2015-09-29T15:26:04.803Z,1443540364.803 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T15:26:04.807Z,1443540364.807 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T15:26:04.807Z,1443540364.807 [SyncHandler](INFO): Protected caller Thread ID is 763
2015-09-29T15:26:04.808Z,1443540364.808 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T15:26:04.813Z,1443540364.813 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T15:26:04.813Z,1443540364.813 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T15:26:04.816Z,1443540364.816 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T15:26:04.828Z,1443540364.828 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T15:26:04.833Z,1443540364.833 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T15:26:04.833Z,1443540364.833 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 765
2015-09-29T15:26:04.834Z,1443540364.834 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T15:26:04.837Z,1443540364.837 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T15:26:04.837Z,1443540364.837 [logger ThreadHandler](INFO): Protected caller Thread ID is 766
2015-09-29T15:26:04.839Z,1443540364.839 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T15:26:04.840Z,1443540364.840 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T15:26:04.843Z,1443540364.843 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T15:26:05.234Z,1443540365.234 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T15:26:05.236Z,1443540365.236 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T15:26:05.429Z,1443540365.429 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T15:26:05.431Z,1443540365.431 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T15:26:05.577Z,1443540365.577 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T15:26:05.578Z,1443540365.578 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T15:26:05.729Z,1443540365.729 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T15:26:05.730Z,1443540365.730 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T15:26:05.829Z,1443540365.829 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T15:26:06.049Z,1443540366.049 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T15:26:06.050Z,1443540366.050 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T15:26:06.146Z,1443540366.146 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T15:26:06.146Z,1443540366.146 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T15:26:06.458Z,1443540366.458 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T15:26:06.458Z,1443540366.458 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T15:26:06.858Z,1443540366.858 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T15:26:06.859Z,1443540366.859 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T15:26:07.210Z,1443540367.210 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T15:26:07.212Z,1443540367.212 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T15:26:07.806Z,1443540367.806 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T15:26:07.807Z,1443540367.807 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T15:26:08.040Z,1443540368.040 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T15:26:08.041Z,1443540368.041 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T15:26:08.156Z,1443540368.156 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T15:26:08.157Z,1443540368.157 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T15:26:08.669Z,1443540368.669 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T15:26:08.670Z,1443540368.670 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T15:26:08.848Z,1443540368.848 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T15:26:08.850Z,1443540368.850 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T15:26:08.850Z,1443540368.850 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T15:26:08.855Z,1443540368.855 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T15:26:08.929Z,1443540368.929 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T15:26:09.062Z,1443540369.062 [VerticalControl] Loaded
2015-09-29T15:26:09.062Z,1443540369.062 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T15:26:09.063Z,1443540369.063 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T15:26:09.143Z,1443540369.143 [HorizontalControl] Loaded
2015-09-29T15:26:09.143Z,1443540369.143 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T15:26:09.144Z,1443540369.144 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T15:26:09.154Z,1443540369.154 [SpeedControl] Loaded
2015-09-29T15:26:09.154Z,1443540369.154 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T15:26:09.155Z,1443540369.155 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T15:26:09.155Z,1443540369.155 [LoopControl] Loaded
2015-09-29T15:26:09.156Z,1443540369.156 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T15:26:09.156Z,1443540369.156 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T15:26:09.157Z,1443540369.157 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T15:26:09.315Z,1443540369.315 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T15:26:09.327Z,1443540369.327 [SBIT] Loaded
2015-09-29T15:26:09.327Z,1443540369.327 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T15:26:09.328Z,1443540369.328 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T15:26:09.361Z,1443540369.361 [IBIT] Loaded
2015-09-29T15:26:09.362Z,1443540369.362 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T15:26:09.364Z,1443540369.364 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T15:26:09.518Z,1443540369.518 [CBIT] Loaded
2015-09-29T15:26:09.519Z,1443540369.519 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T15:26:09.519Z,1443540369.519 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T15:26:09.520Z,1443540369.520 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T15:26:09.561Z,1443540369.561 [DepthRateCalculator] Loaded
2015-09-29T15:26:09.561Z,1443540369.561 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T15:26:09.567Z,1443540369.567 [PitchRateCalculator] Loaded
2015-09-29T15:26:09.567Z,1443540369.567 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T15:26:09.579Z,1443540369.579 [SpeedCalculator] Loaded
2015-09-29T15:26:09.579Z,1443540369.579 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T15:26:09.600Z,1443540369.600 [TempGradientCalculator] Loaded
2015-09-29T15:26:09.600Z,1443540369.600 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T15:26:09.617Z,1443540369.617 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T15:26:09.618Z,1443540369.618 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T15:26:09.623Z,1443540369.623 [YawRateCalculator] Loaded
2015-09-29T15:26:09.623Z,1443540369.623 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T15:26:09.623Z,1443540369.623 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T15:26:09.624Z,1443540369.624 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T15:26:09.745Z,1443540369.745 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T15:26:09.745Z,1443540369.745 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T15:26:09.746Z,1443540369.746 [StratificationFrontDetector] Loaded
2015-09-29T15:26:09.746Z,1443540369.746 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T15:26:09.746Z,1443540369.746 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T15:26:09.747Z,1443540369.747 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T15:26:10.039Z,1443540370.039 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T15:26:10.040Z,1443540370.040 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T15:26:10.178Z,1443540370.178 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T15:26:10.178Z,1443540370.178 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T15:26:10.242Z,1443540370.242 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T15:26:10.242Z,1443540370.242 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T15:26:10.260Z,1443540370.260 [NavChart] Loaded
2015-09-29T15:26:10.260Z,1443540370.260 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T15:26:10.265Z,1443540370.265 [UniversalFixResidualReporter] Loaded
2015-09-29T15:26:10.266Z,1443540370.266 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T15:26:10.266Z,1443540370.266 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T15:26:10.267Z,1443540370.267 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T15:26:10.275Z,1443540370.275 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T15:26:10.276Z,1443540370.276 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T15:26:10.565Z,1443540370.565 [CTD_NeilBrown] Loaded
2015-09-29T15:26:10.566Z,1443540370.566 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T15:26:10.569Z,1443540370.569 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T15:26:10.569Z,1443540370.569 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T15:26:10.582Z,1443540370.582 [ISUS] Loaded
2015-09-29T15:26:10.582Z,1443540370.582 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T15:26:10.601Z,1443540370.601 [PAR_Licor] Loaded
2015-09-29T15:26:10.601Z,1443540370.601 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T15:26:10.656Z,1443540370.656 [WetLabsBB2FL] Loaded
2015-09-29T15:26:10.657Z,1443540370.657 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T15:26:10.661Z,1443540370.661 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T15:26:10.661Z,1443540370.661 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T15:26:10.662Z,1443540370.662 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T15:26:10.662Z,1443540370.662 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T15:26:11.401Z,1443540371.401 [AHRS_sp3003D] Loaded
2015-09-29T15:26:11.402Z,1443540371.402 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T15:26:11.592Z,1443540371.592 [DataOverHttps] Loaded
2015-09-29T15:26:11.592Z,1443540371.592 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T15:26:11.605Z,1443540371.605 [Depth_Keller] Loaded
2015-09-29T15:26:11.606Z,1443540371.606 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T15:26:11.615Z,1443540371.615 [DropWeight] Loaded
2015-09-29T15:26:11.615Z,1443540371.615 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T15:26:11.771Z,1443540371.771 [DVL_micro] Loaded
2015-09-29T15:26:11.771Z,1443540371.771 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T15:26:11.875Z,1443540371.875 [NAL9602] Loaded
2015-09-29T15:26:11.875Z,1443540371.875 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T15:26:11.925Z,1443540371.925 [Onboard] Loaded
2015-09-29T15:26:11.926Z,1443540371.926 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T15:26:11.937Z,1443540371.937 [Radio_Surface] Loaded
2015-09-29T15:26:11.938Z,1443540371.938 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T15:26:11.941Z,1443540371.941 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T15:26:11.941Z,1443540371.941 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 814
2015-09-29T15:26:12.099Z,1443540372.099 [DAT] Loaded
2015-09-29T15:26:12.100Z,1443540372.100 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T15:26:12.106Z,1443540372.106 [SCPI] Loaded
2015-09-29T15:26:12.107Z,1443540372.107 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T15:26:12.107Z,1443540372.107 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T15:26:12.108Z,1443540372.108 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T15:26:12.238Z,1443540372.238 [BuoyancyServo] Loaded
2015-09-29T15:26:12.238Z,1443540372.238 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T15:26:12.255Z,1443540372.255 [ElevatorServo] Loaded
2015-09-29T15:26:12.255Z,1443540372.255 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T15:26:12.267Z,1443540372.267 [MassServo] Loaded
2015-09-29T15:26:12.267Z,1443540372.267 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T15:26:12.279Z,1443540372.279 [RudderServo] Loaded
2015-09-29T15:26:12.279Z,1443540372.279 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T15:26:12.294Z,1443540372.294 [ThrusterServo] Loaded
2015-09-29T15:26:12.295Z,1443540372.295 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T15:26:12.295Z,1443540372.295 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T15:26:12.296Z,1443540372.296 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T15:26:12.488Z,1443540372.488 [InternalSim] Loaded
2015-09-29T15:26:12.488Z,1443540372.488 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T15:26:12.489Z,1443540372.489 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T15:26:12.489Z,1443540372.489 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T15:26:12.536Z,1443540372.536 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T15:26:12.540Z,1443540372.540 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T15:26:12.541Z,1443540372.541 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T15:26:12.552Z,1443540372.552 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T15:26:12.557Z,1443540372.557 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T15:26:12.557Z,1443540372.557 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 815
2015-09-29T15:26:12.562Z,1443540372.562 [Supervisor](INFO): Main Thread ID is 762
2015-09-29T15:26:12.562Z,1443540372.562 [Supervisor](DEBUG): Running supervisor.
2015-09-29T15:26:12.563Z,1443540372.563 [CommandLine ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T15:26:12.569Z,1443540372.569 [controlThread ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T15:26:12.570Z,1443540372.570 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T15:26:12.570Z,1443540372.570 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T15:26:12.572Z,1443540372.572 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T15:26:12.573Z,1443540372.573 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T15:26:12.574Z,1443540372.574 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T15:26:12.574Z,1443540372.574 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T15:26:12.575Z,1443540372.575 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T15:26:12.576Z,1443540372.576 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T15:26:12.576Z,1443540372.576 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T15:26:12.577Z,1443540372.577 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T15:26:12.578Z,1443540372.578 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T15:26:12.579Z,1443540372.579 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T15:26:12.579Z,1443540372.579 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T15:26:12.579Z,1443540372.579 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T15:26:12.579Z,1443540372.579 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T15:26:12.580Z,1443540372.580 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T15:26:12.580Z,1443540372.580 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T15:26:12.580Z,1443540372.580 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T15:26:12.581Z,1443540372.581 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T15:26:12.581Z,1443540372.581 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T15:26:12.582Z,1443540372.582 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T15:26:12.583Z,1443540372.583 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T15:26:12.583Z,1443540372.583 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T15:26:12.583Z,1443540372.583 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T15:26:12.584Z,1443540372.584 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T15:26:12.584Z,1443540372.584 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T15:26:12.585Z,1443540372.585 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T15:26:12.585Z,1443540372.585 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T15:26:12.590Z,1443540372.590 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T15:26:12.626Z,1443540372.626 [logger ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T15:26:12.675Z,1443540372.675 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T15:26:12.681Z,1443540372.681 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T15:26:12.693Z,1443540372.693 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T15:26:12.757Z,1443540372.757 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 822
2015-09-29T15:26:12.766Z,1443540372.766 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T15:26:12.769Z,1443540372.769 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T15:26:12.769Z,1443540372.769 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T15:26:12.769Z,1443540372.769 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T15:26:12.769Z,1443540372.769 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T15:26:12.770Z,1443540372.770 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T15:26:12.770Z,1443540372.770 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T15:26:12.770Z,1443540372.770 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T15:26:12.770Z,1443540372.770 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T15:26:12.800Z,1443540372.800 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T15:26:12.837Z,1443540372.837 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T15:26:12.901Z,1443540372.901 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T15:26:12.902Z,1443540372.902 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T15:26:12.948Z,1443540372.948 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T15:26:12.949Z,1443540372.949 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T15:26:12.984Z,1443540372.984 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T15:26:12.999Z,1443540372.999 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T15:26:13.018Z,1443540373.018 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T15:26:13.021Z,1443540373.021 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T15:26:13.042Z,1443540373.042 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T15:26:13.289Z,1443540373.289 [DVL_micro](INFO): Initializing
2015-09-29T15:26:13.449Z,1443540373.449 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T15:26:13.461Z,1443540373.461 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T15:26:13.561Z,1443540373.561 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T15:26:13.575Z,1443540373.575 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T15:26:13.597Z,1443540373.597 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T15:26:13.613Z,1443540373.613 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T15:26:13.622Z,1443540373.622 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T15:26:13.871Z,1443540373.871 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T15:26:13.872Z,1443540373.872 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T15:26:22.946Z,1443540382.946 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:23.272Z,1443540383.272 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:23.412Z,1443540383.412 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:23.817Z,1443540383.817 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003200
2015-09-29T15:26:23.821Z,1443540383.821 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:24.210Z,1443540384.210 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:24.610Z,1443540384.610 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:25.010Z,1443540385.010 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:25.410Z,1443540385.410 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:25.809Z,1443540385.809 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:26.209Z,1443540386.209 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:26.609Z,1443540386.609 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:27.010Z,1443540387.010 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:27.409Z,1443540387.409 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:27.815Z,1443540387.815 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:28.214Z,1443540388.214 [NAL9602](INFO): No messages in MT queue
2015-09-29T15:26:28.215Z,1443540388.215 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:28.615Z,1443540388.615 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:29.015Z,1443540389.015 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:29.416Z,1443540389.416 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:29.815Z,1443540389.815 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:30.213Z,1443540390.213 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:30.619Z,1443540390.619 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:31.015Z,1443540391.015 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:31.414Z,1443540391.414 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:31.815Z,1443540391.815 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:32.220Z,1443540392.220 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:32.619Z,1443540392.619 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:33.015Z,1443540393.015 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:33.028Z,1443540393.028 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T15:26:33.419Z,1443540393.419 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:33.816Z,1443540393.816 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:34.213Z,1443540394.213 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:34.619Z,1443540394.619 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:35.019Z,1443540395.019 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:35.419Z,1443540395.419 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:35.819Z,1443540395.819 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:36.220Z,1443540396.220 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:36.619Z,1443540396.619 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:37.019Z,1443540397.019 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T15:26:37.419Z,1443540397.419 [D