2015-09-29T14:54:31.310Z,1443538471.310 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T14:54:31.313Z,1443538471.313 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T14:54:31.313Z,1443538471.313 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T14:54:31.314Z,1443538471.314 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T14:54:31.315Z,1443538471.315 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T14:54:31.316Z,1443538471.316 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T14:54:31.319Z,1443538471.319 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T14:54:31.332Z,1443538471.332 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T14:54:31.335Z,1443538471.335 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T14:54:31.336Z,1443538471.336 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T14:54:31.337Z,1443538471.337 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T14:54:31.339Z,1443538471.339 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T14:54:31.340Z,1443538471.340 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T14:54:31.342Z,1443538471.342 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T14:54:31.342Z,1443538471.342 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T14:54:31.346Z,1443538471.346 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T14:54:31.769Z,1443538471.769 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T14:54:31.771Z,1443538471.771 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T14:54:31.976Z,1443538471.976 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T14:54:31.978Z,1443538471.978 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T14:54:32.127Z,1443538472.127 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T14:54:32.128Z,1443538472.128 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T14:54:32.280Z,1443538472.280 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T14:54:32.281Z,1443538472.281 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T14:54:32.380Z,1443538472.380 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T14:54:32.612Z,1443538472.612 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T14:54:32.613Z,1443538472.613 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T14:54:32.712Z,1443538472.712 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T14:54:32.713Z,1443538472.713 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T14:54:33.043Z,1443538473.043 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T14:54:33.044Z,1443538473.044 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T14:54:33.469Z,1443538473.469 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T14:54:33.469Z,1443538473.469 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T14:54:33.845Z,1443538473.845 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T14:54:33.847Z,1443538473.847 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T14:54:34.477Z,1443538474.477 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T14:54:34.478Z,1443538474.478 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T14:54:34.728Z,1443538474.728 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T14:54:34.729Z,1443538474.729 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T14:54:34.884Z,1443538474.884 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T14:54:34.885Z,1443538474.885 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T14:54:35.429Z,1443538475.429 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T14:54:35.429Z,1443538475.429 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T14:54:35.550Z,1443538475.550 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T14:54:35.552Z,1443538475.552 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T14:54:35.552Z,1443538475.552 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T14:54:35.558Z,1443538475.558 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T14:54:35.634Z,1443538475.634 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T14:54:35.773Z,1443538475.773 [VerticalControl] Loaded
2015-09-29T14:54:35.773Z,1443538475.773 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T14:54:35.774Z,1443538475.774 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T14:54:35.858Z,1443538475.858 [HorizontalControl] Loaded
2015-09-29T14:54:35.858Z,1443538475.858 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T14:54:35.859Z,1443538475.859 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T14:54:35.869Z,1443538475.869 [SpeedControl] Loaded
2015-09-29T14:54:35.869Z,1443538475.869 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T14:54:35.870Z,1443538475.870 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T14:54:35.870Z,1443538475.870 [LoopControl] Loaded
2015-09-29T14:54:35.871Z,1443538475.871 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T14:54:35.871Z,1443538475.871 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T14:54:35.872Z,1443538475.872 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T14:54:36.034Z,1443538476.034 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T14:54:36.046Z,1443538476.046 [SBIT] Loaded
2015-09-29T14:54:36.046Z,1443538476.046 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T14:54:36.047Z,1443538476.047 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T14:54:36.082Z,1443538476.082 [IBIT] Loaded
2015-09-29T14:54:36.082Z,1443538476.082 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T14:54:36.085Z,1443538476.085 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T14:54:36.244Z,1443538476.244 [CBIT] Loaded
2015-09-29T14:54:36.244Z,1443538476.244 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T14:54:36.244Z,1443538476.244 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T14:54:36.245Z,1443538476.245 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T14:54:36.287Z,1443538476.287 [DepthRateCalculator] Loaded
2015-09-29T14:54:36.287Z,1443538476.287 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T14:54:36.293Z,1443538476.293 [PitchRateCalculator] Loaded
2015-09-29T14:54:36.293Z,1443538476.293 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T14:54:36.309Z,1443538476.309 [SpeedCalculator] Loaded
2015-09-29T14:54:36.309Z,1443538476.309 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T14:54:36.327Z,1443538476.327 [TempGradientCalculator] Loaded
2015-09-29T14:54:36.328Z,1443538476.328 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T14:54:36.345Z,1443538476.345 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T14:54:36.346Z,1443538476.346 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T14:54:36.355Z,1443538476.355 [YawRateCalculator] Loaded
2015-09-29T14:54:36.356Z,1443538476.356 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T14:54:36.356Z,1443538476.356 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T14:54:36.357Z,1443538476.357 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T14:54:36.482Z,1443538476.482 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T14:54:36.483Z,1443538476.483 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T14:54:36.483Z,1443538476.483 [StratificationFrontDetector] Loaded
2015-09-29T14:54:36.483Z,1443538476.483 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T14:54:36.484Z,1443538476.484 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T14:54:36.484Z,1443538476.484 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T14:54:36.782Z,1443538476.782 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T14:54:36.782Z,1443538476.782 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T14:54:36.917Z,1443538476.917 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T14:54:36.918Z,1443538476.918 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T14:54:36.980Z,1443538476.980 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T14:54:36.980Z,1443538476.980 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T14:54:37.003Z,1443538477.003 [NavChart] Loaded
2015-09-29T14:54:37.003Z,1443538477.003 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T14:54:37.009Z,1443538477.009 [UniversalFixResidualReporter] Loaded
2015-09-29T14:54:37.009Z,1443538477.009 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T14:54:37.009Z,1443538477.009 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T14:54:37.010Z,1443538477.010 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T14:54:37.019Z,1443538477.019 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T14:54:37.019Z,1443538477.019 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T14:54:37.331Z,1443538477.331 [CTD_NeilBrown] Loaded
2015-09-29T14:54:37.332Z,1443538477.332 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T14:54:37.335Z,1443538477.335 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T14:54:37.336Z,1443538477.336 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T14:54:37.349Z,1443538477.349 [ISUS] Loaded
2015-09-29T14:54:37.349Z,1443538477.349 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T14:54:37.368Z,1443538477.368 [PAR_Licor] Loaded
2015-09-29T14:54:37.369Z,1443538477.369 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T14:54:37.426Z,1443538477.426 [WetLabsBB2FL] Loaded
2015-09-29T14:54:37.426Z,1443538477.426 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T14:54:37.431Z,1443538477.431 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T14:54:37.432Z,1443538477.432 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T14:54:37.432Z,1443538477.432 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T14:54:37.433Z,1443538477.433 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T14:54:38.168Z,1443538478.168 [AHRS_sp3003D] Loaded
2015-09-29T14:54:38.168Z,1443538478.168 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T14:54:38.363Z,1443538478.363 [DataOverHttps] Loaded
2015-09-29T14:54:38.363Z,1443538478.363 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T14:54:38.381Z,1443538478.381 [Depth_Keller] Loaded
2015-09-29T14:54:38.381Z,1443538478.381 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T14:54:38.387Z,1443538478.387 [DropWeight] Loaded
2015-09-29T14:54:38.387Z,1443538478.387 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T14:54:38.543Z,1443538478.543 [DVL_micro] Loaded
2015-09-29T14:54:38.543Z,1443538478.543 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T14:54:38.654Z,1443538478.654 [NAL9602] Loaded
2015-09-29T14:54:38.654Z,1443538478.654 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T14:54:38.703Z,1443538478.703 [Onboard] Loaded
2015-09-29T14:54:38.703Z,1443538478.703 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T14:54:38.719Z,1443538478.719 [Radio_Surface] Loaded
2015-09-29T14:54:38.719Z,1443538478.719 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T14:54:38.723Z,1443538478.723 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T14:54:38.724Z,1443538478.724 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T14:54:38.888Z,1443538478.888 [DAT] Loaded
2015-09-29T14:54:38.888Z,1443538478.888 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T14:54:38.895Z,1443538478.895 [SCPI] Loaded
2015-09-29T14:54:38.895Z,1443538478.895 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T14:54:38.896Z,1443538478.896 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T14:54:38.897Z,1443538478.897 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T14:54:39.035Z,1443538479.035 [BuoyancyServo] Loaded
2015-09-29T14:54:39.035Z,1443538479.035 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T14:54:39.048Z,1443538479.048 [ElevatorServo] Loaded
2015-09-29T14:54:39.049Z,1443538479.049 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T14:54:39.061Z,1443538479.061 [MassServo] Loaded
2015-09-29T14:54:39.061Z,1443538479.061 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T14:54:39.077Z,1443538479.077 [RudderServo] Loaded
2015-09-29T14:54:39.078Z,1443538479.078 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T14:54:39.089Z,1443538479.089 [ThrusterServo] Loaded
2015-09-29T14:54:39.090Z,1443538479.090 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T14:54:39.090Z,1443538479.090 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T14:54:39.091Z,1443538479.091 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T14:54:39.294Z,1443538479.294 [InternalSim] Loaded
2015-09-29T14:54:39.295Z,1443538479.295 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T14:54:39.299Z,1443538479.299 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T14:54:39.300Z,1443538479.300 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T14:54:39.344Z,1443538479.344 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T14:54:39.348Z,1443538479.348 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T14:54:39.349Z,1443538479.349 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T14:54:39.356Z,1443538479.356 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T14:54:39.359Z,1443538479.359 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T14:54:39.360Z,1443538479.360 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T14:54:39.365Z,1443538479.365 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T14:54:39.365Z,1443538479.365 [Supervisor](DEBUG): Running supervisor.
2015-09-29T14:54:39.366Z,1443538479.366 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T14:54:39.372Z,1443538479.372 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T14:54:39.372Z,1443538479.372 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T14:54:39.373Z,1443538479.373 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T14:54:39.375Z,1443538479.375 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T14:54:39.376Z,1443538479.376 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T14:54:39.376Z,1443538479.376 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T14:54:39.377Z,1443538479.377 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T14:54:39.377Z,1443538479.377 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T14:54:39.379Z,1443538479.379 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T14:54:39.379Z,1443538479.379 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T14:54:39.380Z,1443538479.380 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T14:54:39.380Z,1443538479.380 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T14:54:39.381Z,1443538479.381 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T14:54:39.381Z,1443538479.381 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T14:54:39.382Z,1443538479.382 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T14:54:39.382Z,1443538479.382 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T14:54:39.382Z,1443538479.382 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T14:54:39.383Z,1443538479.383 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T14:54:39.383Z,1443538479.383 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T14:54:39.383Z,1443538479.383 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T14:54:39.384Z,1443538479.384 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T14:54:39.385Z,1443538479.385 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T14:54:39.385Z,1443538479.385 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T14:54:39.386Z,1443538479.386 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T14:54:39.386Z,1443538479.386 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T14:54:39.387Z,1443538479.387 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T14:54:39.387Z,1443538479.387 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T14:54:39.387Z,1443538479.387 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T14:54:39.388Z,1443538479.388 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T14:54:39.393Z,1443538479.393 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T14:54:39.424Z,1443538479.424 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T14:54:39.524Z,1443538479.524 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T14:54:39.525Z,1443538479.525 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T14:54:39.595Z,1443538479.595 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T14:54:39.622Z,1443538479.622 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T14:54:39.633Z,1443538479.633 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T14:54:39.641Z,1443538479.641 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T14:54:39.643Z,1443538479.643 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T14:54:39.643Z,1443538479.643 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T14:54:39.644Z,1443538479.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T14:54:39.644Z,1443538479.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T14:54:39.644Z,1443538479.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T14:54:39.644Z,1443538479.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T14:54:39.645Z,1443538479.645 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T14:54:39.645Z,1443538479.645 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T14:54:39.673Z,1443538479.673 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T14:54:39.683Z,1443538479.683 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T14:54:39.684Z,1443538479.684 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T14:54:39.763Z,1443538479.763 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T14:54:39.764Z,1443538479.764 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T14:54:39.809Z,1443538479.809 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T14:54:39.836Z,1443538479.836 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T14:54:39.842Z,1443538479.842 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T14:54:39.861Z,1443538479.861 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T14:54:39.868Z,1443538479.868 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T14:54:40.111Z,1443538480.111 [DVL_micro](INFO): Initializing
2015-09-29T14:54:40.264Z,1443538480.264 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:54:40.271Z,1443538480.271 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:54:40.385Z,1443538480.385 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T14:54:40.409Z,1443538480.409 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T14:54:40.431Z,1443538480.431 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T14:54:40.437Z,1443538480.437 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T14:54:40.455Z,1443538480.455 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T14:54:40.702Z,1443538480.702 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:54:40.703Z,1443538480.703 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:54:49.691Z,1443538489.691 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:50.063Z,1443538490.063 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:50.175Z,1443538490.175 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:50.559Z,1443538490.559 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T14:54:50.562Z,1443538490.562 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:50.957Z,1443538490.957 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:51.357Z,1443538491.357 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:51.757Z,1443538491.757 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:52.157Z,1443538492.157 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:52.556Z,1443538492.556 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:52.956Z,1443538492.956 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:53.356Z,1443538493.356 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:53.756Z,1443538493.756 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:54.157Z,1443538494.157 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:54.565Z,1443538494.565 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:54.961Z,1443538494.961 [NAL9602](INFO): No messages in MT queue
2015-09-29T14:54:54.962Z,1443538494.962 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:55.361Z,1443538495.361 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:55.763Z,1443538495.763 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:56.162Z,1443538496.162 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:56.566Z,1443538496.566 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:56.961Z,1443538496.961 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:57.361Z,1443538497.361 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:57.761Z,1443538497.761 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:58.161Z,1443538498.161 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:58.561Z,1443538498.561 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:58.964Z,1443538498.964 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:59.356Z,1443538499.356 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:59.756Z,1443538499.756 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:54:59.806Z,1443538499.806 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T14:55:00.156Z,1443538500.156 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:55:00.556Z,1443538500.556 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:55:00.957Z,1443538500.957 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:55:01.357Z,1443538501.357 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:55:01.756Z,1443538501.756 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:55:02.156Z,1443538502.156 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:55:02.557Z,1443538502.557 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:55:02.956Z,1443538502.956 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:55:03.357Z,1443538503.357 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:55:03.756Z,1443538503.756 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:55:04.156Z,1443538504.156 [D