2015-09-29T13:51:12.880Z,1443534672.880 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T13:51:12.885Z,1443534672.885 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T13:51:12.886Z,1443534672.886 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T13:51:12.886Z,1443534672.886 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T13:51:12.889Z,1443534672.889 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T13:51:12.889Z,1443534672.889 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T13:51:12.892Z,1443534672.892 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T13:51:12.905Z,1443534672.905 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T13:51:12.909Z,1443534672.909 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T13:51:12.909Z,1443534672.909 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T13:51:12.910Z,1443534672.910 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T13:51:12.913Z,1443534672.913 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T13:51:12.913Z,1443534672.913 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T13:51:12.916Z,1443534672.916 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T13:51:12.916Z,1443534672.916 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T13:51:12.920Z,1443534672.920 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T13:51:13.316Z,1443534673.316 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T13:51:13.318Z,1443534673.318 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T13:51:13.508Z,1443534673.508 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T13:51:13.510Z,1443534673.510 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T13:51:13.654Z,1443534673.654 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T13:51:13.655Z,1443534673.655 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T13:51:13.802Z,1443534673.802 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T13:51:13.803Z,1443534673.803 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T13:51:13.897Z,1443534673.897 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T13:51:14.118Z,1443534674.118 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T13:51:14.119Z,1443534674.119 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T13:51:14.214Z,1443534674.214 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T13:51:14.214Z,1443534674.214 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T13:51:14.534Z,1443534674.534 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T13:51:14.535Z,1443534674.535 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T13:51:14.932Z,1443534674.932 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T13:51:14.933Z,1443534674.933 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T13:51:15.286Z,1443534675.286 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T13:51:15.288Z,1443534675.288 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T13:51:15.879Z,1443534675.879 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T13:51:15.880Z,1443534675.880 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T13:51:16.110Z,1443534676.110 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T13:51:16.111Z,1443534676.111 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T13:51:16.230Z,1443534676.230 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T13:51:16.230Z,1443534676.230 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T13:51:16.763Z,1443534676.763 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T13:51:16.763Z,1443534676.763 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T13:51:16.889Z,1443534676.889 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T13:51:16.891Z,1443534676.891 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T13:51:16.891Z,1443534676.891 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T13:51:16.896Z,1443534676.896 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T13:51:16.972Z,1443534676.972 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T13:51:17.108Z,1443534677.108 [VerticalControl] Loaded
2015-09-29T13:51:17.108Z,1443534677.108 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T13:51:17.113Z,1443534677.113 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T13:51:17.190Z,1443534677.190 [HorizontalControl] Loaded
2015-09-29T13:51:17.191Z,1443534677.191 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T13:51:17.191Z,1443534677.191 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T13:51:17.201Z,1443534677.201 [SpeedControl] Loaded
2015-09-29T13:51:17.202Z,1443534677.202 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T13:51:17.202Z,1443534677.202 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T13:51:17.203Z,1443534677.203 [LoopControl] Loaded
2015-09-29T13:51:17.203Z,1443534677.203 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T13:51:17.204Z,1443534677.204 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T13:51:17.204Z,1443534677.204 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T13:51:17.363Z,1443534677.363 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T13:51:17.375Z,1443534677.375 [SBIT] Loaded
2015-09-29T13:51:17.375Z,1443534677.375 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T13:51:17.376Z,1443534677.376 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T13:51:17.410Z,1443534677.410 [IBIT] Loaded
2015-09-29T13:51:17.410Z,1443534677.410 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T13:51:17.413Z,1443534677.413 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T13:51:17.568Z,1443534677.568 [CBIT] Loaded
2015-09-29T13:51:17.569Z,1443534677.569 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T13:51:17.569Z,1443534677.569 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T13:51:17.570Z,1443534677.570 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T13:51:17.611Z,1443534677.611 [DepthRateCalculator] Loaded
2015-09-29T13:51:17.612Z,1443534677.612 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T13:51:17.617Z,1443534677.617 [PitchRateCalculator] Loaded
2015-09-29T13:51:17.617Z,1443534677.617 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T13:51:17.633Z,1443534677.633 [SpeedCalculator] Loaded
2015-09-29T13:51:17.633Z,1443534677.633 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T13:51:17.651Z,1443534677.651 [TempGradientCalculator] Loaded
2015-09-29T13:51:17.651Z,1443534677.651 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T13:51:17.669Z,1443534677.669 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T13:51:17.669Z,1443534677.669 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T13:51:17.679Z,1443534677.679 [YawRateCalculator] Loaded
2015-09-29T13:51:17.679Z,1443534677.679 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T13:51:17.679Z,1443534677.679 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T13:51:17.680Z,1443534677.680 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T13:51:17.802Z,1443534677.802 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T13:51:17.803Z,1443534677.803 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T13:51:17.803Z,1443534677.803 [StratificationFrontDetector] Loaded
2015-09-29T13:51:17.803Z,1443534677.803 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T13:51:17.804Z,1443534677.804 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T13:51:17.804Z,1443534677.804 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T13:51:18.072Z,1443534678.072 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T13:51:18.072Z,1443534678.072 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T13:51:18.193Z,1443534678.193 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T13:51:18.193Z,1443534678.193 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T13:51:18.249Z,1443534678.249 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T13:51:18.250Z,1443534678.250 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T13:51:18.267Z,1443534678.267 [NavChart] Loaded
2015-09-29T13:51:18.268Z,1443534678.268 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T13:51:18.273Z,1443534678.273 [UniversalFixResidualReporter] Loaded
2015-09-29T13:51:18.273Z,1443534678.273 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T13:51:18.274Z,1443534678.274 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T13:51:18.274Z,1443534678.274 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T13:51:18.283Z,1443534678.283 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T13:51:18.284Z,1443534678.284 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T13:51:18.566Z,1443534678.566 [CTD_NeilBrown] Loaded
2015-09-29T13:51:18.567Z,1443534678.567 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T13:51:18.568Z,1443534678.568 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T13:51:18.568Z,1443534678.568 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T13:51:18.581Z,1443534678.581 [ISUS] Loaded
2015-09-29T13:51:18.582Z,1443534678.582 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T13:51:18.596Z,1443534678.596 [PAR_Licor] Loaded
2015-09-29T13:51:18.596Z,1443534678.596 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T13:51:18.649Z,1443534678.649 [WetLabsBB2FL] Loaded
2015-09-29T13:51:18.649Z,1443534678.649 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T13:51:18.650Z,1443534678.650 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T13:51:18.650Z,1443534678.650 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T13:51:18.651Z,1443534678.651 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T13:51:18.652Z,1443534678.652 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T13:51:19.298Z,1443534679.298 [AHRS_sp3003D] Loaded
2015-09-29T13:51:19.298Z,1443534679.298 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T13:51:19.467Z,1443534679.467 [DataOverHttps] Loaded
2015-09-29T13:51:19.467Z,1443534679.467 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T13:51:19.481Z,1443534679.481 [Depth_Keller] Loaded
2015-09-29T13:51:19.481Z,1443534679.481 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T13:51:19.486Z,1443534679.486 [DropWeight] Loaded
2015-09-29T13:51:19.486Z,1443534679.486 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T13:51:19.627Z,1443534679.627 [DVL_micro] Loaded
2015-09-29T13:51:19.628Z,1443534679.628 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T13:51:19.724Z,1443534679.724 [NAL9602] Loaded
2015-09-29T13:51:19.724Z,1443534679.724 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T13:51:19.767Z,1443534679.767 [Onboard] Loaded
2015-09-29T13:51:19.768Z,1443534679.768 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T13:51:19.779Z,1443534679.779 [Radio_Surface] Loaded
2015-09-29T13:51:19.780Z,1443534679.780 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T13:51:19.781Z,1443534679.781 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T13:51:19.781Z,1443534679.781 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T13:51:19.924Z,1443534679.924 [DAT] Loaded
2015-09-29T13:51:19.925Z,1443534679.925 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T13:51:19.931Z,1443534679.931 [SCPI] Loaded
2015-09-29T13:51:19.932Z,1443534679.932 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T13:51:19.932Z,1443534679.932 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T13:51:19.933Z,1443534679.933 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T13:51:20.055Z,1443534680.055 [BuoyancyServo] Loaded
2015-09-29T13:51:20.055Z,1443534680.055 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T13:51:20.068Z,1443534680.068 [ElevatorServo] Loaded
2015-09-29T13:51:20.068Z,1443534680.068 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T13:51:20.080Z,1443534680.080 [MassServo] Loaded
2015-09-29T13:51:20.080Z,1443534680.080 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T13:51:20.092Z,1443534680.092 [RudderServo] Loaded
2015-09-29T13:51:20.093Z,1443534680.093 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T13:51:20.104Z,1443534680.104 [ThrusterServo] Loaded
2015-09-29T13:51:20.104Z,1443534680.104 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T13:51:20.105Z,1443534680.105 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T13:51:20.106Z,1443534680.106 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T13:51:20.288Z,1443534680.288 [InternalSim] Loaded
2015-09-29T13:51:20.288Z,1443534680.288 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T13:51:20.289Z,1443534680.289 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T13:51:20.289Z,1443534680.289 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T13:51:20.328Z,1443534680.328 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T13:51:20.332Z,1443534680.332 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T13:51:20.333Z,1443534680.333 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T13:51:20.340Z,1443534680.340 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T13:51:20.341Z,1443534680.341 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T13:51:20.342Z,1443534680.342 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T13:51:20.346Z,1443534680.346 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T13:51:20.347Z,1443534680.347 [Supervisor](DEBUG): Running supervisor.
2015-09-29T13:51:20.347Z,1443534680.347 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T13:51:20.350Z,1443534680.350 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T13:51:20.350Z,1443534680.350 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T13:51:20.351Z,1443534680.351 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T13:51:20.353Z,1443534680.353 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T13:51:20.354Z,1443534680.354 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T13:51:20.355Z,1443534680.355 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T13:51:20.355Z,1443534680.355 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T13:51:20.356Z,1443534680.356 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T13:51:20.357Z,1443534680.357 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T13:51:20.357Z,1443534680.357 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T13:51:20.358Z,1443534680.358 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T13:51:20.359Z,1443534680.359 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T13:51:20.360Z,1443534680.360 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T13:51:20.360Z,1443534680.360 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T13:51:20.360Z,1443534680.360 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T13:51:20.360Z,1443534680.360 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T13:51:20.361Z,1443534680.361 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T13:51:20.361Z,1443534680.361 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T13:51:20.361Z,1443534680.361 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T13:51:20.362Z,1443534680.362 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T13:51:20.363Z,1443534680.363 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T13:51:20.363Z,1443534680.363 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T13:51:20.364Z,1443534680.364 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:51:20.364Z,1443534680.364 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:51:20.365Z,1443534680.365 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T13:51:20.365Z,1443534680.365 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:51:20.366Z,1443534680.366 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:51:20.366Z,1443534680.366 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T13:51:20.367Z,1443534680.367 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T13:51:20.371Z,1443534680.371 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T13:51:20.390Z,1443534680.390 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T13:51:20.430Z,1443534680.430 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T13:51:20.485Z,1443534680.485 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T13:51:20.494Z,1443534680.494 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T13:51:20.502Z,1443534680.502 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T13:51:20.553Z,1443534680.553 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T13:51:20.555Z,1443534680.555 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T13:51:20.555Z,1443534680.555 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T13:51:20.555Z,1443534680.555 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T13:51:20.556Z,1443534680.556 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T13:51:20.556Z,1443534680.556 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T13:51:20.556Z,1443534680.556 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T13:51:20.556Z,1443534680.556 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T13:51:20.557Z,1443534680.557 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T13:51:20.584Z,1443534680.584 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T13:51:20.630Z,1443534680.630 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:51:20.671Z,1443534680.671 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T13:51:20.672Z,1443534680.672 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T13:51:20.745Z,1443534680.745 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T13:51:20.746Z,1443534680.746 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:51:20.761Z,1443534680.761 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T13:51:20.791Z,1443534680.791 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T13:51:20.813Z,1443534680.813 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T13:51:20.817Z,1443534680.817 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T13:51:20.835Z,1443534680.835 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T13:51:21.046Z,1443534681.046 [DVL_micro](INFO): Initializing
2015-09-29T13:51:21.198Z,1443534681.198 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:51:21.222Z,1443534681.222 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:51:21.342Z,1443534681.342 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T13:51:21.349Z,1443534681.349 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T13:51:21.365Z,1443534681.365 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T13:51:21.378Z,1443534681.378 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T13:51:21.389Z,1443534681.389 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T13:51:21.631Z,1443534681.631 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:51:21.632Z,1443534681.632 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:51:30.485Z,1443534690.485 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:30.793Z,1443534690.793 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:30.944Z,1443534690.944 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:31.344Z,1443534691.344 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T13:51:31.347Z,1443534691.347 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:31.743Z,1443534691.743 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:32.143Z,1443534692.143 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:32.543Z,1443534692.543 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:32.943Z,1443534692.943 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:33.342Z,1443534693.342 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:33.742Z,1443534693.742 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:34.155Z,1443534694.155 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:34.543Z,1443534694.543 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:34.943Z,1443534694.943 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:35.343Z,1443534695.343 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:35.741Z,1443534695.741 [NAL9602](INFO): No messages in MT queue
2015-09-29T13:51:35.742Z,1443534695.742 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:36.142Z,1443534696.142 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:36.543Z,1443534696.543 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:36.942Z,1443534696.942 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:37.341Z,1443534697.341 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:37.741Z,1443534697.741 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:38.142Z,1443534698.142 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:38.541Z,1443534698.541 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:38.941Z,1443534698.941 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:39.341Z,1443534699.341 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:39.742Z,1443534699.742 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:40.141Z,1443534700.141 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:40.542Z,1443534700.542 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:40.941Z,1443534700.941 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:40.980Z,1443534700.980 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T13:51:41.342Z,1443534701.342 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:41.742Z,1443534701.742 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:42.142Z,1443534702.142 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:42.542Z,1443534702.542 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:42.943Z,1443534702.943 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:43.342Z,1443534703.342 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:43.742Z,1443534703.742 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:44.142Z,1443534704.142 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:44.542Z,1443534704.542 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:51:44.942Z,1443534704.942 [D