2015-09-29T13:35:23.733Z,1443533723.733 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T13:35:23.736Z,1443533723.736 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T13:35:23.737Z,1443533723.737 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T13:35:23.737Z,1443533723.737 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T13:35:23.740Z,1443533723.740 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T13:35:23.741Z,1443533723.741 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T13:35:23.743Z,1443533723.743 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T13:35:23.757Z,1443533723.757 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T13:35:23.760Z,1443533723.760 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T13:35:23.761Z,1443533723.761 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T13:35:23.761Z,1443533723.761 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T13:35:23.764Z,1443533723.764 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T13:35:23.765Z,1443533723.765 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T13:35:23.767Z,1443533723.767 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T13:35:23.767Z,1443533723.767 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T13:35:23.771Z,1443533723.771 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T13:35:24.194Z,1443533724.194 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T13:35:24.195Z,1443533724.195 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T13:35:24.401Z,1443533724.401 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T13:35:24.403Z,1443533724.403 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T13:35:24.553Z,1443533724.553 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T13:35:24.554Z,1443533724.554 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T13:35:24.709Z,1443533724.709 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T13:35:24.710Z,1443533724.710 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T13:35:24.809Z,1443533724.809 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T13:35:25.041Z,1443533725.041 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T13:35:25.042Z,1443533725.042 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T13:35:25.141Z,1443533725.141 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T13:35:25.141Z,1443533725.141 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T13:35:25.472Z,1443533725.472 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T13:35:25.472Z,1443533725.472 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T13:35:25.897Z,1443533725.897 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T13:35:25.898Z,1443533725.898 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T13:35:26.274Z,1443533726.274 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T13:35:26.276Z,1443533726.276 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T13:35:26.910Z,1443533726.910 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T13:35:26.911Z,1443533726.911 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T13:35:27.161Z,1443533727.161 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T13:35:27.162Z,1443533727.162 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T13:35:27.307Z,1443533727.307 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T13:35:27.308Z,1443533727.308 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T13:35:27.849Z,1443533727.849 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T13:35:27.850Z,1443533727.850 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T13:35:27.976Z,1443533727.976 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T13:35:27.978Z,1443533727.978 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T13:35:27.978Z,1443533727.978 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T13:35:27.982Z,1443533727.982 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T13:35:28.058Z,1443533728.058 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T13:35:28.197Z,1443533728.197 [VerticalControl] Loaded
2015-09-29T13:35:28.198Z,1443533728.198 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T13:35:28.198Z,1443533728.198 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T13:35:28.282Z,1443533728.282 [HorizontalControl] Loaded
2015-09-29T13:35:28.283Z,1443533728.283 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T13:35:28.283Z,1443533728.283 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T13:35:28.294Z,1443533728.294 [SpeedControl] Loaded
2015-09-29T13:35:28.294Z,1443533728.294 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T13:35:28.295Z,1443533728.295 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T13:35:28.295Z,1443533728.295 [LoopControl] Loaded
2015-09-29T13:35:28.296Z,1443533728.296 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T13:35:28.296Z,1443533728.296 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T13:35:28.297Z,1443533728.297 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T13:35:28.459Z,1443533728.459 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T13:35:28.472Z,1443533728.472 [SBIT] Loaded
2015-09-29T13:35:28.472Z,1443533728.472 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T13:35:28.473Z,1443533728.473 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T13:35:28.508Z,1443533728.508 [IBIT] Loaded
2015-09-29T13:35:28.508Z,1443533728.508 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T13:35:28.510Z,1443533728.510 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T13:35:28.674Z,1443533728.674 [CBIT] Loaded
2015-09-29T13:35:28.675Z,1443533728.675 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T13:35:28.675Z,1443533728.675 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T13:35:28.676Z,1443533728.676 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T13:35:28.714Z,1443533728.714 [DepthRateCalculator] Loaded
2015-09-29T13:35:28.714Z,1443533728.714 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T13:35:28.724Z,1443533728.724 [PitchRateCalculator] Loaded
2015-09-29T13:35:28.724Z,1443533728.724 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T13:35:28.740Z,1443533728.740 [SpeedCalculator] Loaded
2015-09-29T13:35:28.741Z,1443533728.741 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T13:35:28.759Z,1443533728.759 [TempGradientCalculator] Loaded
2015-09-29T13:35:28.759Z,1443533728.759 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T13:35:28.781Z,1443533728.781 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T13:35:28.781Z,1443533728.781 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T13:35:28.787Z,1443533728.787 [YawRateCalculator] Loaded
2015-09-29T13:35:28.787Z,1443533728.787 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T13:35:28.788Z,1443533728.788 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T13:35:28.788Z,1443533728.788 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T13:35:28.911Z,1443533728.911 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T13:35:28.911Z,1443533728.911 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T13:35:28.911Z,1443533728.911 [StratificationFrontDetector] Loaded
2015-09-29T13:35:28.912Z,1443533728.912 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T13:35:28.912Z,1443533728.912 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T13:35:28.913Z,1443533728.913 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T13:35:29.212Z,1443533729.212 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T13:35:29.213Z,1443533729.213 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T13:35:29.352Z,1443533729.352 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T13:35:29.353Z,1443533729.353 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T13:35:29.419Z,1443533729.419 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T13:35:29.420Z,1443533729.420 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T13:35:29.438Z,1443533729.438 [NavChart] Loaded
2015-09-29T13:35:29.439Z,1443533729.439 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T13:35:29.444Z,1443533729.444 [UniversalFixResidualReporter] Loaded
2015-09-29T13:35:29.444Z,1443533729.444 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T13:35:29.445Z,1443533729.445 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T13:35:29.445Z,1443533729.445 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T13:35:29.454Z,1443533729.454 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T13:35:29.455Z,1443533729.455 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T13:35:29.756Z,1443533729.756 [CTD_NeilBrown] Loaded
2015-09-29T13:35:29.756Z,1443533729.756 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T13:35:29.757Z,1443533729.757 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T13:35:29.757Z,1443533729.757 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T13:35:29.771Z,1443533729.771 [ISUS] Loaded
2015-09-29T13:35:29.771Z,1443533729.771 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T13:35:29.786Z,1443533729.786 [PAR_Licor] Loaded
2015-09-29T13:35:29.786Z,1443533729.786 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T13:35:29.840Z,1443533729.840 [WetLabsBB2FL] Loaded
2015-09-29T13:35:29.840Z,1443533729.840 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T13:35:29.841Z,1443533729.841 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T13:35:29.841Z,1443533729.841 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T13:35:29.842Z,1443533729.842 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T13:35:29.843Z,1443533729.843 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T13:35:30.495Z,1443533730.495 [AHRS_sp3003D] Loaded
2015-09-29T13:35:30.496Z,1443533730.496 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T13:35:30.665Z,1443533730.665 [DataOverHttps] Loaded
2015-09-29T13:35:30.666Z,1443533730.666 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T13:35:30.679Z,1443533730.679 [Depth_Keller] Loaded
2015-09-29T13:35:30.680Z,1443533730.680 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T13:35:30.685Z,1443533730.685 [DropWeight] Loaded
2015-09-29T13:35:30.685Z,1443533730.685 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T13:35:30.829Z,1443533730.829 [DVL_micro] Loaded
2015-09-29T13:35:30.829Z,1443533730.829 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T13:35:30.928Z,1443533730.928 [NAL9602] Loaded
2015-09-29T13:35:30.928Z,1443533730.928 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T13:35:30.973Z,1443533730.973 [Onboard] Loaded
2015-09-29T13:35:30.973Z,1443533730.973 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T13:35:30.985Z,1443533730.985 [Radio_Surface] Loaded
2015-09-29T13:35:30.985Z,1443533730.985 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T13:35:30.986Z,1443533730.986 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T13:35:30.987Z,1443533730.987 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T13:35:31.134Z,1443533731.134 [DAT] Loaded
2015-09-29T13:35:31.134Z,1443533731.134 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T13:35:31.141Z,1443533731.141 [SCPI] Loaded
2015-09-29T13:35:31.141Z,1443533731.141 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T13:35:31.142Z,1443533731.142 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T13:35:31.143Z,1443533731.143 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T13:35:31.267Z,1443533731.267 [BuoyancyServo] Loaded
2015-09-29T13:35:31.268Z,1443533731.268 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T13:35:31.281Z,1443533731.281 [ElevatorServo] Loaded
2015-09-29T13:35:31.281Z,1443533731.281 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T13:35:31.293Z,1443533731.293 [MassServo] Loaded
2015-09-29T13:35:31.294Z,1443533731.294 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T13:35:31.306Z,1443533731.306 [RudderServo] Loaded
2015-09-29T13:35:31.306Z,1443533731.306 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T13:35:31.318Z,1443533731.318 [ThrusterServo] Loaded
2015-09-29T13:35:31.318Z,1443533731.318 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T13:35:31.319Z,1443533731.319 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T13:35:31.320Z,1443533731.320 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T13:35:31.507Z,1443533731.507 [InternalSim] Loaded
2015-09-29T13:35:31.507Z,1443533731.507 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T13:35:31.508Z,1443533731.508 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T13:35:31.508Z,1443533731.508 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T13:35:31.548Z,1443533731.548 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T13:35:31.553Z,1443533731.553 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T13:35:31.553Z,1443533731.553 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T13:35:31.560Z,1443533731.560 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T13:35:31.561Z,1443533731.561 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T13:35:31.562Z,1443533731.562 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T13:35:31.567Z,1443533731.567 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T13:35:31.567Z,1443533731.567 [Supervisor](DEBUG): Running supervisor.
2015-09-29T13:35:31.568Z,1443533731.568 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T13:35:31.570Z,1443533731.570 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T13:35:31.571Z,1443533731.571 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T13:35:31.572Z,1443533731.572 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T13:35:31.574Z,1443533731.574 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T13:35:31.574Z,1443533731.574 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T13:35:31.575Z,1443533731.575 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T13:35:31.575Z,1443533731.575 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T13:35:31.576Z,1443533731.576 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T13:35:31.577Z,1443533731.577 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T13:35:31.578Z,1443533731.578 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T13:35:31.579Z,1443533731.579 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T13:35:31.579Z,1443533731.579 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T13:35:31.580Z,1443533731.580 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T13:35:31.580Z,1443533731.580 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T13:35:31.580Z,1443533731.580 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T13:35:31.581Z,1443533731.581 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T13:35:31.581Z,1443533731.581 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T13:35:31.581Z,1443533731.581 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T13:35:31.582Z,1443533731.582 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T13:35:31.582Z,1443533731.582 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T13:35:31.583Z,1443533731.583 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T13:35:31.583Z,1443533731.583 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T13:35:31.584Z,1443533731.584 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:35:31.584Z,1443533731.584 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:35:31.585Z,1443533731.585 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T13:35:31.585Z,1443533731.585 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:35:31.586Z,1443533731.586 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:35:31.586Z,1443533731.586 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T13:35:31.586Z,1443533731.586 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T13:35:31.591Z,1443533731.591 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T13:35:31.609Z,1443533731.609 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T13:35:31.641Z,1443533731.641 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T13:35:31.702Z,1443533731.702 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T13:35:31.709Z,1443533731.709 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T13:35:31.748Z,1443533731.748 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T13:35:31.756Z,1443533731.756 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T13:35:31.758Z,1443533731.758 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T13:35:31.758Z,1443533731.758 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T13:35:31.758Z,1443533731.758 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T13:35:31.759Z,1443533731.759 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T13:35:31.759Z,1443533731.759 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T13:35:31.759Z,1443533731.759 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T13:35:31.759Z,1443533731.759 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T13:35:31.760Z,1443533731.760 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T13:35:31.786Z,1443533731.786 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T13:35:31.831Z,1443533731.831 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:35:31.861Z,1443533731.861 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T13:35:31.862Z,1443533731.862 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T13:35:31.921Z,1443533731.921 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T13:35:31.922Z,1443533731.922 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:35:31.949Z,1443533731.949 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T13:35:31.951Z,1443533731.951 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T13:35:31.974Z,1443533731.974 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T13:35:32.009Z,1443533732.009 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T13:35:32.015Z,1443533732.015 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T13:35:32.234Z,1443533732.234 [DVL_micro](INFO): Initializing
2015-09-29T13:35:32.410Z,1443533732.410 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:35:32.435Z,1443533732.435 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:35:32.560Z,1443533732.560 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T13:35:32.568Z,1443533732.568 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T13:35:32.584Z,1443533732.584 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T13:35:32.596Z,1443533732.596 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T13:35:32.604Z,1443533732.604 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T13:35:32.858Z,1443533732.858 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:35:32.859Z,1443533732.859 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:35:41.632Z,1443533741.632 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:41.948Z,1443533741.948 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:42.099Z,1443533742.099 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:42.499Z,1443533742.499 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T13:35:42.503Z,1443533742.503 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:42.897Z,1443533742.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:43.297Z,1443533743.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:43.697Z,1443533743.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:44.097Z,1443533744.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:44.497Z,1443533744.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:44.897Z,1443533744.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:45.296Z,1443533745.296 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:45.697Z,1443533745.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:46.098Z,1443533746.098 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:46.497Z,1443533746.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:46.897Z,1443533746.897 [NAL9602](INFO): No messages in MT queue
2015-09-29T13:35:46.898Z,1443533746.898 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:47.297Z,1443533747.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:47.697Z,1443533747.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:48.097Z,1443533748.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:48.497Z,1443533748.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:48.897Z,1443533748.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:49.297Z,1443533749.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:49.697Z,1443533749.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:50.097Z,1443533750.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:50.497Z,1443533750.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:50.897Z,1443533750.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:51.298Z,1443533751.298 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:51.698Z,1443533751.698 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:52.098Z,1443533752.098 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:52.148Z,1443533752.148 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T13:35:52.497Z,1443533752.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:52.897Z,1443533752.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:53.297Z,1443533753.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:53.698Z,1443533753.698 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:54.097Z,1443533754.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:54.497Z,1443533754.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:54.897Z,1443533754.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:55.297Z,1443533755.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:55.697Z,1443533755.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:35:56.098Z,1443533756.098 [D