2015-09-29T14:07:03.499Z,1443535623.499 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T14:07:03.506Z,1443535623.506 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T14:07:03.506Z,1443535623.506 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T14:07:03.507Z,1443535623.507 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T14:07:03.510Z,1443535623.510 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T14:07:03.510Z,1443535623.510 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T14:07:03.513Z,1443535623.513 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T14:07:03.525Z,1443535623.525 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T14:07:03.530Z,1443535623.530 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T14:07:03.530Z,1443535623.530 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T14:07:03.531Z,1443535623.531 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T14:07:03.534Z,1443535623.534 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T14:07:03.534Z,1443535623.534 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T14:07:03.536Z,1443535623.536 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T14:07:03.536Z,1443535623.536 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T14:07:03.540Z,1443535623.540 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T14:07:03.943Z,1443535623.943 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T14:07:03.945Z,1443535623.945 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T14:07:04.138Z,1443535624.138 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T14:07:04.140Z,1443535624.140 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T14:07:04.286Z,1443535624.286 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T14:07:04.287Z,1443535624.287 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T14:07:04.435Z,1443535624.435 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T14:07:04.435Z,1443535624.435 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T14:07:04.529Z,1443535624.529 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T14:07:04.751Z,1443535624.751 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T14:07:04.751Z,1443535624.751 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T14:07:04.846Z,1443535624.846 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T14:07:04.847Z,1443535624.847 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T14:07:05.163Z,1443535625.163 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T14:07:05.163Z,1443535625.163 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T14:07:05.563Z,1443535625.563 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T14:07:05.563Z,1443535625.563 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T14:07:05.918Z,1443535625.918 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T14:07:05.920Z,1443535625.920 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T14:07:06.523Z,1443535626.523 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T14:07:06.524Z,1443535626.524 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T14:07:06.755Z,1443535626.755 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T14:07:06.756Z,1443535626.756 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T14:07:06.870Z,1443535626.870 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T14:07:06.871Z,1443535626.871 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T14:07:07.395Z,1443535627.395 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T14:07:07.396Z,1443535627.396 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T14:07:07.522Z,1443535627.522 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T14:07:07.524Z,1443535627.524 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T14:07:07.524Z,1443535627.524 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T14:07:07.529Z,1443535627.529 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T14:07:07.606Z,1443535627.606 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T14:07:07.741Z,1443535627.741 [VerticalControl] Loaded
2015-09-29T14:07:07.741Z,1443535627.741 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T14:07:07.742Z,1443535627.742 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T14:07:07.824Z,1443535627.824 [HorizontalControl] Loaded
2015-09-29T14:07:07.824Z,1443535627.824 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T14:07:07.825Z,1443535627.825 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T14:07:07.835Z,1443535627.835 [SpeedControl] Loaded
2015-09-29T14:07:07.835Z,1443535627.835 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T14:07:07.836Z,1443535627.836 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T14:07:07.836Z,1443535627.836 [LoopControl] Loaded
2015-09-29T14:07:07.837Z,1443535627.837 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T14:07:07.837Z,1443535627.837 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T14:07:07.838Z,1443535627.838 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T14:07:08.004Z,1443535628.004 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T14:07:08.020Z,1443535628.020 [SBIT] Loaded
2015-09-29T14:07:08.021Z,1443535628.021 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T14:07:08.022Z,1443535628.022 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T14:07:08.055Z,1443535628.055 [IBIT] Loaded
2015-09-29T14:07:08.056Z,1443535628.056 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T14:07:08.058Z,1443535628.058 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T14:07:08.210Z,1443535628.210 [CBIT] Loaded
2015-09-29T14:07:08.211Z,1443535628.211 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T14:07:08.211Z,1443535628.211 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T14:07:08.212Z,1443535628.212 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T14:07:08.253Z,1443535628.253 [DepthRateCalculator] Loaded
2015-09-29T14:07:08.254Z,1443535628.254 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T14:07:08.259Z,1443535628.259 [PitchRateCalculator] Loaded
2015-09-29T14:07:08.260Z,1443535628.260 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T14:07:08.271Z,1443535628.271 [SpeedCalculator] Loaded
2015-09-29T14:07:08.271Z,1443535628.271 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T14:07:08.293Z,1443535628.293 [TempGradientCalculator] Loaded
2015-09-29T14:07:08.293Z,1443535628.293 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T14:07:08.311Z,1443535628.311 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T14:07:08.311Z,1443535628.311 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T14:07:08.316Z,1443535628.316 [YawRateCalculator] Loaded
2015-09-29T14:07:08.317Z,1443535628.317 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T14:07:08.317Z,1443535628.317 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T14:07:08.318Z,1443535628.318 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T14:07:08.444Z,1443535628.444 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T14:07:08.445Z,1443535628.445 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T14:07:08.445Z,1443535628.445 [StratificationFrontDetector] Loaded
2015-09-29T14:07:08.445Z,1443535628.445 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T14:07:08.446Z,1443535628.446 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T14:07:08.446Z,1443535628.446 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T14:07:08.753Z,1443535628.753 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T14:07:08.754Z,1443535628.754 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T14:07:08.888Z,1443535628.888 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T14:07:08.889Z,1443535628.889 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T14:07:08.950Z,1443535628.950 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T14:07:08.950Z,1443535628.950 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T14:07:08.968Z,1443535628.968 [NavChart] Loaded
2015-09-29T14:07:08.968Z,1443535628.968 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T14:07:08.978Z,1443535628.978 [UniversalFixResidualReporter] Loaded
2015-09-29T14:07:08.978Z,1443535628.978 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T14:07:08.978Z,1443535628.978 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T14:07:08.979Z,1443535628.979 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T14:07:08.987Z,1443535628.987 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T14:07:08.988Z,1443535628.988 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T14:07:09.296Z,1443535629.296 [CTD_NeilBrown] Loaded
2015-09-29T14:07:09.296Z,1443535629.296 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T14:07:09.298Z,1443535629.298 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T14:07:09.298Z,1443535629.298 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T14:07:09.311Z,1443535629.311 [ISUS] Loaded
2015-09-29T14:07:09.311Z,1443535629.311 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T14:07:09.326Z,1443535629.326 [PAR_Licor] Loaded
2015-09-29T14:07:09.327Z,1443535629.327 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T14:07:09.387Z,1443535629.387 [WetLabsBB2FL] Loaded
2015-09-29T14:07:09.387Z,1443535629.387 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T14:07:09.390Z,1443535629.390 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T14:07:09.390Z,1443535629.390 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T14:07:09.391Z,1443535629.391 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T14:07:09.391Z,1443535629.391 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T14:07:10.108Z,1443535630.108 [AHRS_sp3003D] Loaded
2015-09-29T14:07:10.108Z,1443535630.108 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T14:07:10.303Z,1443535630.303 [DataOverHttps] Loaded
2015-09-29T14:07:10.303Z,1443535630.303 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T14:07:10.317Z,1443535630.317 [Depth_Keller] Loaded
2015-09-29T14:07:10.317Z,1443535630.317 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T14:07:10.326Z,1443535630.326 [DropWeight] Loaded
2015-09-29T14:07:10.327Z,1443535630.327 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T14:07:10.481Z,1443535630.481 [DVL_micro] Loaded
2015-09-29T14:07:10.482Z,1443535630.482 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T14:07:10.592Z,1443535630.592 [NAL9602] Loaded
2015-09-29T14:07:10.592Z,1443535630.592 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T14:07:10.639Z,1443535630.639 [Onboard] Loaded
2015-09-29T14:07:10.640Z,1443535630.640 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T14:07:10.651Z,1443535630.651 [Radio_Surface] Loaded
2015-09-29T14:07:10.652Z,1443535630.652 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T14:07:10.654Z,1443535630.654 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T14:07:10.654Z,1443535630.654 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T14:07:10.811Z,1443535630.811 [DAT] Loaded
2015-09-29T14:07:10.811Z,1443535630.811 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T14:07:10.818Z,1443535630.818 [SCPI] Loaded
2015-09-29T14:07:10.818Z,1443535630.818 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T14:07:10.819Z,1443535630.819 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T14:07:10.820Z,1443535630.820 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T14:07:10.950Z,1443535630.950 [BuoyancyServo] Loaded
2015-09-29T14:07:10.950Z,1443535630.950 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T14:07:10.963Z,1443535630.963 [ElevatorServo] Loaded
2015-09-29T14:07:10.963Z,1443535630.963 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T14:07:10.975Z,1443535630.975 [MassServo] Loaded
2015-09-29T14:07:10.976Z,1443535630.976 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T14:07:10.988Z,1443535630.988 [RudderServo] Loaded
2015-09-29T14:07:10.988Z,1443535630.988 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T14:07:10.999Z,1443535630.999 [ThrusterServo] Loaded
2015-09-29T14:07:10.000Z,1443535631.000 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T14:07:11.000Z,1443535631.000 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T14:07:11.001Z,1443535631.001 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T14:07:11.188Z,1443535631.188 [InternalSim] Loaded
2015-09-29T14:07:11.188Z,1443535631.188 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T14:07:11.189Z,1443535631.189 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T14:07:11.189Z,1443535631.189 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T14:07:11.229Z,1443535631.229 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T14:07:11.234Z,1443535631.234 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T14:07:11.234Z,1443535631.234 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T14:07:11.241Z,1443535631.241 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T14:07:11.242Z,1443535631.242 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T14:07:11.243Z,1443535631.243 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T14:07:11.247Z,1443535631.247 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T14:07:11.247Z,1443535631.247 [Supervisor](DEBUG): Running supervisor.
2015-09-29T14:07:11.248Z,1443535631.248 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T14:07:11.251Z,1443535631.251 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T14:07:11.251Z,1443535631.251 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T14:07:11.252Z,1443535631.252 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T14:07:11.254Z,1443535631.254 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T14:07:11.255Z,1443535631.255 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T14:07:11.256Z,1443535631.256 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T14:07:11.256Z,1443535631.256 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T14:07:11.256Z,1443535631.256 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T14:07:11.258Z,1443535631.258 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T14:07:11.258Z,1443535631.258 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T14:07:11.259Z,1443535631.259 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T14:07:11.260Z,1443535631.260 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T14:07:11.261Z,1443535631.261 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T14:07:11.261Z,1443535631.261 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T14:07:11.261Z,1443535631.261 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T14:07:11.261Z,1443535631.261 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T14:07:11.262Z,1443535631.262 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T14:07:11.262Z,1443535631.262 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T14:07:11.262Z,1443535631.262 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T14:07:11.263Z,1443535631.263 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T14:07:11.263Z,1443535631.263 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T14:07:11.264Z,1443535631.264 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T14:07:11.265Z,1443535631.265 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T14:07:11.265Z,1443535631.265 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T14:07:11.265Z,1443535631.265 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T14:07:11.266Z,1443535631.266 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T14:07:11.266Z,1443535631.266 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T14:07:11.267Z,1443535631.267 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T14:07:11.267Z,1443535631.267 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T14:07:11.272Z,1443535631.272 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T14:07:11.290Z,1443535631.290 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T14:07:11.322Z,1443535631.322 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T14:07:11.383Z,1443535631.383 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T14:07:11.390Z,1443535631.390 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T14:07:11.430Z,1443535631.430 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T14:07:11.437Z,1443535631.437 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T14:07:11.439Z,1443535631.439 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T14:07:11.440Z,1443535631.440 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T14:07:11.440Z,1443535631.440 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T14:07:11.440Z,1443535631.440 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T14:07:11.440Z,1443535631.440 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T14:07:11.441Z,1443535631.441 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T14:07:11.441Z,1443535631.441 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T14:07:11.441Z,1443535631.441 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T14:07:11.460Z,1443535631.460 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T14:07:11.507Z,1443535631.507 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T14:07:11.536Z,1443535631.536 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T14:07:11.536Z,1443535631.536 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T14:07:11.592Z,1443535631.592 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T14:07:11.602Z,1443535631.602 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T14:07:11.644Z,1443535631.644 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T14:07:11.647Z,1443535631.647 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T14:07:11.677Z,1443535631.677 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T14:07:11.680Z,1443535631.680 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T14:07:11.686Z,1443535631.686 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T14:07:11.877Z,1443535631.877 [DVL_micro](INFO): Initializing
2015-09-29T14:07:12.035Z,1443535632.035 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:07:12.059Z,1443535632.059 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:07:12.178Z,1443535632.178 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T14:07:12.184Z,1443535632.184 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T14:07:12.198Z,1443535632.198 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T14:07:12.211Z,1443535632.211 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T14:07:12.218Z,1443535632.218 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T14:07:12.464Z,1443535632.464 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:07:12.465Z,1443535632.465 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T14:07:21.237Z,1443535641.237 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:21.561Z,1443535641.561 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:21.685Z,1443535641.685 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:22.085Z,1443535642.085 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T14:07:22.088Z,1443535642.088 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:22.483Z,1443535642.483 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:22.883Z,1443535642.883 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:23.283Z,1443535643.283 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:23.683Z,1443535643.683 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:24.084Z,1443535644.084 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:24.483Z,1443535644.483 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:24.882Z,1443535644.882 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:25.282Z,1443535645.282 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:25.684Z,1443535645.684 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:26.084Z,1443535646.084 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:26.482Z,1443535646.482 [NAL9602](INFO): No messages in MT queue
2015-09-29T14:07:26.482Z,1443535646.482 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:26.882Z,1443535646.882 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:27.282Z,1443535647.282 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:27.682Z,1443535647.682 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:28.083Z,1443535648.083 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:28.482Z,1443535648.482 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:28.882Z,1443535648.882 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:29.283Z,1443535649.283 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:29.682Z,1443535649.682 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:30.083Z,1443535650.083 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:30.483Z,1443535650.483 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:30.882Z,1443535650.882 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:31.282Z,1443535651.282 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:31.682Z,1443535651.682 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:31.696Z,1443535651.696 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T14:07:32.082Z,1443535652.082 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:32.483Z,1443535652.483 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:32.883Z,1443535652.883 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:33.282Z,1443535653.282 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:33.682Z,1443535653.682 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:34.083Z,1443535654.083 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:34.482Z,1443535654.482 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:34.883Z,1443535654.883 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:35.283Z,1443535655.283 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T14:07:35.682Z,1443535655.682 [D