2015-09-29T13:43:21.276Z,1443534201.276 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T13:43:21.279Z,1443534201.279 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T13:43:21.280Z,1443534201.280 [SyncHandler](INFO): Protected caller Thread ID is 759
2015-09-29T13:43:21.280Z,1443534201.280 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T13:43:21.282Z,1443534201.282 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T13:43:21.282Z,1443534201.282 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 760
2015-09-29T13:43:21.285Z,1443534201.285 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T13:43:21.297Z,1443534201.297 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T13:43:21.302Z,1443534201.302 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T13:43:21.302Z,1443534201.302 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 761
2015-09-29T13:43:21.303Z,1443534201.303 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T13:43:21.306Z,1443534201.306 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T13:43:21.306Z,1443534201.306 [logger ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T13:43:21.308Z,1443534201.308 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T13:43:21.309Z,1443534201.309 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T13:43:21.313Z,1443534201.313 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T13:43:21.700Z,1443534201.700 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T13:43:21.701Z,1443534201.701 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T13:43:21.897Z,1443534201.897 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T13:43:21.899Z,1443534201.899 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T13:43:22.043Z,1443534202.043 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T13:43:22.043Z,1443534202.043 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T13:43:22.191Z,1443534202.191 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T13:43:22.191Z,1443534202.191 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T13:43:22.286Z,1443534202.286 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T13:43:22.507Z,1443534202.507 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T13:43:22.508Z,1443534202.508 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T13:43:22.602Z,1443534202.602 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T13:43:22.603Z,1443534202.603 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T13:43:22.915Z,1443534202.915 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T13:43:22.916Z,1443534202.916 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T13:43:23.311Z,1443534203.311 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T13:43:23.312Z,1443534203.312 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T13:43:23.663Z,1443534203.663 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T13:43:23.665Z,1443534203.665 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T13:43:24.259Z,1443534204.259 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T13:43:24.260Z,1443534204.260 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T13:43:24.491Z,1443534204.491 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T13:43:24.492Z,1443534204.492 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T13:43:24.611Z,1443534204.611 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T13:43:24.612Z,1443534204.612 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T13:43:25.126Z,1443534205.126 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T13:43:25.127Z,1443534205.127 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T13:43:25.285Z,1443534205.285 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T13:43:25.287Z,1443534205.287 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T13:43:25.288Z,1443534205.288 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T13:43:25.292Z,1443534205.292 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T13:43:25.366Z,1443534205.366 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T13:43:25.499Z,1443534205.499 [VerticalControl] Loaded
2015-09-29T13:43:25.499Z,1443534205.499 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T13:43:25.500Z,1443534205.500 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T13:43:25.580Z,1443534205.580 [HorizontalControl] Loaded
2015-09-29T13:43:25.581Z,1443534205.581 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T13:43:25.581Z,1443534205.581 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T13:43:25.587Z,1443534205.587 [SpeedControl] Loaded
2015-09-29T13:43:25.587Z,1443534205.587 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T13:43:25.588Z,1443534205.588 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T13:43:25.589Z,1443534205.589 [LoopControl] Loaded
2015-09-29T13:43:25.589Z,1443534205.589 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T13:43:25.589Z,1443534205.589 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T13:43:25.590Z,1443534205.590 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T13:43:25.750Z,1443534205.750 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T13:43:25.763Z,1443534205.763 [SBIT] Loaded
2015-09-29T13:43:25.763Z,1443534205.763 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T13:43:25.764Z,1443534205.764 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T13:43:25.797Z,1443534205.797 [IBIT] Loaded
2015-09-29T13:43:25.797Z,1443534205.797 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T13:43:25.799Z,1443534205.799 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T13:43:25.953Z,1443534205.953 [CBIT] Loaded
2015-09-29T13:43:25.953Z,1443534205.953 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T13:43:25.954Z,1443534205.954 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T13:43:25.955Z,1443534205.955 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T13:43:25.992Z,1443534205.992 [DepthRateCalculator] Loaded
2015-09-29T13:43:25.992Z,1443534205.992 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T13:43:26.001Z,1443534206.001 [PitchRateCalculator] Loaded
2015-09-29T13:43:26.002Z,1443534206.002 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T13:43:26.013Z,1443534206.013 [SpeedCalculator] Loaded
2015-09-29T13:43:26.013Z,1443534206.013 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T13:43:26.035Z,1443534206.035 [TempGradientCalculator] Loaded
2015-09-29T13:43:26.035Z,1443534206.035 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T13:43:26.052Z,1443534206.052 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T13:43:26.052Z,1443534206.052 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T13:43:26.057Z,1443534206.057 [YawRateCalculator] Loaded
2015-09-29T13:43:26.058Z,1443534206.058 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T13:43:26.058Z,1443534206.058 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T13:43:26.059Z,1443534206.059 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T13:43:26.185Z,1443534206.185 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T13:43:26.185Z,1443534206.185 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T13:43:26.185Z,1443534206.185 [StratificationFrontDetector] Loaded
2015-09-29T13:43:26.186Z,1443534206.186 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T13:43:26.186Z,1443534206.186 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T13:43:26.187Z,1443534206.187 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T13:43:26.478Z,1443534206.478 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T13:43:26.478Z,1443534206.478 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T13:43:26.610Z,1443534206.610 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T13:43:26.611Z,1443534206.611 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T13:43:26.671Z,1443534206.671 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T13:43:26.672Z,1443534206.672 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T13:43:26.689Z,1443534206.689 [NavChart] Loaded
2015-09-29T13:43:26.690Z,1443534206.690 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T13:43:26.695Z,1443534206.695 [UniversalFixResidualReporter] Loaded
2015-09-29T13:43:26.695Z,1443534206.695 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T13:43:26.696Z,1443534206.696 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T13:43:26.696Z,1443534206.696 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T13:43:26.705Z,1443534206.705 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T13:43:26.705Z,1443534206.705 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T13:43:27.006Z,1443534207.006 [CTD_NeilBrown] Loaded
2015-09-29T13:43:27.007Z,1443534207.007 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T13:43:27.010Z,1443534207.010 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T13:43:27.010Z,1443534207.010 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 808
2015-09-29T13:43:27.023Z,1443534207.023 [ISUS] Loaded
2015-09-29T13:43:27.023Z,1443534207.023 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T13:43:27.038Z,1443534207.038 [PAR_Licor] Loaded
2015-09-29T13:43:27.038Z,1443534207.038 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T13:43:27.094Z,1443534207.094 [WetLabsBB2FL] Loaded
2015-09-29T13:43:27.098Z,1443534207.098 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T13:43:27.102Z,1443534207.102 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T13:43:27.102Z,1443534207.102 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 809
2015-09-29T13:43:27.103Z,1443534207.103 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T13:43:27.104Z,1443534207.104 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T13:43:27.838Z,1443534207.838 [AHRS_sp3003D] Loaded
2015-09-29T13:43:27.838Z,1443534207.838 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T13:43:28.030Z,1443534208.030 [DataOverHttps] Loaded
2015-09-29T13:43:28.030Z,1443534208.030 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T13:43:28.044Z,1443534208.044 [Depth_Keller] Loaded
2015-09-29T13:43:28.044Z,1443534208.044 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T13:43:28.049Z,1443534208.049 [DropWeight] Loaded
2015-09-29T13:43:28.049Z,1443534208.049 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T13:43:28.205Z,1443534208.205 [DVL_micro] Loaded
2015-09-29T13:43:28.205Z,1443534208.205 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T13:43:28.308Z,1443534208.308 [NAL9602] Loaded
2015-09-29T13:43:28.309Z,1443534208.309 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T13:43:28.359Z,1443534208.359 [Onboard] Loaded
2015-09-29T13:43:28.360Z,1443534208.360 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T13:43:28.371Z,1443534208.371 [Radio_Surface] Loaded
2015-09-29T13:43:28.371Z,1443534208.371 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T13:43:28.374Z,1443534208.374 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T13:43:28.374Z,1443534208.374 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T13:43:28.533Z,1443534208.533 [DAT] Loaded
2015-09-29T13:43:28.533Z,1443534208.533 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T13:43:28.540Z,1443534208.540 [SCPI] Loaded
2015-09-29T13:43:28.540Z,1443534208.540 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T13:43:28.541Z,1443534208.541 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T13:43:28.541Z,1443534208.541 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T13:43:28.671Z,1443534208.671 [BuoyancyServo] Loaded
2015-09-29T13:43:28.671Z,1443534208.671 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T13:43:28.688Z,1443534208.688 [ElevatorServo] Loaded
2015-09-29T13:43:28.689Z,1443534208.689 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T13:43:28.700Z,1443534208.700 [MassServo] Loaded
2015-09-29T13:43:28.700Z,1443534208.700 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T13:43:28.712Z,1443534208.712 [RudderServo] Loaded
2015-09-29T13:43:28.713Z,1443534208.713 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T13:43:28.724Z,1443534208.724 [ThrusterServo] Loaded
2015-09-29T13:43:28.724Z,1443534208.724 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T13:43:28.724Z,1443534208.724 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T13:43:28.725Z,1443534208.725 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T13:43:28.925Z,1443534208.925 [InternalSim] Loaded
2015-09-29T13:43:28.925Z,1443534208.925 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T13:43:28.926Z,1443534208.926 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T13:43:28.926Z,1443534208.926 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T13:43:28.970Z,1443534208.970 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T13:43:28.974Z,1443534208.974 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T13:43:28.975Z,1443534208.975 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T13:43:28.982Z,1443534208.982 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T13:43:28.986Z,1443534208.986 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T13:43:28.986Z,1443534208.986 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T13:43:28.991Z,1443534208.991 [Supervisor](INFO): Main Thread ID is 758
2015-09-29T13:43:28.991Z,1443534208.991 [Supervisor](DEBUG): Running supervisor.
2015-09-29T13:43:28.992Z,1443534208.992 [CommandLine ThreadHandler](INFO): Handler Thread ID is 812
2015-09-29T13:43:28.998Z,1443534208.998 [controlThread ThreadHandler](INFO): Handler Thread ID is 813
2015-09-29T13:43:28.999Z,1443534208.999 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T13:43:28.000Z,1443534209.000 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T13:43:29.002Z,1443534209.002 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T13:43:29.003Z,1443534209.003 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T13:43:29.003Z,1443534209.003 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T13:43:29.003Z,1443534209.003 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T13:43:29.004Z,1443534209.004 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T13:43:29.005Z,1443534209.005 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T13:43:29.006Z,1443534209.006 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T13:43:29.007Z,1443534209.007 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T13:43:29.007Z,1443534209.007 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T13:43:29.008Z,1443534209.008 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T13:43:29.008Z,1443534209.008 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T13:43:29.008Z,1443534209.008 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T13:43:29.009Z,1443534209.009 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T13:43:29.009Z,1443534209.009 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T13:43:29.009Z,1443534209.009 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T13:43:29.010Z,1443534209.010 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T13:43:29.010Z,1443534209.010 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T13:43:29.011Z,1443534209.011 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T13:43:29.011Z,1443534209.011 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T13:43:29.012Z,1443534209.012 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:43:29.012Z,1443534209.012 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:43:29.013Z,1443534209.013 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T13:43:29.013Z,1443534209.013 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:43:29.014Z,1443534209.014 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:43:29.014Z,1443534209.014 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T13:43:29.014Z,1443534209.014 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T13:43:29.020Z,1443534209.020 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T13:43:29.042Z,1443534209.042 [logger ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T13:43:29.082Z,1443534209.082 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T13:43:29.158Z,1443534209.158 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T13:43:29.166Z,1443534209.166 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T13:43:29.230Z,1443534209.230 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T13:43:29.239Z,1443534209.239 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T13:43:29.241Z,1443534209.241 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T13:43:29.241Z,1443534209.241 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T13:43:29.241Z,1443534209.241 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T13:43:29.242Z,1443534209.242 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T13:43:29.242Z,1443534209.242 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T13:43:29.242Z,1443534209.242 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T13:43:29.243Z,1443534209.243 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T13:43:29.243Z,1443534209.243 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T13:43:29.303Z,1443534209.303 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T13:43:29.335Z,1443534209.335 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:43:29.357Z,1443534209.357 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T13:43:29.358Z,1443534209.358 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T13:43:29.409Z,1443534209.409 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T13:43:29.431Z,1443534209.431 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:43:29.457Z,1443534209.457 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T13:43:29.459Z,1443534209.459 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T13:43:29.485Z,1443534209.485 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T13:43:29.489Z,1443534209.489 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T13:43:29.500Z,1443534209.500 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T13:43:29.722Z,1443534209.722 [DVL_micro](INFO): Initializing
2015-09-29T13:43:29.882Z,1443534209.882 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:43:29.903Z,1443534209.903 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:43:30.022Z,1443534210.022 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T13:43:30.030Z,1443534210.030 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T13:43:30.054Z,1443534210.054 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T13:43:30.067Z,1443534210.067 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T13:43:30.078Z,1443534210.078 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T13:43:30.336Z,1443534210.336 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:43:30.337Z,1443534210.337 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:43:39.412Z,1443534219.412 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:39.748Z,1443534219.748 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:39.886Z,1443534219.886 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:40.285Z,1443534220.285 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T13:43:40.289Z,1443534220.289 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:40.683Z,1443534220.683 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:41.083Z,1443534221.083 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:41.483Z,1443534221.483 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:41.883Z,1443534221.883 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:42.283Z,1443534222.283 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:42.684Z,1443534222.684 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:43.083Z,1443534223.083 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:43.483Z,1443534223.483 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:43.883Z,1443534223.883 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:44.283Z,1443534224.283 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:44.682Z,1443534224.682 [NAL9602](INFO): No messages in MT queue
2015-09-29T13:43:44.683Z,1443534224.683 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:45.083Z,1443534225.083 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:45.501Z,1443534225.501 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:45.883Z,1443534225.883 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:46.282Z,1443534226.282 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:46.682Z,1443534226.682 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:47.083Z,1443534227.083 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:47.482Z,1443534227.482 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:47.882Z,1443534227.882 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:48.283Z,1443534228.283 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:48.683Z,1443534228.683 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:49.083Z,1443534229.083 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:49.482Z,1443534229.482 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:49.497Z,1443534229.497 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T13:43:49.882Z,1443534229.882 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:50.284Z,1443534230.284 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:50.683Z,1443534230.683 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:51.083Z,1443534231.083 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:51.483Z,1443534231.483 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:51.883Z,1443534231.883 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:52.283Z,1443534232.283 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:52.683Z,1443534232.683 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:53.083Z,1443534233.083 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:53.483Z,1443534233.483 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:43:53.883Z,1443534233.883 [D