2015-09-29T15:50:03.447Z,1443541803.447 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T15:50:03.453Z,1443541803.453 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T15:50:03.453Z,1443541803.453 [SyncHandler](INFO): Protected caller Thread ID is 762
2015-09-29T15:50:03.454Z,1443541803.454 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T15:50:03.456Z,1443541803.456 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T15:50:03.457Z,1443541803.457 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T15:50:03.460Z,1443541803.460 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T15:50:03.472Z,1443541803.472 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T15:50:03.476Z,1443541803.476 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T15:50:03.477Z,1443541803.477 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T15:50:03.478Z,1443541803.478 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T15:50:03.480Z,1443541803.480 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T15:50:03.481Z,1443541803.481 [logger ThreadHandler](INFO): Protected caller Thread ID is 765
2015-09-29T15:50:03.483Z,1443541803.483 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T15:50:03.483Z,1443541803.483 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T15:50:03.487Z,1443541803.487 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T15:50:03.882Z,1443541803.882 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T15:50:03.884Z,1443541803.884 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T15:50:04.077Z,1443541804.077 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T15:50:04.079Z,1443541804.079 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T15:50:04.225Z,1443541804.225 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T15:50:04.226Z,1443541804.226 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T15:50:04.373Z,1443541804.373 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T15:50:04.374Z,1443541804.374 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T15:50:04.468Z,1443541804.468 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T15:50:04.689Z,1443541804.689 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T15:50:04.690Z,1443541804.690 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T15:50:04.785Z,1443541804.785 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T15:50:04.786Z,1443541804.786 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T15:50:05.101Z,1443541805.101 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T15:50:05.102Z,1443541805.102 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T15:50:05.498Z,1443541805.498 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T15:50:05.498Z,1443541805.498 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T15:50:05.850Z,1443541805.850 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T15:50:05.852Z,1443541805.852 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T15:50:06.450Z,1443541806.450 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T15:50:06.451Z,1443541806.451 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T15:50:06.682Z,1443541806.682 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T15:50:06.682Z,1443541806.682 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T15:50:06.796Z,1443541806.796 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T15:50:06.797Z,1443541806.797 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T15:50:07.336Z,1443541807.336 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T15:50:07.337Z,1443541807.337 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T15:50:07.462Z,1443541807.462 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T15:50:07.464Z,1443541807.464 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T15:50:07.465Z,1443541807.465 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T15:50:07.470Z,1443541807.470 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T15:50:07.544Z,1443541807.544 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T15:50:07.680Z,1443541807.680 [VerticalControl] Loaded
2015-09-29T15:50:07.680Z,1443541807.680 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T15:50:07.685Z,1443541807.685 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T15:50:07.762Z,1443541807.762 [HorizontalControl] Loaded
2015-09-29T15:50:07.762Z,1443541807.762 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T15:50:07.763Z,1443541807.763 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T15:50:07.773Z,1443541807.773 [SpeedControl] Loaded
2015-09-29T15:50:07.773Z,1443541807.773 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T15:50:07.774Z,1443541807.774 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T15:50:07.775Z,1443541807.775 [LoopControl] Loaded
2015-09-29T15:50:07.775Z,1443541807.775 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T15:50:07.775Z,1443541807.775 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T15:50:07.776Z,1443541807.776 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T15:50:07.932Z,1443541807.932 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T15:50:07.948Z,1443541807.948 [SBIT] Loaded
2015-09-29T15:50:07.949Z,1443541807.949 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T15:50:07.949Z,1443541807.949 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T15:50:07.983Z,1443541807.983 [IBIT] Loaded
2015-09-29T15:50:07.984Z,1443541807.984 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T15:50:07.986Z,1443541807.986 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T15:50:08.142Z,1443541808.142 [CBIT] Loaded
2015-09-29T15:50:08.142Z,1443541808.142 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T15:50:08.142Z,1443541808.142 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T15:50:08.143Z,1443541808.143 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T15:50:08.184Z,1443541808.184 [DepthRateCalculator] Loaded
2015-09-29T15:50:08.184Z,1443541808.184 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T15:50:08.190Z,1443541808.190 [PitchRateCalculator] Loaded
2015-09-29T15:50:08.190Z,1443541808.190 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T15:50:08.206Z,1443541808.206 [SpeedCalculator] Loaded
2015-09-29T15:50:08.206Z,1443541808.206 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T15:50:08.224Z,1443541808.224 [TempGradientCalculator] Loaded
2015-09-29T15:50:08.224Z,1443541808.224 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T15:50:08.245Z,1443541808.245 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T15:50:08.246Z,1443541808.246 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T15:50:08.251Z,1443541808.251 [YawRateCalculator] Loaded
2015-09-29T15:50:08.251Z,1443541808.251 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T15:50:08.252Z,1443541808.252 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T15:50:08.253Z,1443541808.253 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T15:50:08.376Z,1443541808.376 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T15:50:08.376Z,1443541808.376 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T15:50:08.376Z,1443541808.376 [StratificationFrontDetector] Loaded
2015-09-29T15:50:08.377Z,1443541808.377 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T15:50:08.377Z,1443541808.377 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T15:50:08.378Z,1443541808.378 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T15:50:08.670Z,1443541808.670 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T15:50:08.671Z,1443541808.671 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T15:50:08.804Z,1443541808.804 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T15:50:08.804Z,1443541808.804 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T15:50:08.865Z,1443541808.865 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T15:50:08.866Z,1443541808.866 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T15:50:08.887Z,1443541808.887 [NavChart] Loaded
2015-09-29T15:50:08.888Z,1443541808.888 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T15:50:08.893Z,1443541808.893 [UniversalFixResidualReporter] Loaded
2015-09-29T15:50:08.893Z,1443541808.893 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T15:50:08.894Z,1443541808.894 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T15:50:08.894Z,1443541808.894 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T15:50:08.903Z,1443541808.903 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T15:50:08.904Z,1443541808.904 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T15:50:09.194Z,1443541809.194 [CTD_NeilBrown] Loaded
2015-09-29T15:50:09.195Z,1443541809.195 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T15:50:09.196Z,1443541809.196 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T15:50:09.197Z,1443541809.197 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T15:50:09.210Z,1443541809.210 [ISUS] Loaded
2015-09-29T15:50:09.210Z,1443541809.210 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T15:50:09.229Z,1443541809.229 [PAR_Licor] Loaded
2015-09-29T15:50:09.229Z,1443541809.229 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T15:50:09.285Z,1443541809.285 [WetLabsBB2FL] Loaded
2015-09-29T15:50:09.286Z,1443541809.286 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T15:50:09.288Z,1443541809.288 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T15:50:09.289Z,1443541809.289 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T15:50:09.289Z,1443541809.289 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T15:50:09.290Z,1443541809.290 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T15:50:10.023Z,1443541810.023 [AHRS_sp3003D] Loaded
2015-09-29T15:50:10.023Z,1443541810.023 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T15:50:10.222Z,1443541810.222 [DataOverHttps] Loaded
2015-09-29T15:50:10.223Z,1443541810.223 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T15:50:10.236Z,1443541810.236 [Depth_Keller] Loaded
2015-09-29T15:50:10.237Z,1443541810.237 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T15:50:10.242Z,1443541810.242 [DropWeight] Loaded
2015-09-29T15:50:10.242Z,1443541810.242 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T15:50:10.399Z,1443541810.399 [DVL_micro] Loaded
2015-09-29T15:50:10.399Z,1443541810.399 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T15:50:10.504Z,1443541810.504 [NAL9602] Loaded
2015-09-29T15:50:10.505Z,1443541810.505 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T15:50:10.552Z,1443541810.552 [Onboard] Loaded
2015-09-29T15:50:10.552Z,1443541810.552 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T15:50:10.568Z,1443541810.568 [Radio_Surface] Loaded
2015-09-29T15:50:10.568Z,1443541810.568 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T15:50:10.572Z,1443541810.572 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T15:50:10.573Z,1443541810.573 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T15:50:10.733Z,1443541810.733 [DAT] Loaded
2015-09-29T15:50:10.733Z,1443541810.733 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T15:50:10.740Z,1443541810.740 [SCPI] Loaded
2015-09-29T15:50:10.740Z,1443541810.740 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T15:50:10.741Z,1443541810.741 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T15:50:10.741Z,1443541810.741 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T15:50:10.872Z,1443541810.872 [BuoyancyServo] Loaded
2015-09-29T15:50:10.872Z,1443541810.872 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T15:50:10.889Z,1443541810.889 [ElevatorServo] Loaded
2015-09-29T15:50:10.890Z,1443541810.890 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T15:50:10.901Z,1443541810.901 [MassServo] Loaded
2015-09-29T15:50:10.902Z,1443541810.902 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T15:50:10.914Z,1443541810.914 [RudderServo] Loaded
2015-09-29T15:50:10.914Z,1443541810.914 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T15:50:10.930Z,1443541810.930 [ThrusterServo] Loaded
2015-09-29T15:50:10.930Z,1443541810.930 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T15:50:10.930Z,1443541810.930 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T15:50:10.931Z,1443541810.931 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T15:50:11.134Z,1443541811.134 [InternalSim] Loaded
2015-09-29T15:50:11.134Z,1443541811.134 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T15:50:11.135Z,1443541811.135 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T15:50:11.135Z,1443541811.135 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T15:50:11.178Z,1443541811.178 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T15:50:11.183Z,1443541811.183 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T15:50:11.184Z,1443541811.184 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T15:50:11.195Z,1443541811.195 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T15:50:11.197Z,1443541811.197 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T15:50:11.197Z,1443541811.197 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 814
2015-09-29T15:50:11.202Z,1443541811.202 [Supervisor](INFO): Main Thread ID is 761
2015-09-29T15:50:11.202Z,1443541811.202 [Supervisor](DEBUG): Running supervisor.
2015-09-29T15:50:11.203Z,1443541811.203 [CommandLine ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T15:50:11.209Z,1443541811.209 [controlThread ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T15:50:11.209Z,1443541811.209 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T15:50:11.210Z,1443541811.210 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T15:50:11.212Z,1443541811.212 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T15:50:11.213Z,1443541811.213 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T15:50:11.214Z,1443541811.214 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T15:50:11.214Z,1443541811.214 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T15:50:11.214Z,1443541811.214 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T15:50:11.216Z,1443541811.216 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T15:50:11.216Z,1443541811.216 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T15:50:11.217Z,1443541811.217 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T15:50:11.218Z,1443541811.218 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T15:50:11.219Z,1443541811.219 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T15:50:11.219Z,1443541811.219 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T15:50:11.219Z,1443541811.219 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T15:50:11.219Z,1443541811.219 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T15:50:11.220Z,1443541811.220 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T15:50:11.220Z,1443541811.220 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T15:50:11.220Z,1443541811.220 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T15:50:11.221Z,1443541811.221 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T15:50:11.221Z,1443541811.221 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T15:50:11.222Z,1443541811.222 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T15:50:11.223Z,1443541811.223 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T15:50:11.223Z,1443541811.223 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T15:50:11.223Z,1443541811.223 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T15:50:11.224Z,1443541811.224 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T15:50:11.224Z,1443541811.224 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T15:50:11.225Z,1443541811.225 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T15:50:11.225Z,1443541811.225 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T15:50:11.230Z,1443541811.230 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T15:50:11.265Z,1443541811.265 [logger ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T15:50:11.353Z,1443541811.353 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T15:50:11.365Z,1443541811.365 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T15:50:11.435Z,1443541811.435 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T15:50:11.445Z,1443541811.445 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T15:50:11.458Z,1443541811.458 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T15:50:11.467Z,1443541811.467 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T15:50:11.474Z,1443541811.474 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T15:50:11.475Z,1443541811.475 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T15:50:11.475Z,1443541811.475 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T15:50:11.475Z,1443541811.475 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T15:50:11.475Z,1443541811.475 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T15:50:11.476Z,1443541811.476 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T15:50:11.476Z,1443541811.476 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T15:50:11.476Z,1443541811.476 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T15:50:11.520Z,1443541811.520 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T15:50:11.547Z,1443541811.547 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T15:50:11.547Z,1443541811.547 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T15:50:11.622Z,1443541811.622 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T15:50:11.623Z,1443541811.623 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T15:50:11.644Z,1443541811.644 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T15:50:11.671Z,1443541811.671 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T15:50:11.697Z,1443541811.697 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T15:50:11.701Z,1443541811.701 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T15:50:11.710Z,1443541811.710 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T15:50:11.910Z,1443541811.910 [DVL_micro](INFO): Initializing
2015-09-29T15:50:12.083Z,1443541812.083 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T15:50:12.107Z,1443541812.107 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T15:50:12.245Z,1443541812.245 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T15:50:12.251Z,1443541812.251 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T15:50:12.281Z,1443541812.281 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T15:50:12.293Z,1443541812.293 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T15:50:12.306Z,1443541812.306 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T15:50:12.564Z,1443541812.564 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T15:50:12.577Z,1443541812.577 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T15:50:16.141Z,1443541816.141 [CommandLine](IMPORTANT): got command quit
2015-09-29T15:50:17.148Z,1443541817.148 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2015-09-29T15:50:17.148Z,1443541817.148 [CommandLine ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:17.205Z,1443541817.205 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2015-09-29T15:50:17.205Z,1443541817.205 [CommandLine ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:17.206Z,1443541817.206 [CommandLine](INFO): Join timeout helper Thread ID is 823
2015-09-29T15:50:17.228Z,1443541817.228 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2015-09-29T15:50:17.229Z,1443541817.229 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:17.229Z,1443541817.229 [NavChartDb](INFO): Join timeout helper Thread ID is 824
2015-09-29T15:50:18.933Z,1443541818.933 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2015-09-29T15:50:18.933Z,1443541818.933 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:18.952Z,1443541818.952 [ComponentRegistry](INFO): Shutting down Radio_Surface ThreadHandler
2015-09-29T15:50:18.953Z,1443541818.953 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:18.953Z,1443541818.953 [Radio_Surface](INFO): Join timeout helper Thread ID is 825
2015-09-29T15:50:19.117Z,1443541819.117 [Radio_Surface ThreadHandler](INFO): Uninitializing protected caller thread.
2015-09-29T15:50:19.117Z,1443541819.117 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:19.128Z,1443541819.128 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2015-09-29T15:50:19.129Z,1443541819.129 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:19.129Z,1443541819.129 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 826
2015-09-29T15:50:19.181Z,1443541819.181 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2015-09-29T15:50:19.181Z,1443541819.181 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:19.185Z,1443541819.185 [ComponentRegistry](INFO): Shutting down CTD_NeilBrown ThreadHandler
2015-09-29T15:50:19.185Z,1443541819.185 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:19.185Z,1443541819.185 [CTD_NeilBrown](INFO): Join timeout helper Thread ID is 827
2015-09-29T15:50:19.313Z,1443541819.313 [CTD_NeilBrown ThreadHandler](INFO): Uninitializing protected caller thread.
2015-09-29T15:50:19.313Z,1443541819.313 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:19.326Z,1443541819.326 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2015-09-29T15:50:19.326Z,1443541819.326 [logger ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:19.326Z,1443541819.326 [logger](INFO): Join timeout helper Thread ID is 828
2015-09-29T15:50:19.365Z,1443541819.365 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2015-09-29T15:50:19.365Z,1443541819.365 [logger ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:19.373Z,1443541819.373 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2015-09-29T15:50:19.373Z,1443541819.373 [CommandLine ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:19.374Z,1443541819.374 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2015-09-29T15:50:19.374Z,1443541819.374 [controlThread ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:19.374Z,1443541819.374 [controlThread](INFO): Join timeout helper Thread ID is 829
2015-09-29T15:50:19.981Z,1443541819.981 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:50:19.000Z,1443541820.000 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2015-09-29T15:50:20.000Z,1443541820.000 [controlThread](DEBUG): Uninitializing ControlThread
2015-09-29T15:50:20.004Z,1443541820.004 [DVL_micro](INFO): uninitialize:Powering down
2015-09-29T15:50:20.005Z,1443541820.005 [NAL9602](INFO): Powering down
2015-09-29T15:50:20.006Z,1443541820.006 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T15:50:20.008Z,1443541820.008 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2015-09-29T15:50:20.011Z,1443541820.011 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2015-09-29T15:50:20.011Z,1443541820.011 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2015-09-29T15:50:20.011Z,1443541820.011 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2015-09-29T15:50:20.012Z,1443541820.012 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2015-09-29T15:50:20.012Z,1443541820.012 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2015-09-29T15:50:20.012Z,1443541820.012 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2015-09-29T15:50:20.013Z,1443541820.013 [MassServo](DEBUG): Uninitialize Mass Servo.
2015-09-29T15:50:20.013Z,1443541820.013 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2015-09-29T15:50:20.013Z,1443541820.013 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2015-09-29T15:50:20.014Z,1443541820.014 [SBIT](DEBUG): Uninitialize SBIT Component.
2015-09-29T15:50:20.014Z,1443541820.014 [IBIT](DEBUG): Uninitialize IBIT Component.
2015-09-29T15:50:20.014Z,1443541820.014 [CBIT](DEBUG): Uninitialize CBIT Component.
2015-09-29T15:50:20.015Z,1443541820.015 [controlThread ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:20.067Z,1443541820.067 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:20.072Z,1443541820.072 [CTD_NeilBrown ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:20.081Z,1443541820.081 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:20.126Z,1443541820.126 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2015-09-29T15:50:20.171Z,1443541820.171 [logger ThreadHandler](INFO): Thread cancelled.