2015-09-29T13:19:37.687Z,1443532777.687 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T13:19:37.691Z,1443532777.691 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T13:19:37.691Z,1443532777.691 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T13:19:37.692Z,1443532777.692 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T13:19:37.694Z,1443532777.694 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T13:19:37.694Z,1443532777.694 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T13:19:37.697Z,1443532777.697 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T13:19:37.709Z,1443532777.709 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T13:19:37.714Z,1443532777.714 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T13:19:37.714Z,1443532777.714 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T13:19:37.715Z,1443532777.715 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T13:19:37.718Z,1443532777.718 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T13:19:37.718Z,1443532777.718 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T13:19:37.720Z,1443532777.720 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T13:19:37.721Z,1443532777.721 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T13:19:37.724Z,1443532777.724 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T13:19:38.117Z,1443532778.117 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T13:19:38.118Z,1443532778.118 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T13:19:38.306Z,1443532778.306 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T13:19:38.308Z,1443532778.308 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T13:19:38.451Z,1443532778.451 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T13:19:38.451Z,1443532778.451 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T13:19:38.599Z,1443532778.599 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T13:19:38.599Z,1443532778.599 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T13:19:38.697Z,1443532778.697 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T13:19:38.914Z,1443532778.914 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T13:19:38.915Z,1443532778.915 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T13:19:39.010Z,1443532779.010 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T13:19:39.011Z,1443532779.011 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T13:19:39.323Z,1443532779.323 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T13:19:39.323Z,1443532779.323 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T13:19:39.719Z,1443532779.719 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T13:19:39.720Z,1443532779.720 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T13:19:40.071Z,1443532780.071 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T13:19:40.073Z,1443532780.073 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T13:19:40.664Z,1443532780.664 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T13:19:40.664Z,1443532780.664 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T13:19:40.891Z,1443532780.891 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T13:19:40.891Z,1443532780.891 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T13:19:41.002Z,1443532781.002 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T13:19:41.003Z,1443532781.003 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T13:19:41.514Z,1443532781.514 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T13:19:41.515Z,1443532781.515 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T13:19:41.689Z,1443532781.689 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T13:19:41.691Z,1443532781.691 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T13:19:41.691Z,1443532781.691 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T13:19:41.696Z,1443532781.696 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T13:19:41.768Z,1443532781.768 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T13:19:41.901Z,1443532781.901 [VerticalControl] Loaded
2015-09-29T13:19:41.901Z,1443532781.901 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T13:19:41.902Z,1443532781.902 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T13:19:41.982Z,1443532781.982 [HorizontalControl] Loaded
2015-09-29T13:19:41.982Z,1443532781.982 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T13:19:41.983Z,1443532781.983 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T13:19:41.988Z,1443532781.988 [SpeedControl] Loaded
2015-09-29T13:19:41.989Z,1443532781.989 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T13:19:41.989Z,1443532781.989 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T13:19:41.990Z,1443532781.990 [LoopControl] Loaded
2015-09-29T13:19:41.990Z,1443532781.990 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T13:19:41.991Z,1443532781.991 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T13:19:41.991Z,1443532781.991 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T13:19:42.147Z,1443532782.147 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T13:19:42.159Z,1443532782.159 [SBIT] Loaded
2015-09-29T13:19:42.159Z,1443532782.159 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T13:19:42.160Z,1443532782.160 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T13:19:42.194Z,1443532782.194 [IBIT] Loaded
2015-09-29T13:19:42.194Z,1443532782.194 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T13:19:42.196Z,1443532782.196 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T13:19:42.345Z,1443532782.345 [CBIT] Loaded
2015-09-29T13:19:42.345Z,1443532782.345 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T13:19:42.345Z,1443532782.345 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T13:19:42.350Z,1443532782.350 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T13:19:42.387Z,1443532782.387 [DepthRateCalculator] Loaded
2015-09-29T13:19:42.387Z,1443532782.387 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T13:19:42.397Z,1443532782.397 [PitchRateCalculator] Loaded
2015-09-29T13:19:42.397Z,1443532782.397 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T13:19:42.409Z,1443532782.409 [SpeedCalculator] Loaded
2015-09-29T13:19:42.409Z,1443532782.409 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T13:19:42.430Z,1443532782.430 [TempGradientCalculator] Loaded
2015-09-29T13:19:42.430Z,1443532782.430 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T13:19:42.447Z,1443532782.447 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T13:19:42.447Z,1443532782.447 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T13:19:42.453Z,1443532782.453 [YawRateCalculator] Loaded
2015-09-29T13:19:42.453Z,1443532782.453 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T13:19:42.453Z,1443532782.453 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T13:19:42.454Z,1443532782.454 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T13:19:42.579Z,1443532782.579 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T13:19:42.579Z,1443532782.579 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T13:19:42.580Z,1443532782.580 [StratificationFrontDetector] Loaded
2015-09-29T13:19:42.580Z,1443532782.580 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T13:19:42.580Z,1443532782.580 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T13:19:42.581Z,1443532782.581 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T13:19:42.869Z,1443532782.869 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T13:19:42.870Z,1443532782.870 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T13:19:42.997Z,1443532782.997 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T13:19:42.997Z,1443532782.997 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T13:19:43.060Z,1443532783.060 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T13:19:43.061Z,1443532783.061 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T13:19:43.078Z,1443532783.078 [NavChart] Loaded
2015-09-29T13:19:43.078Z,1443532783.078 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T13:19:43.084Z,1443532783.084 [UniversalFixResidualReporter] Loaded
2015-09-29T13:19:43.084Z,1443532783.084 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T13:19:43.084Z,1443532783.084 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T13:19:43.085Z,1443532783.085 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T13:19:43.098Z,1443532783.098 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T13:19:43.098Z,1443532783.098 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T13:19:43.398Z,1443532783.398 [CTD_NeilBrown] Loaded
2015-09-29T13:19:43.398Z,1443532783.398 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T13:19:43.402Z,1443532783.402 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T13:19:43.402Z,1443532783.402 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T13:19:43.415Z,1443532783.415 [ISUS] Loaded
2015-09-29T13:19:43.415Z,1443532783.415 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T13:19:43.430Z,1443532783.430 [PAR_Licor] Loaded
2015-09-29T13:19:43.430Z,1443532783.430 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T13:19:43.485Z,1443532783.485 [WetLabsBB2FL] Loaded
2015-09-29T13:19:43.485Z,1443532783.485 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T13:19:43.494Z,1443532783.494 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T13:19:43.494Z,1443532783.494 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T13:19:43.495Z,1443532783.495 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T13:19:43.495Z,1443532783.495 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T13:19:44.223Z,1443532784.223 [AHRS_sp3003D] Loaded
2015-09-29T13:19:44.223Z,1443532784.223 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T13:19:44.411Z,1443532784.411 [DataOverHttps] Loaded
2015-09-29T13:19:44.411Z,1443532784.411 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T13:19:44.424Z,1443532784.424 [Depth_Keller] Loaded
2015-09-29T13:19:44.425Z,1443532784.425 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T13:19:44.434Z,1443532784.434 [DropWeight] Loaded
2015-09-29T13:19:44.434Z,1443532784.434 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T13:19:44.584Z,1443532784.584 [DVL_micro] Loaded
2015-09-29T13:19:44.584Z,1443532784.584 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T13:19:44.692Z,1443532784.692 [NAL9602] Loaded
2015-09-29T13:19:44.692Z,1443532784.692 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T13:19:44.738Z,1443532784.738 [Onboard] Loaded
2015-09-29T13:19:44.739Z,1443532784.739 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T13:19:44.750Z,1443532784.750 [Radio_Surface] Loaded
2015-09-29T13:19:44.750Z,1443532784.750 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T13:19:44.754Z,1443532784.754 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T13:19:44.754Z,1443532784.754 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T13:19:44.907Z,1443532784.907 [DAT] Loaded
2015-09-29T13:19:44.908Z,1443532784.908 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T13:19:44.914Z,1443532784.914 [SCPI] Loaded
2015-09-29T13:19:44.915Z,1443532784.915 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T13:19:44.915Z,1443532784.915 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T13:19:44.916Z,1443532784.916 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T13:19:45.046Z,1443532785.046 [BuoyancyServo] Loaded
2015-09-29T13:19:45.046Z,1443532785.046 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T13:19:45.063Z,1443532785.063 [ElevatorServo] Loaded
2015-09-29T13:19:45.063Z,1443532785.063 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T13:19:45.075Z,1443532785.075 [MassServo] Loaded
2015-09-29T13:19:45.075Z,1443532785.075 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T13:19:45.087Z,1443532785.087 [RudderServo] Loaded
2015-09-29T13:19:45.087Z,1443532785.087 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T13:19:45.098Z,1443532785.098 [ThrusterServo] Loaded
2015-09-29T13:19:45.099Z,1443532785.099 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T13:19:45.099Z,1443532785.099 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T13:19:45.100Z,1443532785.100 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T13:19:45.299Z,1443532785.299 [InternalSim] Loaded
2015-09-29T13:19:45.300Z,1443532785.300 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T13:19:45.300Z,1443532785.300 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T13:19:45.301Z,1443532785.301 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T13:19:45.343Z,1443532785.343 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T13:19:45.347Z,1443532785.347 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T13:19:45.348Z,1443532785.348 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T13:19:45.355Z,1443532785.355 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T13:19:45.358Z,1443532785.358 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T13:19:45.358Z,1443532785.358 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T13:19:45.363Z,1443532785.363 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T13:19:45.363Z,1443532785.363 [Supervisor](DEBUG): Running supervisor.
2015-09-29T13:19:45.364Z,1443532785.364 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T13:19:45.370Z,1443532785.370 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T13:19:45.371Z,1443532785.371 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T13:19:45.371Z,1443532785.371 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T13:19:45.373Z,1443532785.373 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T13:19:45.374Z,1443532785.374 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T13:19:45.375Z,1443532785.375 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T13:19:45.375Z,1443532785.375 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T13:19:45.375Z,1443532785.375 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T13:19:45.377Z,1443532785.377 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T13:19:45.377Z,1443532785.377 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T13:19:45.378Z,1443532785.378 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T13:19:45.379Z,1443532785.379 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T13:19:45.380Z,1443532785.380 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T13:19:45.380Z,1443532785.380 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T13:19:45.380Z,1443532785.380 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T13:19:45.380Z,1443532785.380 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T13:19:45.381Z,1443532785.381 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T13:19:45.381Z,1443532785.381 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T13:19:45.381Z,1443532785.381 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T13:19:45.382Z,1443532785.382 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T13:19:45.382Z,1443532785.382 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T13:19:45.383Z,1443532785.383 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T13:19:45.384Z,1443532785.384 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:19:45.384Z,1443532785.384 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:19:45.384Z,1443532785.384 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T13:19:45.385Z,1443532785.385 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:19:45.385Z,1443532785.385 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:19:45.386Z,1443532785.386 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T13:19:45.386Z,1443532785.386 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T13:19:45.391Z,1443532785.391 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T13:19:45.422Z,1443532785.422 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T13:19:45.526Z,1443532785.526 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T13:19:45.587Z,1443532785.587 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T13:19:45.597Z,1443532785.597 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T13:19:45.609Z,1443532785.609 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T13:19:45.622Z,1443532785.622 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T13:19:45.637Z,1443532785.637 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T13:19:45.639Z,1443532785.639 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T13:19:45.639Z,1443532785.639 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T13:19:45.640Z,1443532785.640 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T13:19:45.640Z,1443532785.640 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T13:19:45.640Z,1443532785.640 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T13:19:45.640Z,1443532785.640 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T13:19:45.641Z,1443532785.641 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T13:19:45.641Z,1443532785.641 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T13:19:45.670Z,1443532785.670 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:19:45.712Z,1443532785.712 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T13:19:45.713Z,1443532785.713 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T13:19:45.775Z,1443532785.775 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T13:19:45.776Z,1443532785.776 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:19:45.818Z,1443532785.818 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T13:19:45.821Z,1443532785.821 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T13:19:45.843Z,1443532785.843 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T13:19:45.863Z,1443532785.863 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T13:19:45.868Z,1443532785.868 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T13:19:46.081Z,1443532786.081 [DVL_micro](INFO): Initializing
2015-09-29T13:19:46.243Z,1443532786.243 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:19:46.266Z,1443532786.266 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:19:46.370Z,1443532786.370 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T13:19:46.382Z,1443532786.382 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T13:19:46.395Z,1443532786.395 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T13:19:46.406Z,1443532786.406 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T13:19:46.423Z,1443532786.423 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T13:19:46.696Z,1443532786.696 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:19:46.697Z,1443532786.697 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:19:55.768Z,1443532795.768 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:19:56.112Z,1443532796.112 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:19:56.245Z,1443532796.245 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:19:56.645Z,1443532796.645 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003300
2015-09-29T13:19:56.648Z,1443532796.648 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:19:57.044Z,1443532797.044 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:19:57.443Z,1443532797.443 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:19:57.843Z,1443532797.843 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:19:58.244Z,1443532798.244 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:19:58.643Z,1443532798.643 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:19:59.043Z,1443532799.043 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:19:59.441Z,1443532799.441 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:19:59.843Z,1443532799.843 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:00.242Z,1443532800.242 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:00.643Z,1443532800.643 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:01.041Z,1443532801.041 [NAL9602](INFO): No messages in MT queue
2015-09-29T13:20:01.042Z,1443532801.042 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:01.442Z,1443532801.442 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:01.843Z,1443532801.843 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:02.242Z,1443532802.242 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:02.642Z,1443532802.642 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:03.043Z,1443532803.043 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:03.443Z,1443532803.443 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:03.842Z,1443532803.842 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:04.242Z,1443532804.242 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:04.643Z,1443532804.643 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:05.043Z,1443532805.043 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:05.442Z,1443532805.442 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:05.843Z,1443532805.843 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:05.867Z,1443532805.867 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T13:20:06.287Z,1443532806.287 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:06.642Z,1443532806.642 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:07.043Z,1443532807.043 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:07.443Z,1443532807.443 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:07.842Z,1443532807.842 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:08.242Z,1443532808.242 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:08.642Z,1443532808.642 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:09.043Z,1443532809.043 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:09.443Z,1443532809.443 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:09.844Z,1443532809.844 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:20:10.242Z,1443532810.242 [D