation measurement stale after 120s.
2018-05-17T16:17:32.896Z,1526573852.896 [DeadReckonWithRespectToSeafloor](INFO): Will consider velocity measurement stale after 20s.
2018-05-17T16:17:32.897Z,1526573852.897 [NavChart](DEBUG): Initialize NavChart Navigation.
2018-05-17T16:17:32.897Z,1526573852.897 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2018-05-17T16:17:32.898Z,1526573852.898 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2018-05-17T16:17:32.936Z,1526573852.936 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2018-05-17T16:17:32.963Z,1526573852.963 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2018-05-17T16:17:32.964Z,1526573852.964 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2018-05-17T16:17:33.051Z,1526573853.051 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2018-05-17T16:17:33.053Z,1526573853.053 [Default:A.Wait](DEBUG): Construct Wait.
2018-05-17T16:17:33.054Z,1526573853.054 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2018-05-17T16:17:33.085Z,1526573853.085 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2018-05-17T16:17:33.104Z,1526573853.104 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2018-05-17T16:17:33.110Z,1526573853.110 [Default:E.Execute](DEBUG): Construct Execute.
2018-05-17T16:17:33.130Z,1526573853.130 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2018-05-17T16:17:33.143Z,1526573853.143 [controlThread](DEBUG): Component order: CycleStarter,AHRS_M2,DataOverHttps,Depth_Keller,DropWeight,NAL9602,Onboard,PNI_TCM,BPC1,Aanderaa_O2,CANONSampler,PAR_Licor,Depth_Keller,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,ElevatorOffsetCalculator,StratificationFrontDetector,DeadReckonUsingSpeedCalculator,DeadReckonWithRespectToSeafloor,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2018-05-17T16:17:33.190Z,1526573853.190 [DataOverHttps](DEBUG): dashIP=134.89.2.23 starts with a digit so assuming it is a numeric IP
2018-05-17T16:17:33.214Z,1526573853.214 [Depth_Keller](ERROR): Pressure reading out of range: 1831.023193 decibar
2018-05-17T16:17:33.450Z,1526573853.450 [CANONSampler](INFO): Powering down
2018-05-17T16:17:33.637Z,1526573853.637 [DepthRateCalculator](ERROR): Depth measurement is not active
2018-05-17T16:17:33.744Z,1526573853.744 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:33.768Z,1526573853.768 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:33.883Z,1526573853.883 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2018-05-17T16:17:33.891Z,1526573853.891 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2018-05-17T16:17:33.913Z,1526573853.913 [ElevatorServo](DEBUG): Initializing EZServoServo.
2018-05-17T16:17:33.919Z,1526573853.919 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2018-05-17T16:17:33.925Z,1526573853.925 [MassServo](DEBUG): Initializing EZServoServo.
2018-05-17T16:17:33.931Z,1526573853.931 [MassServo](DEBUG): Initializing MassServo.
2018-05-17T16:17:33.953Z,1526573853.953 [RudderServo](DEBUG): Initializing EZServoServo.
2018-05-17T16:17:33.959Z,1526573853.959 [RudderServo](DEBUG): Initializing RudderServo.
2018-05-17T16:17:33.981Z,1526573853.981 [ThrusterServo](DEBUG): Initializing EZServoServo.
2018-05-17T16:17:33.987Z,1526573853.987 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2018-05-17T16:17:34.039Z,1526573854.039 [CommandLine](FAULT): Scheduling is paused
2018-05-17T16:17:34.040Z,1526573854.040 [CBIT](INFO): Critical error at 20180517T161729
2018-05-17T16:17:34.040Z,1526573854.040 [Supervisor](INFO): Stop Mission called by CBIT::checkCriticals
2018-05-17T16:17:34.126Z,1526573854.126 [AHRS_M2](FAULT): Failed to initialize
2018-05-17T16:17:34.126Z,1526573854.126 [AHRS_M2] Communications Fault, FailCount= 1
2018-05-17T16:17:34.126Z,1526573854.126 [AHRS_M2](ERROR): Communications Fault
2018-05-17T16:17:34.234Z,1526573854.234 [DropWeight](CRITICAL): DROP WEIGHT MISSING.

2018-05-17T16:17:34.234Z,1526573854.234 [DropWeight] Hardware Fault, FailCount= 1
2018-05-17T16:17:34.234Z,1526573854.234 [DropWeight](ERROR): Hardware Fault
2018-05-17T16:17:34.326Z,1526573854.326 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:34.327Z,1526573854.327 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:34.352Z,1526573854.352 [CBIT](INFO): Critical error at 20180517T161734
2018-05-17T16:17:34.354Z,1526573854.354 [CBIT](ERROR): Communications Fault in component: AHRS_M2
2018-05-17T16:17:34.355Z,1526573854.355 [CBIT](CRITICAL): Communications Fault in component: AHRS_M2
2018-05-17T16:17:34.355Z,1526573854.355 [CBIT](ERROR): Hardware Fault in component: DropWeight
2018-05-17T16:17:34.355Z,1526573854.355 [CBIT](CRITICAL): Hardware Fault in component: DropWeight
2018-05-17T16:17:34.530Z,1526573854.530 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:34.543Z,1526573854.543 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:34.948Z,1526573854.948 [CBIT](INFO): Critical error at 20180517T161734
2018-05-17T16:17:35.042Z,1526573855.042 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:35.043Z,1526573855.043 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:35.442Z,1526573855.442 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:35.447Z,1526573855.447 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:35.811Z,1526573855.811 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:35.811Z,1526573855.811 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:36.214Z,1526573856.214 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:36.219Z,1526573856.219 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:36.711Z,1526573856.711 [Aanderaa_O2](INFO): Powering down
2018-05-17T16:17:36.818Z,1526573856.818 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:36.819Z,1526573856.819 [DeadReckonWithRespectToSeafloor](DEBUG): Starting up and don't have orientation data yet.
2018-05-17T16:17:38.463Z,1526573858.463 [CTD_Seabird](INFO): Stopping potential previous instance(s) of CTD_Seabird LCM interface
2018-05-17T16:17:38.566Z,1526573858.566 [CTD_Seabird](INFO): Started Seabird LCM interface with command:nohup ./lrauv-framework/onboard/bin/gpctd -ldir /mnt/mmc/LRAUV/Logs/latest/ -dev /dev/ttyC6 -b 9600 >& /dev/null &
2018-05-17T16:17:38.597Z,1526573858.597 [CTD_Seabird](INFO): LCM subscribed to channel:ctd_t.seabird-gpctd
2018-05-17T16:17:38.976Z,1526573858.976 [CTD_Seabird](INFO): Stopping potential previous instance(s) of CTD_Seabird LCM interface
2018-05-17T16:17:38.976Z,1526573858.976 [CTD_Seabird](INFO): Powering down
2018-05-17T16:17:56.364Z,1526573876.364 [SBIT](IMPORTANT): Beginning Startup BIT
2018-05-17T16:17:56.377Z,1526573876.377 [CBIT](IMPORTANT): Beginning ground fault scan
2018-05-17T16:17:59.668Z,1526573879.668 [NAL9602](INFO): Powering up NAL9602
2018-05-17T16:18:07.358Z,1526573887.358 [CBIT](IMPORTANT): No ground fault detected
mA:
CHAN A0 (Batt): -0.002193
CHAN A1 (24V): -0.006578
CHAN A2 (12V): -0.001979
CHAN A3 (5V): -0.001110
CHAN B0 (3.3V): 0.000240
CHAN B1 (3.15aV): -0.000207
CHAN B2 (3.15bV): -0.000234
CHAN B3 (GND): 0.000518
OPEN: -0.000686
Full Scale Calc: 4.765 mA, -1.589 mA
2018-05-17T16:18:10.860Z,1526573890.860 [NAL9602](INFO): NAL9602 initialized
2018-05-17T16:18:50.445Z,1526573930.445 [SBIT](IMPORTANT): SBIT PASSED
2018-05-17T16:18:50.493Z,1526573930.493 [CommandLine](IMPORTANT): got command configSet list
2018-05-17T16:18:50.493Z,1526573930.493 [CommandLine](IMPORTANT): Listing configuration overrides from Data/persisted.cfg
2018-05-17T16:18:50.494Z,1526573930.494 [CommandLine](IMPORTANT): Rowe_600LCM.loadAtStartup=0 bool;

2018-05-17T16:18:50.810Z,1526573930.810 [MissionManager](IMPORTANT): Started mission Startup
2018-05-17T16:18:50.810Z,1526573930.810 [Startup] Running Loop=1
2018-05-17T16:18:50.810Z,1526573930.810 [Startup](DEBUG): Aggregate::initialize Startup
2018-05-17T16:18:50.810Z,1526573930.810 [Startup:A.GoToSurface] Running Loop=1
2018-05-17T16:18:50.810Z,1526573930.810 [Startup:A.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2018-05-17T16:18:50.811Z,1526573930.811 [Startup:A.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2018-05-17T16:18:50.811Z,1526573930.811 [Startup:A.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2018-05-17T16:18:50.812Z,1526573930.812 [Startup:A.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2018-05-17T16:18:50.812Z,1526573930.812 [Startup:A.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2018-05-17T16:18:50.813Z,1526573930.813 [Startup:A.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2018-05-17T16:18:50.818Z,1526573930.818 [Startup:StartupSatComms] Running Loop=1
2018-05-17T16:18:50.819Z,1526573930.819 [Startup:StartupSatComms](DEBUG): Aggregate::initialize Startup:StartupSatComms
2018-05-17T16:18:50.819Z,1526573930.819 [Startup:StartupSatComms:A] Running Loop=1
2018-05-17T16:18:51.240Z,1526573931.240 [Startup:StartupSatComms:A](DEBUG): Initialize ReadDataComponent to sense latitude_fix
2018-05-17T16:19:51.207Z,1526573991.207 [Startup:StartupSatComms:A](INFO): Timed out from 2018-05-17T16:18:50.8Z
2018-05-17T16:19:51.207Z,1526573991.207 [Startup:StartupSatComms:A] Stopped
2018-05-17T16:19:51.207Z,1526573991.207 [Startup:StartupSatComms:B] Running Loop=1
2018-05-17T16:19:51.609Z,1526573991.609 [Startup:StartupSatComms:B](DEBUG): Initialize ReadDataComponent to sense platform_communications
2018-05-17T16:20:33.211Z,1526574033.211 [DeadReckonUsingSpeedCalculator](ERROR): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan
2018-05-17T16:20:33.211Z,1526574033.211 [DeadReckonUsingSpeedCalculator] Software Fault, FailCount= 1
2018-05-17T16:20:33.211Z,1526574033.211 [DeadReckonUsingSpeedCalculator](ERROR): Software Fault
2018-05-17T16:20:33.213Z,1526574033.213 [DeadReckonWithRespectToSeafloor](ERROR): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan
2018-05-17T16:20:33.213Z,1526574033.213 [DeadReckonWithRespectToSeafloor] Software Fault, FailCount= 1
2018-05-17T16:20:33.213Z,1526574033.213 [DeadReckonWithRespectToSeafloor](ERROR): Software Fault
2018-05-17T16:20:33.225Z,1526574033.225 [CBIT](ERROR): Software Fault in component: DeadReckonUsingSpeedCalculator
2018-05-17T16:20:33.226Z,1526574033.226 [CBIT](ERROR): Software Fault in component: DeadReckonWithRespectToSeafloor
2018-05-17T16:20:33.619Z,1526574033.619 [CBIT](INFO): Clearing failed state for component DeadReckonUsingSpeedCalculator
2018-05-17T16:20:33.619Z,1526574033.619 [DeadReckonUsingSpeedCalculator] No Fault, FailCount= 1
2018-05-17T16:20:33.620Z,1526574033.620 [CBIT](INFO): Clearing failed state for component DeadReckonWithRespectToSeafloor
2018-05-17T16:20:33.620Z,1526574033.620 [DeadReckonWithRespectToSeafloor] No Fault, FailCount= 1
2018-05-17T16:20:34.017Z,1526574034.017 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2018-05-17T16:20:34.017Z,1526574034.017 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2018-05-17T16:20:34.017Z,1526574034.017 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2018-05-17T16:20:34.018Z,1526574034.018 [DeadReckonWithRespectToSeafloor](DEBUG): Initializing DeadReckonWithRespectToSeafloor component.
2018-05-17T16:20:34.018Z,1526574034.018 [DeadReckonWithRespectToSeafloor](INFO): Will consider orientation measurement stale after 120s.
2018-05-17T16:20:34.019Z,1526574034.019 [DeadReckonWithRespectToSeafloor](INFO): Will consider velocity measurement stale after 20s.
2018-05-17T16:20:38.395Z,1526574038.395 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.004000
2018-05-17T16:20:42.410Z,1526574042.410 [DataOverHttps](INFO): Sending 25 bytes from file Logs/20180517T154543/Courier0016.lzma
2018-05-17T16:20:43.212Z,1526574043.212 [DataOverHttps](INFO): Moved sent file to Logs/20180517T154543/Courier0016.lzma.bak
2018-05-17T16:20:43.212Z,1526574043.212 [DataOverHttps](INFO): SBD MOMSN=8283033
2018-05-17T16:20:52.029Z,1526574052.029 [Startup:StartupSatComms:B](INFO): Timed out from 2018-05-17T16:19:51.2Z
2018-05-17T16:20:52.029Z,1526574052.029 [Startup:StartupSatComms:B] Stopped
2018-05-17T16:20:52.029Z,1526574052.029 [Startup:StartupSatComms](INFO): Completed Startup:StartupSatComms
2018-05-17T16:20:52.029Z,1526574052.029 [Startup:StartupSatComms] Stopped
2018-05-17T16:20:52.030Z,1526574052.030 [Startup:StartupSatComms](DEBUG): Aggregate::uninitialize Startup:StartupSatComms
2018-05-17T16:20:52.031Z,1526574052.031 [Startup](INFO): Completed Startup
2018-05-17T16:20:52.031Z,1526574052.031 [MissionManager](INFO): Startup is completed.
2018-05-17T16:20:52.031Z,1526574052.031 [MissionManager](INFO): Uninitializing Mission Startup
2018-05-17T16:20:52.031Z,1526574052.031 [Startup] Stopped
2018-05-17T16:20:52.031Z,1526574052.031 [Startup](DEBUG): Aggregate::uninitialize Startup
2018-05-17T16:20:52.031Z,1526574052.031 [Startup:A.GoToSurface] Stopped
2018-05-17T16:20:52.031Z,1526574052.031 [Startup:A.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2018-05-17T16:20:52.087Z,1526574052.087 [DataOverHttps](INFO): Sending 323 bytes from file Logs/20180517T161723/Courier0000.lzma
2018-05-17T16:20:52.182Z,1526574052.182 [MissionManager](IMPORTANT): Started mission Default
2018-05-17T16:20:52.182Z,1526574052.182 [Default] Running Loop=1
2018-05-17T16:20:52.182Z,1526574052.182 [Default](DEBUG): Aggregate::initialize Default
2018-05-17T16:20:52.182Z,1526574052.182 [Default:B.GoToSurface] Running Loop=1
2018-05-17T16:20:52.182Z,1526574052.182 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2018-05-17T16:20:52.187Z,1526574052.187 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2018-05-17T16:20:52.187Z,1526574052.187 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2018-05-17T16:20:52.187Z,1526574052.187 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2018-05-17T16:20:52.188Z,1526574052.188 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2018-05-17T16:20:52.188Z,1526574052.188 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2018-05-17T16:20:52.188Z,1526574052.188 [Default:A.Wait] Running Loop=1
2018-05-17T16:20:52.189Z,1526574052.189 [Default:A.Wait](DEBUG): Initialize Wait Component.
2018-05-17T16:20:52.863Z,1526574052.863 [DataOverHttps](INFO): Moved sent file to Logs/20180517T161723/Courier0000.lzma.bak
2018-05-17T16:20:52.864Z,1526574052.864 [DataOverHttps](INFO): SBD MOMSN=8283035
2018-05-17T16:21:05.291Z,1526574065.291 [Default:A.Wait](INFO): Done Waiting.
2018-05-17T16:21:05.292Z,1526574065.292 [Default:A.Wait] Stopped
2018-05-17T16:21:05.292Z,1526574065.292 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2018-05-17T16:21:05.695Z,1526574065.695 [Default:CheckIn] Running Loop=1
2018-05-17T16:21:05.695Z,1526574065.695 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2018-05-17T16:21:05.696Z,1526574065.696 [Default:CheckIn:Read_GPS] Running Loop=1
2018-05-17T16:21:06.095Z,1526574066.095 [Default:CheckIn:Read_GPS](DEBUG): Initialize ReadDataComponent to sense time_fix
2018-05-17T16:22:27.476Z,1526574147.476 [CommandLine](IMPORTANT): got command restart application
2018-05-17T16:22:28.485Z,1526574148.485 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:22:28.486Z,1526574148.486 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:28.550Z,1526574148.550 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2018-05-17T16:22:28.551Z,1526574148.551 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:28.551Z,1526574148.551 [CommandLine](INFO): Join timeout helper Thread ID is 8810
2018-05-17T16:22:28.558Z,1526574148.558 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2018-05-17T16:22:28.559Z,1526574148.559 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:28.559Z,1526574148.559 [NavChartDb](INFO): Join timeout helper Thread ID is 8811
2018-05-17T16:22:28.851Z,1526574148.851 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:22:28.851Z,1526574148.851 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:28.867Z,1526574148.867 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2018-05-17T16:22:28.868Z,1526574148.868 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:28.868Z,1526574148.868 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 8812
2018-05-17T16:22:29.087Z,1526574149.087 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:22:29.087Z,1526574149.087 [WetLabsBB2FL](INFO): Powering down
2018-05-17T16:22:29.088Z,1526574149.088 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:29.094Z,1526574149.094 [ComponentRegistry](INFO): Shutting down CTD_Seabird ThreadHandler
2018-05-17T16:22:29.094Z,1526574149.094 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:29.095Z,1526574149.095 [CTD_Seabird](INFO): Join timeout helper Thread ID is 8813
2018-05-17T16:22:29.223Z,1526574149.223 [CTD_Seabird ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:22:29.425Z,1526574149.425 [CTD_Seabird](INFO): Stopping potential previous instance(s) of CTD_Seabird LCM interface
2018-05-17T16:22:29.425Z,1526574149.425 [CTD_Seabird](INFO): Powering down
2018-05-17T16:22:29.426Z,1526574149.426 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:29.434Z,1526574149.434 [ComponentRegistry](INFO): Shutting down CTD_NeilBrown ThreadHandler
2018-05-17T16:22:29.435Z,1526574149.435 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:29.435Z,1526574149.435 [CTD_NeilBrown](INFO): Join timeout helper Thread ID is 8815
2018-05-17T16:22:29.551Z,1526574149.551 [CTD_NeilBrown ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:22:29.551Z,1526574149.551 [CTD_NeilBrown](INFO): Powering down
2018-05-17T16:22:29.552Z,1526574149.552 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:29.559Z,1526574149.559 [ComponentRegistry](INFO): Shutting down Radio_Surface ThreadHandler
2018-05-17T16:22:29.560Z,1526574149.560 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:29.560Z,1526574149.560 [Radio_Surface](INFO): Join timeout helper Thread ID is 8816
2018-05-17T16:22:29.843Z,1526574149.843 [Radio_Surface ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:22:29.843Z,1526574149.843 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:29.847Z,1526574149.847 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2018-05-17T16:22:29.847Z,1526574149.847 [logger ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:29.848Z,1526574149.848 [logger](INFO): Join timeout helper Thread ID is 8817
2018-05-17T16:22:29.851Z,1526574149.851 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:22:29.851Z,1526574149.851 [logger ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:29.867Z,1526574149.867 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2018-05-17T16:22:29.867Z,1526574149.867 [CommandLine ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:29.867Z,1526574149.867 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2018-05-17T16:22:29.868Z,1526574149.868 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:29.868Z,1526574149.868 [controlThread](INFO): Join timeout helper Thread ID is 8818
2018-05-17T16:22:30.047Z,1526574150.047 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2018-05-17T16:22:30.047Z,1526574150.047 [controlThread](DEBUG): Uninitializing ControlThread
2018-05-17T16:22:30.048Z,1526574150.048 [NAL9602](INFO): Powering down
2018-05-17T16:22:30.049Z,1526574150.049 [PNI_TCM](INFO): Powering down
2018-05-17T16:22:30.135Z,1526574150.135 [Aanderaa_O2](INFO): Powering down
2018-05-17T16:22:30.138Z,1526574150.138 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2018-05-17T16:22:30.139Z,1526574150.139 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2018-05-17T16:22:30.140Z,1526574150.140 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2018-05-17T16:22:30.140Z,1526574150.140 [MissionManager](INFO): Uninitializing Mission Default
2018-05-17T16:22:30.140Z,1526574150.140 [Default] Stopped
2018-05-17T16:22:30.140Z,1526574150.140 [Default](DEBUG): Aggregate::uninitialize Default
2018-05-17T16:22:30.141Z,1526574150.141 [Default:B.GoToSurface] Stopped
2018-05-17T16:22:30.141Z,1526574150.141 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2018-05-17T16:22:30.141Z,1526574150.141 [Default:CheckIn] Stopped
2018-05-17T16:22:30.141Z,1526574150.141 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2018-05-17T16:22:30.141Z,1526574150.141 [Default:CheckIn:Read_GPS] Stopped
2018-05-17T16:22:30.144Z,1526574150.144 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2018-05-17T16:22:30.144Z,1526574150.144 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2018-05-17T16:22:30.144Z,1526574150.144 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2018-05-17T16:22:30.145Z,1526574150.145 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2018-05-17T16:22:30.145Z,1526574150.145 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2018-05-17T16:22:30.145Z,1526574150.145 [BuoyancyServo](INFO): Powering down
2018-05-17T16:22:30.159Z,1526574150.159 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2018-05-17T16:22:30.159Z,1526574150.159 [ElevatorServo](INFO): Powering down
2018-05-17T16:22:30.160Z,1526574150.160 [MassServo](DEBUG): Uninitialize Mass Servo.
2018-05-17T16:22:30.160Z,1526574150.160 [MassServo](INFO): Powering down
2018-05-17T16:22:30.160Z,1526574150.160 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2018-05-17T16:22:30.160Z,1526574150.160 [RudderServo](INFO): Powering down
2018-05-17T16:22:30.161Z,1526574150.161 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2018-05-17T16:22:30.161Z,1526574150.161 [ThrusterServo](INFO): Powering down
2018-05-17T16:22:30.162Z,1526574150.162 [SBIT](DEBUG): Uninitialize SBIT Component.
2018-05-17T16:22:30.163Z,1526574150.163 [IBIT](DEBUG): Uninitialize IBIT Component.
2018-05-17T16:22:30.163Z,1526574150.163 [CBIT](DEBUG): Uninitialize CBIT Component.
2018-05-17T16:22:30.164Z,1526574150.164 [controlThread ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:30.273Z,1526574150.273 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:30.314Z,1526574150.314 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:30.317Z,1526574150.317 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:30.320Z,1526574150.320 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:30.347Z,1526574150.347 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2018-05-17T16:22:30.396Z,1526574150.396 [logger ThreadHandler](INFO): Thread cancelled.