2015-09-29T13:11:45.094Z,1443532305.094 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T13:11:45.098Z,1443532305.098 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T13:11:45.099Z,1443532305.099 [SyncHandler](INFO): Protected caller Thread ID is 759
2015-09-29T13:11:45.099Z,1443532305.099 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T13:11:45.102Z,1443532305.102 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T13:11:45.103Z,1443532305.103 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 760
2015-09-29T13:11:45.105Z,1443532305.105 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T13:11:45.118Z,1443532305.118 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T13:11:45.122Z,1443532305.122 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T13:11:45.123Z,1443532305.123 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 761
2015-09-29T13:11:45.123Z,1443532305.123 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T13:11:45.126Z,1443532305.126 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T13:11:45.127Z,1443532305.127 [logger ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T13:11:45.129Z,1443532305.129 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T13:11:45.129Z,1443532305.129 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T13:11:45.133Z,1443532305.133 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T13:11:45.514Z,1443532305.514 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T13:11:45.515Z,1443532305.515 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T13:11:45.706Z,1443532305.706 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T13:11:45.708Z,1443532305.708 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T13:11:45.852Z,1443532305.852 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T13:11:45.852Z,1443532305.852 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T13:11:45.999Z,1443532305.999 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T13:11:45.000Z,1443532306.000 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T13:11:46.094Z,1443532306.094 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T13:11:46.315Z,1443532306.315 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T13:11:46.316Z,1443532306.316 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T13:11:46.411Z,1443532306.411 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T13:11:46.412Z,1443532306.412 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T13:11:46.727Z,1443532306.727 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T13:11:46.728Z,1443532306.728 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T13:11:47.128Z,1443532307.128 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T13:11:47.128Z,1443532307.128 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T13:11:47.484Z,1443532307.484 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T13:11:47.485Z,1443532307.485 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T13:11:48.082Z,1443532308.082 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T13:11:48.083Z,1443532308.083 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T13:11:48.315Z,1443532308.315 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T13:11:48.316Z,1443532308.316 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T13:11:48.430Z,1443532308.430 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T13:11:48.430Z,1443532308.430 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T13:11:48.958Z,1443532308.958 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T13:11:48.959Z,1443532308.959 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T13:11:49.082Z,1443532309.082 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T13:11:49.084Z,1443532309.084 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T13:11:49.084Z,1443532309.084 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T13:11:49.089Z,1443532309.089 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T13:11:49.163Z,1443532309.163 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T13:11:49.298Z,1443532309.298 [VerticalControl] Loaded
2015-09-29T13:11:49.299Z,1443532309.299 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T13:11:49.299Z,1443532309.299 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T13:11:49.381Z,1443532309.381 [HorizontalControl] Loaded
2015-09-29T13:11:49.381Z,1443532309.381 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T13:11:49.382Z,1443532309.382 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T13:11:49.388Z,1443532309.388 [SpeedControl] Loaded
2015-09-29T13:11:49.388Z,1443532309.388 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T13:11:49.389Z,1443532309.389 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T13:11:49.389Z,1443532309.389 [LoopControl] Loaded
2015-09-29T13:11:49.390Z,1443532309.390 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T13:11:49.394Z,1443532309.394 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T13:11:49.395Z,1443532309.395 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T13:11:49.553Z,1443532309.553 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T13:11:49.566Z,1443532309.566 [SBIT] Loaded
2015-09-29T13:11:49.566Z,1443532309.566 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T13:11:49.567Z,1443532309.567 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T13:11:49.601Z,1443532309.601 [IBIT] Loaded
2015-09-29T13:11:49.601Z,1443532309.601 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T13:11:49.603Z,1443532309.603 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T13:11:49.760Z,1443532309.760 [CBIT] Loaded
2015-09-29T13:11:49.760Z,1443532309.760 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T13:11:49.760Z,1443532309.760 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T13:11:49.761Z,1443532309.761 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T13:11:49.798Z,1443532309.798 [DepthRateCalculator] Loaded
2015-09-29T13:11:49.799Z,1443532309.799 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T13:11:49.808Z,1443532309.808 [PitchRateCalculator] Loaded
2015-09-29T13:11:49.809Z,1443532309.809 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T13:11:49.820Z,1443532309.820 [SpeedCalculator] Loaded
2015-09-29T13:11:49.821Z,1443532309.821 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T13:11:49.838Z,1443532309.838 [TempGradientCalculator] Loaded
2015-09-29T13:11:49.838Z,1443532309.838 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T13:11:49.860Z,1443532309.860 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T13:11:49.860Z,1443532309.860 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T13:11:49.866Z,1443532309.866 [YawRateCalculator] Loaded
2015-09-29T13:11:49.866Z,1443532309.866 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T13:11:49.867Z,1443532309.867 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T13:11:49.868Z,1443532309.868 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T13:11:49.993Z,1443532309.993 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T13:11:49.994Z,1443532309.994 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T13:11:49.994Z,1443532309.994 [StratificationFrontDetector] Loaded
2015-09-29T13:11:49.994Z,1443532309.994 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T13:11:49.995Z,1443532309.995 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T13:11:49.995Z,1443532309.995 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T13:11:50.288Z,1443532310.288 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T13:11:50.289Z,1443532310.289 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T13:11:50.418Z,1443532310.418 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T13:11:50.418Z,1443532310.418 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T13:11:50.483Z,1443532310.483 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T13:11:50.484Z,1443532310.484 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T13:11:50.502Z,1443532310.502 [NavChart] Loaded
2015-09-29T13:11:50.502Z,1443532310.502 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T13:11:50.507Z,1443532310.507 [UniversalFixResidualReporter] Loaded
2015-09-29T13:11:50.508Z,1443532310.508 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T13:11:50.508Z,1443532310.508 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T13:11:50.509Z,1443532310.509 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T13:11:50.517Z,1443532310.517 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T13:11:50.518Z,1443532310.518 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T13:11:50.820Z,1443532310.820 [CTD_NeilBrown] Loaded
2015-09-29T13:11:50.820Z,1443532310.820 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T13:11:50.822Z,1443532310.822 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T13:11:50.823Z,1443532310.823 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 808
2015-09-29T13:11:50.836Z,1443532310.836 [ISUS] Loaded
2015-09-29T13:11:50.836Z,1443532310.836 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T13:11:50.851Z,1443532310.851 [PAR_Licor] Loaded
2015-09-29T13:11:50.851Z,1443532310.851 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T13:11:50.911Z,1443532310.911 [WetLabsBB2FL] Loaded
2015-09-29T13:11:50.911Z,1443532310.911 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T13:11:50.914Z,1443532310.914 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T13:11:50.915Z,1443532310.915 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 809
2015-09-29T13:11:50.915Z,1443532310.915 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T13:11:50.916Z,1443532310.916 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T13:11:51.645Z,1443532311.645 [AHRS_sp3003D] Loaded
2015-09-29T13:11:51.645Z,1443532311.645 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T13:11:51.840Z,1443532311.840 [DataOverHttps] Loaded
2015-09-29T13:11:51.840Z,1443532311.840 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T13:11:51.853Z,1443532311.853 [Depth_Keller] Loaded
2015-09-29T13:11:51.854Z,1443532311.854 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T13:11:51.863Z,1443532311.863 [DropWeight] Loaded
2015-09-29T13:11:51.863Z,1443532311.863 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T13:11:52.016Z,1443532312.016 [DVL_micro] Loaded
2015-09-29T13:11:52.017Z,1443532312.017 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T13:11:52.125Z,1443532312.125 [NAL9602] Loaded
2015-09-29T13:11:52.126Z,1443532312.126 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T13:11:52.173Z,1443532312.173 [Onboard] Loaded
2015-09-29T13:11:52.173Z,1443532312.173 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T13:11:52.185Z,1443532312.185 [Radio_Surface] Loaded
2015-09-29T13:11:52.185Z,1443532312.185 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T13:11:52.194Z,1443532312.194 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T13:11:52.195Z,1443532312.195 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T13:11:52.355Z,1443532312.355 [DAT] Loaded
2015-09-29T13:11:52.355Z,1443532312.355 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T13:11:52.362Z,1443532312.362 [SCPI] Loaded
2015-09-29T13:11:52.362Z,1443532312.362 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T13:11:52.363Z,1443532312.363 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T13:11:52.364Z,1443532312.364 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T13:11:52.499Z,1443532312.499 [BuoyancyServo] Loaded
2015-09-29T13:11:52.499Z,1443532312.499 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T13:11:52.512Z,1443532312.512 [ElevatorServo] Loaded
2015-09-29T13:11:52.513Z,1443532312.513 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T13:11:52.525Z,1443532312.525 [MassServo] Loaded
2015-09-29T13:11:52.525Z,1443532312.525 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T13:11:52.537Z,1443532312.537 [RudderServo] Loaded
2015-09-29T13:11:52.537Z,1443532312.537 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T13:11:52.553Z,1443532312.553 [ThrusterServo] Loaded
2015-09-29T13:11:52.553Z,1443532312.553 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T13:11:52.553Z,1443532312.553 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T13:11:52.554Z,1443532312.554 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T13:11:52.759Z,1443532312.759 [InternalSim] Loaded
2015-09-29T13:11:52.760Z,1443532312.760 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T13:11:52.760Z,1443532312.760 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T13:11:52.761Z,1443532312.761 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T13:11:52.804Z,1443532312.804 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T13:11:52.808Z,1443532312.808 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T13:11:52.809Z,1443532312.809 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T13:11:52.820Z,1443532312.820 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T13:11:52.822Z,1443532312.822 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T13:11:52.823Z,1443532312.823 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T13:11:52.828Z,1443532312.828 [Supervisor](INFO): Main Thread ID is 758
2015-09-29T13:11:52.828Z,1443532312.828 [Supervisor](DEBUG): Running supervisor.
2015-09-29T13:11:52.828Z,1443532312.828 [CommandLine ThreadHandler](INFO): Handler Thread ID is 812
2015-09-29T13:11:52.835Z,1443532312.835 [controlThread ThreadHandler](INFO): Handler Thread ID is 813
2015-09-29T13:11:52.835Z,1443532312.835 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T13:11:52.836Z,1443532312.836 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T13:11:52.838Z,1443532312.838 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T13:11:52.839Z,1443532312.839 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T13:11:52.839Z,1443532312.839 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T13:11:52.840Z,1443532312.840 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T13:11:52.840Z,1443532312.840 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T13:11:52.842Z,1443532312.842 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T13:11:52.842Z,1443532312.842 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T13:11:52.843Z,1443532312.843 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T13:11:52.843Z,1443532312.843 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T13:11:52.844Z,1443532312.844 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T13:11:52.844Z,1443532312.844 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T13:11:52.845Z,1443532312.845 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T13:11:52.845Z,1443532312.845 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T13:11:52.845Z,1443532312.845 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T13:11:52.846Z,1443532312.846 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T13:11:52.846Z,1443532312.846 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T13:11:52.846Z,1443532312.846 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T13:11:52.847Z,1443532312.847 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T13:11:52.848Z,1443532312.848 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T13:11:52.848Z,1443532312.848 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:11:52.849Z,1443532312.849 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:11:52.849Z,1443532312.849 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T13:11:52.850Z,1443532312.850 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:11:52.850Z,1443532312.850 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:11:52.850Z,1443532312.850 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T13:11:52.851Z,1443532312.851 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T13:11:52.855Z,1443532312.855 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T13:11:52.891Z,1443532312.891 [logger ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T13:11:52.979Z,1443532312.979 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T13:11:53.054Z,1443532313.054 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T13:11:53.063Z,1443532313.063 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T13:11:53.074Z,1443532313.074 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T13:11:53.086Z,1443532313.086 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T13:11:53.094Z,1443532313.094 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T13:11:53.096Z,1443532313.096 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T13:11:53.096Z,1443532313.096 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T13:11:53.096Z,1443532313.096 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T13:11:53.097Z,1443532313.097 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T13:11:53.097Z,1443532313.097 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T13:11:53.097Z,1443532313.097 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T13:11:53.097Z,1443532313.097 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T13:11:53.098Z,1443532313.098 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T13:11:53.141Z,1443532313.141 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:11:53.176Z,1443532313.176 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T13:11:53.177Z,1443532313.177 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T13:11:53.259Z,1443532313.259 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T13:11:53.260Z,1443532313.260 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:11:53.286Z,1443532313.286 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T13:11:53.289Z,1443532313.289 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T13:11:53.311Z,1443532313.311 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T13:11:53.330Z,1443532313.330 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T13:11:53.336Z,1443532313.336 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T13:11:53.574Z,1443532313.574 [DVL_micro](INFO): Initializing
2015-09-29T13:11:53.727Z,1443532313.727 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:11:53.739Z,1443532313.739 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:11:53.851Z,1443532313.851 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T13:11:53.862Z,1443532313.862 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T13:11:53.872Z,1443532313.872 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T13:11:53.894Z,1443532313.894 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T13:11:53.918Z,1443532313.918 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T13:11:54.172Z,1443532314.172 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:11:54.173Z,1443532314.173 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:12:02.946Z,1443532322.946 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:03.275Z,1443532323.275 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:03.421Z,1443532323.421 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:03.821Z,1443532323.821 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T13:12:03.825Z,1443532323.825 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:04.220Z,1443532324.220 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:04.620Z,1443532324.620 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:05.019Z,1443532325.019 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:05.419Z,1443532325.419 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:05.819Z,1443532325.819 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:06.219Z,1443532326.219 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:06.627Z,1443532326.627 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:07.023Z,1443532327.023 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:07.424Z,1443532327.424 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:07.825Z,1443532327.825 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:08.224Z,1443532328.224 [NAL9602](INFO): No messages in MT queue
2015-09-29T13:12:08.225Z,1443532328.225 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:08.625Z,1443532328.625 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:09.022Z,1443532329.022 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:09.428Z,1443532329.428 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:09.829Z,1443532329.829 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:10.228Z,1443532330.228 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:10.629Z,1443532330.629 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:11.028Z,1443532331.028 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:11.419Z,1443532331.419 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:11.819Z,1443532331.819 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:12.219Z,1443532332.219 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:12.618Z,1443532332.618 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:13.019Z,1443532333.019 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:13.419Z,1443532333.419 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:13.433Z,1443532333.433 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T13:12:13.819Z,1443532333.819 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:14.219Z,1443532334.219 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:14.619Z,1443532334.619 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:15.020Z,1443532335.020 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:15.419Z,1443532335.419 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:15.819Z,1443532335.819 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:16.219Z,1443532336.219 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:16.619Z,1443532336.619 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:17.019Z,1443532337.019 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:12:17.420Z,1443532337.420 [D