2015-09-29T14:38:39.057Z,1443537519.057 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T14:38:39.063Z,1443537519.063 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T14:38:39.064Z,1443537519.064 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T14:38:39.064Z,1443537519.064 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T14:38:39.067Z,1443537519.067 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T14:38:39.067Z,1443537519.067 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T14:38:39.070Z,1443537519.070 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T14:38:39.082Z,1443537519.082 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T14:38:39.087Z,1443537519.087 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T14:38:39.087Z,1443537519.087 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T14:38:39.088Z,1443537519.088 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T14:38:39.091Z,1443537519.091 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T14:38:39.091Z,1443537519.091 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T14:38:39.093Z,1443537519.093 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T14:38:39.094Z,1443537519.094 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T14:38:39.098Z,1443537519.098 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T14:38:39.497Z,1443537519.497 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T14:38:39.499Z,1443537519.499 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T14:38:39.695Z,1443537519.695 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T14:38:39.697Z,1443537519.697 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T14:38:39.844Z,1443537519.844 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T14:38:39.844Z,1443537519.844 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T14:38:39.996Z,1443537519.996 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T14:38:39.996Z,1443537519.996 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T14:38:40.092Z,1443537520.092 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T14:38:40.316Z,1443537520.316 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T14:38:40.316Z,1443537520.316 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T14:38:40.412Z,1443537520.412 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T14:38:40.412Z,1443537520.412 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T14:38:40.732Z,1443537520.732 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T14:38:40.733Z,1443537520.733 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T14:38:41.136Z,1443537521.136 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T14:38:41.137Z,1443537521.137 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T14:38:41.496Z,1443537521.496 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T14:38:41.498Z,1443537521.498 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T14:38:42.101Z,1443537522.101 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T14:38:42.102Z,1443537522.102 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T14:38:42.340Z,1443537522.340 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T14:38:42.341Z,1443537522.341 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T14:38:42.466Z,1443537522.466 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T14:38:42.467Z,1443537522.467 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T14:38:43.018Z,1443537523.018 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T14:38:43.019Z,1443537523.019 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T14:38:43.142Z,1443537523.142 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T14:38:43.144Z,1443537523.144 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T14:38:43.145Z,1443537523.145 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T14:38:43.149Z,1443537523.149 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T14:38:43.223Z,1443537523.223 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T14:38:43.356Z,1443537523.356 [VerticalControl] Loaded
2015-09-29T14:38:43.357Z,1443537523.357 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T14:38:43.357Z,1443537523.357 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T14:38:43.438Z,1443537523.438 [HorizontalControl] Loaded
2015-09-29T14:38:43.438Z,1443537523.438 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T14:38:43.439Z,1443537523.439 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T14:38:43.445Z,1443537523.445 [SpeedControl] Loaded
2015-09-29T14:38:43.445Z,1443537523.445 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T14:38:43.446Z,1443537523.446 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T14:38:43.446Z,1443537523.446 [LoopControl] Loaded
2015-09-29T14:38:43.446Z,1443537523.446 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T14:38:43.451Z,1443537523.451 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T14:38:43.452Z,1443537523.452 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T14:38:43.610Z,1443537523.610 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T14:38:43.626Z,1443537523.626 [SBIT] Loaded
2015-09-29T14:38:43.626Z,1443537523.626 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T14:38:43.627Z,1443537523.627 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T14:38:43.656Z,1443537523.656 [IBIT] Loaded
2015-09-29T14:38:43.657Z,1443537523.657 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T14:38:43.659Z,1443537523.659 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T14:38:43.813Z,1443537523.813 [CBIT] Loaded
2015-09-29T14:38:43.813Z,1443537523.813 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T14:38:43.814Z,1443537523.814 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T14:38:43.815Z,1443537523.815 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T14:38:43.857Z,1443537523.857 [DepthRateCalculator] Loaded
2015-09-29T14:38:43.858Z,1443537523.858 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T14:38:43.863Z,1443537523.863 [PitchRateCalculator] Loaded
2015-09-29T14:38:43.863Z,1443537523.863 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T14:38:43.875Z,1443537523.875 [SpeedCalculator] Loaded
2015-09-29T14:38:43.875Z,1443537523.875 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T14:38:43.897Z,1443537523.897 [TempGradientCalculator] Loaded
2015-09-29T14:38:43.897Z,1443537523.897 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T14:38:43.914Z,1443537523.914 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T14:38:43.914Z,1443537523.914 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T14:38:43.924Z,1443537523.924 [YawRateCalculator] Loaded
2015-09-29T14:38:43.924Z,1443537523.924 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T14:38:43.924Z,1443537523.924 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T14:38:43.925Z,1443537523.925 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T14:38:44.050Z,1443537524.050 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T14:38:44.050Z,1443537524.050 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T14:38:44.050Z,1443537524.050 [StratificationFrontDetector] Loaded
2015-09-29T14:38:44.051Z,1443537524.051 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T14:38:44.051Z,1443537524.051 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T14:38:44.052Z,1443537524.052 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T14:38:44.345Z,1443537524.345 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T14:38:44.345Z,1443537524.345 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T14:38:44.479Z,1443537524.479 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T14:38:44.479Z,1443537524.479 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T14:38:44.544Z,1443537524.544 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T14:38:44.544Z,1443537524.544 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T14:38:44.562Z,1443537524.562 [NavChart] Loaded
2015-09-29T14:38:44.562Z,1443537524.562 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T14:38:44.567Z,1443537524.567 [UniversalFixResidualReporter] Loaded
2015-09-29T14:38:44.567Z,1443537524.567 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T14:38:44.568Z,1443537524.568 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T14:38:44.569Z,1443537524.569 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T14:38:44.577Z,1443537524.577 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T14:38:44.578Z,1443537524.578 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T14:38:44.872Z,1443537524.872 [CTD_NeilBrown] Loaded
2015-09-29T14:38:44.872Z,1443537524.872 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T14:38:44.875Z,1443537524.875 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T14:38:44.875Z,1443537524.875 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T14:38:44.888Z,1443537524.888 [ISUS] Loaded
2015-09-29T14:38:44.889Z,1443537524.889 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T14:38:44.907Z,1443537524.907 [PAR_Licor] Loaded
2015-09-29T14:38:44.908Z,1443537524.908 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T14:38:44.963Z,1443537524.963 [WetLabsBB2FL] Loaded
2015-09-29T14:38:44.963Z,1443537524.963 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T14:38:44.967Z,1443537524.967 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T14:38:44.967Z,1443537524.967 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T14:38:44.968Z,1443537524.968 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T14:38:44.969Z,1443537524.969 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T14:38:45.686Z,1443537525.686 [AHRS_sp3003D] Loaded
2015-09-29T14:38:45.686Z,1443537525.686 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T14:38:45.885Z,1443537525.885 [DataOverHttps] Loaded
2015-09-29T14:38:45.886Z,1443537525.886 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T14:38:45.899Z,1443537525.899 [Depth_Keller] Loaded
2015-09-29T14:38:45.900Z,1443537525.900 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T14:38:45.904Z,1443537525.904 [DropWeight] Loaded
2015-09-29T14:38:45.905Z,1443537525.905 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T14:38:46.061Z,1443537526.061 [DVL_micro] Loaded
2015-09-29T14:38:46.061Z,1443537526.061 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T14:38:46.169Z,1443537526.169 [NAL9602] Loaded
2015-09-29T14:38:46.170Z,1443537526.170 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T14:38:46.216Z,1443537526.216 [Onboard] Loaded
2015-09-29T14:38:46.217Z,1443537526.217 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T14:38:46.228Z,1443537526.228 [Radio_Surface] Loaded
2015-09-29T14:38:46.229Z,1443537526.229 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T14:38:46.231Z,1443537526.231 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T14:38:46.231Z,1443537526.231 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T14:38:46.391Z,1443537526.391 [DAT] Loaded
2015-09-29T14:38:46.391Z,1443537526.391 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T14:38:46.398Z,1443537526.398 [SCPI] Loaded
2015-09-29T14:38:46.398Z,1443537526.398 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T14:38:46.399Z,1443537526.399 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T14:38:46.399Z,1443537526.399 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T14:38:46.529Z,1443537526.529 [BuoyancyServo] Loaded
2015-09-29T14:38:46.529Z,1443537526.529 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T14:38:46.546Z,1443537526.546 [ElevatorServo] Loaded
2015-09-29T14:38:46.546Z,1443537526.546 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T14:38:46.558Z,1443537526.558 [MassServo] Loaded
2015-09-29T14:38:46.558Z,1443537526.558 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T14:38:46.570Z,1443537526.570 [RudderServo] Loaded
2015-09-29T14:38:46.570Z,1443537526.570 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T14:38:46.586Z,1443537526.586 [ThrusterServo] Loaded
2015-09-29T14:38:46.586Z,1443537526.586 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T14:38:46.587Z,1443537526.587 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T14:38:46.587Z,1443537526.587 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T14:38:46.783Z,1443537526.783 [InternalSim] Loaded
2015-09-29T14:38:46.784Z,1443537526.784 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T14:38:46.784Z,1443537526.784 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T14:38:46.785Z,1443537526.785 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T14:38:46.828Z,1443537526.828 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T14:38:46.832Z,1443537526.832 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T14:38:46.833Z,1443537526.833 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T14:38:46.844Z,1443537526.844 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T14:38:46.847Z,1443537526.847 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T14:38:46.847Z,1443537526.847 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T14:38:46.852Z,1443537526.852 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T14:38:46.852Z,1443537526.852 [Supervisor](DEBUG): Running supervisor.
2015-09-29T14:38:46.853Z,1443537526.853 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T14:38:46.859Z,1443537526.859 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T14:38:46.860Z,1443537526.860 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T14:38:46.861Z,1443537526.861 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T14:38:46.863Z,1443537526.863 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T14:38:46.864Z,1443537526.864 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T14:38:46.864Z,1443537526.864 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T14:38:46.864Z,1443537526.864 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T14:38:46.865Z,1443537526.865 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T14:38:46.866Z,1443537526.866 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T14:38:46.867Z,1443537526.867 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T14:38:46.868Z,1443537526.868 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T14:38:46.868Z,1443537526.868 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T14:38:46.869Z,1443537526.869 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T14:38:46.869Z,1443537526.869 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T14:38:46.869Z,1443537526.869 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T14:38:46.870Z,1443537526.870 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T14:38:46.870Z,1443537526.870 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T14:38:46.870Z,1443537526.870 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T14:38:46.871Z,1443537526.871 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T14:38:46.871Z,1443537526.871 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T14:38:46.872Z,1443537526.872 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T14:38:46.872Z,1443537526.872 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T14:38:46.873Z,1443537526.873 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T14:38:46.873Z,1443537526.873 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T14:38:46.874Z,1443537526.874 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T14:38:46.874Z,1443537526.874 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T14:38:46.875Z,1443537526.875 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T14:38:46.875Z,1443537526.875 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T14:38:46.875Z,1443537526.875 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T14:38:46.881Z,1443537526.881 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T14:38:46.915Z,1443537526.915 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T14:38:47.031Z,1443537527.031 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T14:38:47.042Z,1443537527.042 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T14:38:47.064Z,1443537527.064 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T14:38:47.066Z,1443537527.066 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T14:38:47.075Z,1443537527.075 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T14:38:47.137Z,1443537527.137 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T14:38:47.139Z,1443537527.139 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T14:38:47.140Z,1443537527.140 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T14:38:47.140Z,1443537527.140 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T14:38:47.140Z,1443537527.140 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T14:38:47.140Z,1443537527.140 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T14:38:47.141Z,1443537527.141 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T14:38:47.141Z,1443537527.141 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T14:38:47.141Z,1443537527.141 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T14:38:47.281Z,1443537527.281 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T14:38:47.316Z,1443537527.316 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T14:38:47.317Z,1443537527.317 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T14:38:47.371Z,1443537527.371 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T14:38:47.372Z,1443537527.372 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T14:38:47.423Z,1443537527.423 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T14:38:47.426Z,1443537527.426 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T14:38:47.448Z,1443537527.448 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T14:38:47.452Z,1443537527.452 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T14:38:47.458Z,1443537527.458 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T14:38:47.683Z,1443537527.683 [DVL_micro](INFO): Initializing
2015-09-29T14:38:47.851Z,1443537527.851 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:38:47.880Z,1443537527.880 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:38:47.980Z,1443537527.980 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T14:38:47.999Z,1443537527.999 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T14:38:48.006Z,1443537528.006 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T14:38:48.019Z,1443537528.019 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T14:38:48.031Z,1443537528.031 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T14:38:48.257Z,1443537528.257 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:38:48.259Z,1443537528.259 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:38:57.258Z,1443537537.258 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:38:57.595Z,1443537537.595 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:38:57.738Z,1443537537.738 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:38:58.138Z,1443537538.138 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T14:38:58.141Z,1443537538.141 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:38:58.537Z,1443537538.537 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:38:58.937Z,1443537538.937 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:38:59.337Z,1443537539.337 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:38:59.736Z,1443537539.736 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:00.135Z,1443537540.135 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:00.536Z,1443537540.536 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:00.945Z,1443537540.945 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:01.336Z,1443537541.336 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:01.736Z,1443537541.736 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:02.136Z,1443537542.136 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:02.535Z,1443537542.535 [NAL9602](INFO): No messages in MT queue
2015-09-29T14:39:02.536Z,1443537542.536 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:02.936Z,1443537542.936 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:03.336Z,1443537543.336 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:03.736Z,1443537543.736 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:04.135Z,1443537544.135 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:04.535Z,1443537544.535 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:04.936Z,1443537544.936 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:05.336Z,1443537545.336 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:05.737Z,1443537545.737 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:06.136Z,1443537546.136 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:06.535Z,1443537546.535 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:06.935Z,1443537546.935 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:07.335Z,1443537547.335 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:07.349Z,1443537547.349 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T14:39:07.736Z,1443537547.736 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:08.136Z,1443537548.136 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:08.536Z,1443537548.536 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:08.936Z,1443537548.936 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:09.336Z,1443537549.336 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:09.736Z,1443537549.736 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:10.136Z,1443537550.136 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:10.536Z,1443537550.536 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:10.936Z,1443537550.936 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:11.337Z,1443537551.337 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:39:11.736Z,1443537551.736 [D