2015-09-29T14:46:31.875Z,1443537991.875 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T14:46:31.878Z,1443537991.878 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T14:46:31.879Z,1443537991.879 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T14:46:31.879Z,1443537991.879 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T14:46:31.883Z,1443537991.883 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T14:46:31.883Z,1443537991.883 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T14:46:31.886Z,1443537991.886 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T14:46:31.899Z,1443537991.899 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T14:46:31.903Z,1443537991.903 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T14:46:31.903Z,1443537991.903 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T14:46:31.904Z,1443537991.904 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T14:46:31.907Z,1443537991.907 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T14:46:31.907Z,1443537991.907 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T14:46:31.910Z,1443537991.910 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T14:46:31.910Z,1443537991.910 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T14:46:31.914Z,1443537991.914 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T14:46:32.313Z,1443537992.313 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T14:46:32.315Z,1443537992.315 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T14:46:32.508Z,1443537992.508 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T14:46:32.510Z,1443537992.510 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T14:46:32.656Z,1443537992.656 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T14:46:32.656Z,1443537992.656 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T14:46:32.804Z,1443537992.804 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T14:46:32.805Z,1443537992.805 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T14:46:32.899Z,1443537992.899 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T14:46:33.120Z,1443537993.120 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T14:46:33.121Z,1443537993.121 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T14:46:33.216Z,1443537993.216 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T14:46:33.216Z,1443537993.216 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T14:46:33.532Z,1443537993.532 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T14:46:33.533Z,1443537993.533 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T14:46:33.932Z,1443537993.932 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T14:46:33.933Z,1443537993.933 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T14:46:34.286Z,1443537994.286 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T14:46:34.288Z,1443537994.288 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T14:46:34.885Z,1443537994.885 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T14:46:34.885Z,1443537994.885 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T14:46:35.116Z,1443537995.116 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T14:46:35.117Z,1443537995.117 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T14:46:35.236Z,1443537995.236 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T14:46:35.237Z,1443537995.237 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T14:46:35.752Z,1443537995.752 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T14:46:35.752Z,1443537995.752 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T14:46:35.917Z,1443537995.917 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T14:46:35.919Z,1443537995.919 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T14:46:35.919Z,1443537995.919 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T14:46:35.924Z,1443537995.924 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T14:46:35.994Z,1443537995.994 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T14:46:36.115Z,1443537996.115 [VerticalControl] Loaded
2015-09-29T14:46:36.116Z,1443537996.116 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T14:46:36.116Z,1443537996.116 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T14:46:36.189Z,1443537996.189 [HorizontalControl] Loaded
2015-09-29T14:46:36.189Z,1443537996.189 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T14:46:36.190Z,1443537996.190 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T14:46:36.196Z,1443537996.196 [SpeedControl] Loaded
2015-09-29T14:46:36.196Z,1443537996.196 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T14:46:36.197Z,1443537996.197 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T14:46:36.197Z,1443537996.197 [LoopControl] Loaded
2015-09-29T14:46:36.197Z,1443537996.197 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T14:46:36.198Z,1443537996.198 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T14:46:36.199Z,1443537996.199 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T14:46:36.344Z,1443537996.344 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T14:46:36.356Z,1443537996.356 [SBIT] Loaded
2015-09-29T14:46:36.357Z,1443537996.357 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T14:46:36.358Z,1443537996.358 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T14:46:36.388Z,1443537996.388 [IBIT] Loaded
2015-09-29T14:46:36.388Z,1443537996.388 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T14:46:36.390Z,1443537996.390 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T14:46:36.528Z,1443537996.528 [CBIT] Loaded
2015-09-29T14:46:36.529Z,1443537996.529 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T14:46:36.529Z,1443537996.529 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T14:46:36.530Z,1443537996.530 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T14:46:36.567Z,1443537996.567 [DepthRateCalculator] Loaded
2015-09-29T14:46:36.567Z,1443537996.567 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T14:46:36.573Z,1443537996.573 [PitchRateCalculator] Loaded
2015-09-29T14:46:36.573Z,1443537996.573 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T14:46:36.584Z,1443537996.584 [SpeedCalculator] Loaded
2015-09-29T14:46:36.585Z,1443537996.585 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T14:46:36.602Z,1443537996.602 [TempGradientCalculator] Loaded
2015-09-29T14:46:36.602Z,1443537996.602 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T14:46:36.619Z,1443537996.619 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T14:46:36.620Z,1443537996.620 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T14:46:36.625Z,1443537996.625 [YawRateCalculator] Loaded
2015-09-29T14:46:36.625Z,1443537996.625 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T14:46:36.626Z,1443537996.626 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T14:46:36.626Z,1443537996.626 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T14:46:36.738Z,1443537996.738 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T14:46:36.738Z,1443537996.738 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T14:46:36.739Z,1443537996.739 [StratificationFrontDetector] Loaded
2015-09-29T14:46:36.739Z,1443537996.739 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T14:46:36.739Z,1443537996.739 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T14:46:36.740Z,1443537996.740 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T14:46:37.004Z,1443537997.004 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T14:46:37.005Z,1443537997.005 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T14:46:37.125Z,1443537997.125 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T14:46:37.125Z,1443537997.125 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T14:46:37.182Z,1443537997.182 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T14:46:37.182Z,1443537997.182 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T14:46:37.200Z,1443537997.200 [NavChart] Loaded
2015-09-29T14:46:37.200Z,1443537997.200 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T14:46:37.205Z,1443537997.205 [UniversalFixResidualReporter] Loaded
2015-09-29T14:46:37.205Z,1443537997.205 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T14:46:37.206Z,1443537997.206 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T14:46:37.207Z,1443537997.207 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T14:46:37.215Z,1443537997.215 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T14:46:37.216Z,1443537997.216 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T14:46:37.500Z,1443537997.500 [CTD_NeilBrown] Loaded
2015-09-29T14:46:37.500Z,1443537997.500 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T14:46:37.501Z,1443537997.501 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T14:46:37.502Z,1443537997.502 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T14:46:37.515Z,1443537997.515 [ISUS] Loaded
2015-09-29T14:46:37.515Z,1443537997.515 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T14:46:37.530Z,1443537997.530 [PAR_Licor] Loaded
2015-09-29T14:46:37.530Z,1443537997.530 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T14:46:37.582Z,1443537997.582 [WetLabsBB2FL] Loaded
2015-09-29T14:46:37.582Z,1443537997.582 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T14:46:37.583Z,1443537997.583 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T14:46:37.583Z,1443537997.583 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T14:46:37.584Z,1443537997.584 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T14:46:37.585Z,1443537997.585 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T14:46:38.230Z,1443537998.230 [AHRS_sp3003D] Loaded
2015-09-29T14:46:38.230Z,1443537998.230 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T14:46:38.399Z,1443537998.399 [DataOverHttps] Loaded
2015-09-29T14:46:38.400Z,1443537998.400 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T14:46:38.413Z,1443537998.413 [Depth_Keller] Loaded
2015-09-29T14:46:38.413Z,1443537998.413 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T14:46:38.418Z,1443537998.418 [DropWeight] Loaded
2015-09-29T14:46:38.419Z,1443537998.419 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T14:46:38.558Z,1443537998.558 [DVL_micro] Loaded
2015-09-29T14:46:38.558Z,1443537998.558 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T14:46:38.654Z,1443537998.654 [NAL9602] Loaded
2015-09-29T14:46:38.655Z,1443537998.655 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T14:46:38.697Z,1443537998.697 [Onboard] Loaded
2015-09-29T14:46:38.698Z,1443537998.698 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T14:46:38.709Z,1443537998.709 [Radio_Surface] Loaded
2015-09-29T14:46:38.709Z,1443537998.709 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T14:46:38.711Z,1443537998.711 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T14:46:38.711Z,1443537998.711 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T14:46:38.854Z,1443537998.854 [DAT] Loaded
2015-09-29T14:46:38.854Z,1443537998.854 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T14:46:38.861Z,1443537998.861 [SCPI] Loaded
2015-09-29T14:46:38.861Z,1443537998.861 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T14:46:38.862Z,1443537998.862 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T14:46:38.862Z,1443537998.862 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T14:46:38.983Z,1443537998.983 [BuoyancyServo] Loaded
2015-09-29T14:46:38.984Z,1443537998.984 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T14:46:38.997Z,1443537998.997 [ElevatorServo] Loaded
2015-09-29T14:46:38.997Z,1443537998.997 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T14:46:39.009Z,1443537999.009 [MassServo] Loaded
2015-09-29T14:46:39.009Z,1443537999.009 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T14:46:39.021Z,1443537999.021 [RudderServo] Loaded
2015-09-29T14:46:39.022Z,1443537999.022 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T14:46:39.033Z,1443537999.033 [ThrusterServo] Loaded
2015-09-29T14:46:39.033Z,1443537999.033 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T14:46:39.034Z,1443537999.034 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T14:46:39.035Z,1443537999.035 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T14:46:39.216Z,1443537999.216 [InternalSim] Loaded
2015-09-29T14:46:39.216Z,1443537999.216 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T14:46:39.217Z,1443537999.217 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T14:46:39.218Z,1443537999.218 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T14:46:39.257Z,1443537999.257 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T14:46:39.261Z,1443537999.261 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T14:46:39.262Z,1443537999.262 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T14:46:39.268Z,1443537999.268 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T14:46:39.269Z,1443537999.269 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T14:46:39.270Z,1443537999.270 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T14:46:39.275Z,1443537999.275 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T14:46:39.275Z,1443537999.275 [Supervisor](DEBUG): Running supervisor.
2015-09-29T14:46:39.275Z,1443537999.275 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T14:46:39.278Z,1443537999.278 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T14:46:39.279Z,1443537999.279 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T14:46:39.280Z,1443537999.280 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T14:46:39.281Z,1443537999.281 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T14:46:39.282Z,1443537999.282 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T14:46:39.283Z,1443537999.283 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T14:46:39.283Z,1443537999.283 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T14:46:39.284Z,1443537999.284 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T14:46:39.285Z,1443537999.285 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T14:46:39.285Z,1443537999.285 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T14:46:39.286Z,1443537999.286 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T14:46:39.287Z,1443537999.287 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T14:46:39.288Z,1443537999.288 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T14:46:39.288Z,1443537999.288 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T14:46:39.288Z,1443537999.288 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T14:46:39.289Z,1443537999.289 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T14:46:39.289Z,1443537999.289 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T14:46:39.289Z,1443537999.289 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T14:46:39.290Z,1443537999.290 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T14:46:39.290Z,1443537999.290 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T14:46:39.291Z,1443537999.291 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T14:46:39.292Z,1443537999.292 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T14:46:39.292Z,1443537999.292 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T14:46:39.293Z,1443537999.293 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T14:46:39.293Z,1443537999.293 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T14:46:39.294Z,1443537999.294 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T14:46:39.294Z,1443537999.294 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T14:46:39.295Z,1443537999.295 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T14:46:39.295Z,1443537999.295 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T14:46:39.301Z,1443537999.301 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T14:46:39.320Z,1443537999.320 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T14:46:39.360Z,1443537999.360 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T14:46:39.421Z,1443537999.421 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T14:46:39.432Z,1443537999.432 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T14:46:39.478Z,1443537999.478 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T14:46:39.484Z,1443537999.484 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T14:46:39.509Z,1443537999.509 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T14:46:39.511Z,1443537999.511 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T14:46:39.511Z,1443537999.511 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T14:46:39.512Z,1443537999.512 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T14:46:39.512Z,1443537999.512 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T14:46:39.512Z,1443537999.512 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T14:46:39.512Z,1443537999.512 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T14:46:39.513Z,1443537999.513 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T14:46:39.513Z,1443537999.513 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T14:46:39.533Z,1443537999.533 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T14:46:39.598Z,1443537999.598 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T14:46:39.598Z,1443537999.598 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T14:46:39.669Z,1443537999.669 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T14:46:39.670Z,1443537999.670 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T14:46:39.744Z,1443537999.744 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T14:46:39.747Z,1443537999.747 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T14:46:39.765Z,1443537999.765 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T14:46:39.779Z,1443537999.779 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T14:46:39.785Z,1443537999.785 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T14:46:39.987Z,1443537999.987 [DVL_micro](INFO): Initializing
2015-09-29T14:46:40.167Z,1443538000.167 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:46:40.176Z,1443538000.176 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:46:40.305Z,1443538000.305 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T14:46:40.319Z,1443538000.319 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T14:46:40.331Z,1443538000.331 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T14:46:40.343Z,1443538000.343 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T14:46:40.355Z,1443538000.355 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T14:46:40.585Z,1443538000.585 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:46:40.586Z,1443538000.586 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:46:49.386Z,1443538009.386 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:49.723Z,1443538009.723 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:49.866Z,1443538009.866 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:50.266Z,1443538010.266 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T14:46:50.269Z,1443538010.269 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:50.665Z,1443538010.665 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:51.065Z,1443538011.065 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:51.465Z,1443538011.465 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:51.864Z,1443538011.864 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:52.263Z,1443538012.263 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:52.664Z,1443538012.664 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:53.063Z,1443538013.063 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:53.469Z,1443538013.469 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:53.867Z,1443538013.867 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:54.274Z,1443538014.274 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:54.673Z,1443538014.673 [NAL9602](INFO): No messages in MT queue
2015-09-29T14:46:54.674Z,1443538014.674 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:55.074Z,1443538015.074 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:55.474Z,1443538015.474 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:55.873Z,1443538015.873 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:56.264Z,1443538016.264 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:56.663Z,1443538016.663 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:57.064Z,1443538017.064 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:57.464Z,1443538017.464 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:57.863Z,1443538017.863 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:58.264Z,1443538018.264 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:58.663Z,1443538018.663 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:59.064Z,1443538019.064 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:59.465Z,1443538019.465 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:59.864Z,1443538019.864 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:46:59.919Z,1443538019.919 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T14:47:00.263Z,1443538020.263 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:47:00.664Z,1443538020.664 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:47:01.064Z,1443538021.064 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:47:01.464Z,1443538021.464 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:47:01.864Z,1443538021.864 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:47:02.264Z,1443538022.264 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:47:02.664Z,1443538022.664 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:47:03.064Z,1443538023.064 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:47:03.464Z,1443538023.464 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:47:03.864Z,1443538023.864 [D