2015-09-29T13:03:44.548Z,1443531824.548 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T13:03:44.551Z,1443531824.551 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T13:03:44.552Z,1443531824.552 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T13:03:44.553Z,1443531824.553 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T13:03:44.554Z,1443531824.554 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T13:03:44.554Z,1443531824.554 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T13:03:44.557Z,1443531824.557 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T13:03:44.569Z,1443531824.569 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T13:03:44.574Z,1443531824.574 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T13:03:44.574Z,1443531824.574 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T13:03:44.575Z,1443531824.575 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T13:03:44.578Z,1443531824.578 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T13:03:44.578Z,1443531824.578 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T13:03:44.580Z,1443531824.580 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T13:03:44.581Z,1443531824.581 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T13:03:44.584Z,1443531824.584 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T13:03:44.984Z,1443531824.984 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T13:03:44.986Z,1443531824.986 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T13:03:45.178Z,1443531825.178 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T13:03:45.180Z,1443531825.180 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T13:03:45.326Z,1443531825.326 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T13:03:45.327Z,1443531825.327 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T13:03:45.479Z,1443531825.479 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T13:03:45.479Z,1443531825.479 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T13:03:45.575Z,1443531825.575 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T13:03:45.802Z,1443531825.802 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T13:03:45.803Z,1443531825.803 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T13:03:45.902Z,1443531825.902 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T13:03:45.903Z,1443531825.903 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T13:03:46.223Z,1443531826.223 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T13:03:46.224Z,1443531826.224 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T13:03:46.631Z,1443531826.631 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T13:03:46.631Z,1443531826.631 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T13:03:46.999Z,1443531826.999 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T13:03:47.001Z,1443531827.001 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T13:03:47.603Z,1443531827.603 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T13:03:47.604Z,1443531827.604 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T13:03:47.843Z,1443531827.843 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T13:03:47.844Z,1443531827.844 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T13:03:47.967Z,1443531827.967 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T13:03:47.967Z,1443531827.967 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T13:03:48.499Z,1443531828.499 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T13:03:48.500Z,1443531828.500 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T13:03:48.627Z,1443531828.627 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T13:03:48.629Z,1443531828.629 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T13:03:48.629Z,1443531828.629 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T13:03:48.633Z,1443531828.633 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T13:03:48.709Z,1443531828.709 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T13:03:48.843Z,1443531828.843 [VerticalControl] Loaded
2015-09-29T13:03:48.843Z,1443531828.843 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T13:03:48.844Z,1443531828.844 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T13:03:48.925Z,1443531828.925 [HorizontalControl] Loaded
2015-09-29T13:03:48.925Z,1443531828.925 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T13:03:48.926Z,1443531828.926 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T13:03:48.932Z,1443531828.932 [SpeedControl] Loaded
2015-09-29T13:03:48.932Z,1443531828.932 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T13:03:48.933Z,1443531828.933 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T13:03:48.933Z,1443531828.933 [LoopControl] Loaded
2015-09-29T13:03:48.933Z,1443531828.933 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T13:03:48.938Z,1443531828.938 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T13:03:48.939Z,1443531828.939 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T13:03:49.097Z,1443531829.097 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T13:03:49.110Z,1443531829.110 [SBIT] Loaded
2015-09-29T13:03:49.110Z,1443531829.110 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T13:03:49.111Z,1443531829.111 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T13:03:49.145Z,1443531829.145 [IBIT] Loaded
2015-09-29T13:03:49.145Z,1443531829.145 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T13:03:49.147Z,1443531829.147 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T13:03:49.301Z,1443531829.301 [CBIT] Loaded
2015-09-29T13:03:49.302Z,1443531829.302 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T13:03:49.302Z,1443531829.302 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T13:03:49.303Z,1443531829.303 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T13:03:49.347Z,1443531829.347 [DepthRateCalculator] Loaded
2015-09-29T13:03:49.347Z,1443531829.347 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T13:03:49.353Z,1443531829.353 [PitchRateCalculator] Loaded
2015-09-29T13:03:49.353Z,1443531829.353 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T13:03:49.365Z,1443531829.365 [SpeedCalculator] Loaded
2015-09-29T13:03:49.365Z,1443531829.365 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T13:03:49.382Z,1443531829.382 [TempGradientCalculator] Loaded
2015-09-29T13:03:49.383Z,1443531829.383 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T13:03:49.404Z,1443531829.404 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T13:03:49.404Z,1443531829.404 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T13:03:49.409Z,1443531829.409 [YawRateCalculator] Loaded
2015-09-29T13:03:49.414Z,1443531829.414 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T13:03:49.414Z,1443531829.414 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T13:03:49.415Z,1443531829.415 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T13:03:49.536Z,1443531829.536 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T13:03:49.536Z,1443531829.536 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T13:03:49.536Z,1443531829.536 [StratificationFrontDetector] Loaded
2015-09-29T13:03:49.536Z,1443531829.536 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T13:03:49.537Z,1443531829.537 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T13:03:49.537Z,1443531829.537 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T13:03:49.831Z,1443531829.831 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T13:03:49.832Z,1443531829.832 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T13:03:49.964Z,1443531829.964 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T13:03:49.965Z,1443531829.965 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T13:03:50.025Z,1443531830.025 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T13:03:50.030Z,1443531830.030 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T13:03:50.048Z,1443531830.048 [NavChart] Loaded
2015-09-29T13:03:50.048Z,1443531830.048 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T13:03:50.053Z,1443531830.053 [UniversalFixResidualReporter] Loaded
2015-09-29T13:03:50.053Z,1443531830.053 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T13:03:50.054Z,1443531830.054 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T13:03:50.055Z,1443531830.055 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T13:03:50.063Z,1443531830.063 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T13:03:50.064Z,1443531830.064 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T13:03:50.367Z,1443531830.367 [CTD_NeilBrown] Loaded
2015-09-29T13:03:50.367Z,1443531830.367 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T13:03:50.370Z,1443531830.370 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T13:03:50.370Z,1443531830.370 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T13:03:50.383Z,1443531830.383 [ISUS] Loaded
2015-09-29T13:03:50.383Z,1443531830.383 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T13:03:50.398Z,1443531830.398 [PAR_Licor] Loaded
2015-09-29T13:03:50.399Z,1443531830.399 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T13:03:50.458Z,1443531830.458 [WetLabsBB2FL] Loaded
2015-09-29T13:03:50.459Z,1443531830.459 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T13:03:50.462Z,1443531830.462 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T13:03:50.462Z,1443531830.462 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T13:03:50.463Z,1443531830.463 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T13:03:50.463Z,1443531830.463 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T13:03:51.192Z,1443531831.192 [AHRS_sp3003D] Loaded
2015-09-29T13:03:51.192Z,1443531831.192 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T13:03:51.398Z,1443531831.398 [DataOverHttps] Loaded
2015-09-29T13:03:51.399Z,1443531831.399 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T13:03:51.412Z,1443531831.412 [Depth_Keller] Loaded
2015-09-29T13:03:51.412Z,1443531831.412 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T13:03:51.417Z,1443531831.417 [DropWeight] Loaded
2015-09-29T13:03:51.418Z,1443531831.418 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T13:03:51.574Z,1443531831.574 [DVL_micro] Loaded
2015-09-29T13:03:51.574Z,1443531831.574 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T13:03:51.682Z,1443531831.682 [NAL9602] Loaded
2015-09-29T13:03:51.683Z,1443531831.683 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T13:03:51.730Z,1443531831.730 [Onboard] Loaded
2015-09-29T13:03:51.730Z,1443531831.730 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T13:03:51.741Z,1443531831.741 [Radio_Surface] Loaded
2015-09-29T13:03:51.742Z,1443531831.742 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T13:03:51.743Z,1443531831.743 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T13:03:51.744Z,1443531831.744 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T13:03:51.903Z,1443531831.903 [DAT] Loaded
2015-09-29T13:03:51.903Z,1443531831.903 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T13:03:51.910Z,1443531831.910 [SCPI] Loaded
2015-09-29T13:03:51.910Z,1443531831.910 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T13:03:51.911Z,1443531831.911 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T13:03:51.911Z,1443531831.911 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T13:03:52.041Z,1443531832.041 [BuoyancyServo] Loaded
2015-09-29T13:03:52.041Z,1443531832.041 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T13:03:52.058Z,1443531832.058 [ElevatorServo] Loaded
2015-09-29T13:03:52.058Z,1443531832.058 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T13:03:52.070Z,1443531832.070 [MassServo] Loaded
2015-09-29T13:03:52.071Z,1443531832.071 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T13:03:52.082Z,1443531832.082 [RudderServo] Loaded
2015-09-29T13:03:52.083Z,1443531832.083 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T13:03:52.098Z,1443531832.098 [ThrusterServo] Loaded
2015-09-29T13:03:52.099Z,1443531832.099 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T13:03:52.099Z,1443531832.099 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T13:03:52.100Z,1443531832.100 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T13:03:52.304Z,1443531832.304 [InternalSim] Loaded
2015-09-29T13:03:52.304Z,1443531832.304 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T13:03:52.305Z,1443531832.305 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T13:03:52.306Z,1443531832.306 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T13:03:52.349Z,1443531832.349 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T13:03:52.353Z,1443531832.353 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T13:03:52.354Z,1443531832.354 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T13:03:52.365Z,1443531832.365 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T13:03:52.370Z,1443531832.370 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T13:03:52.370Z,1443531832.370 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T13:03:52.375Z,1443531832.375 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T13:03:52.375Z,1443531832.375 [Supervisor](DEBUG): Running supervisor.
2015-09-29T13:03:52.376Z,1443531832.376 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T13:03:52.382Z,1443531832.382 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T13:03:52.383Z,1443531832.383 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T13:03:52.384Z,1443531832.384 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T13:03:52.385Z,1443531832.385 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T13:03:52.386Z,1443531832.386 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T13:03:52.387Z,1443531832.387 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T13:03:52.387Z,1443531832.387 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T13:03:52.388Z,1443531832.388 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T13:03:52.389Z,1443531832.389 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T13:03:52.389Z,1443531832.389 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T13:03:52.390Z,1443531832.390 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T13:03:52.391Z,1443531832.391 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T13:03:52.392Z,1443531832.392 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T13:03:52.392Z,1443531832.392 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T13:03:52.392Z,1443531832.392 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T13:03:52.392Z,1443531832.392 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T13:03:52.393Z,1443531832.393 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T13:03:52.393Z,1443531832.393 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T13:03:52.393Z,1443531832.393 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T13:03:52.394Z,1443531832.394 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T13:03:52.395Z,1443531832.395 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T13:03:52.395Z,1443531832.395 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T13:03:52.396Z,1443531832.396 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:03:52.396Z,1443531832.396 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:03:52.396Z,1443531832.396 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T13:03:52.397Z,1443531832.397 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T13:03:52.397Z,1443531832.397 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T13:03:52.398Z,1443531832.398 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T13:03:52.398Z,1443531832.398 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T13:03:52.403Z,1443531832.403 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T13:03:52.438Z,1443531832.438 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T13:03:52.526Z,1443531832.526 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T13:03:52.596Z,1443531832.596 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T13:03:52.601Z,1443531832.601 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T13:03:52.614Z,1443531832.614 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T13:03:52.626Z,1443531832.626 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T13:03:52.645Z,1443531832.645 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T13:03:52.650Z,1443531832.650 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T13:03:52.651Z,1443531832.651 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T13:03:52.651Z,1443531832.651 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T13:03:52.651Z,1443531832.651 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T13:03:52.651Z,1443531832.651 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T13:03:52.651Z,1443531832.651 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T13:03:52.652Z,1443531832.652 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T13:03:52.652Z,1443531832.652 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T13:03:52.719Z,1443531832.719 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:03:52.729Z,1443531832.729 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T13:03:52.742Z,1443531832.742 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T13:03:52.813Z,1443531832.813 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T13:03:52.814Z,1443531832.814 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T13:03:52.833Z,1443531832.833 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T13:03:52.860Z,1443531832.860 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T13:03:52.886Z,1443531832.886 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T13:03:52.889Z,1443531832.889 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T13:03:52.909Z,1443531832.909 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T13:03:53.106Z,1443531833.106 [DVL_micro](INFO): Initializing
2015-09-29T13:03:53.278Z,1443531833.278 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:03:53.298Z,1443531833.298 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:03:53.398Z,1443531833.398 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T13:03:53.404Z,1443531833.404 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T13:03:53.422Z,1443531833.422 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T13:03:53.428Z,1443531833.428 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T13:03:53.442Z,1443531833.442 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T13:03:53.696Z,1443531833.696 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:03:53.697Z,1443531833.697 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T13:04:02.717Z,1443531842.717 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:03.073Z,1443531843.073 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:03.197Z,1443531843.197 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:03.597Z,1443531843.597 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T13:04:03.601Z,1443531843.601 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:03.996Z,1443531843.996 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:04.395Z,1443531844.395 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:04.796Z,1443531844.796 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:05.196Z,1443531845.196 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:05.595Z,1443531845.595 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:05.995Z,1443531845.995 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:06.394Z,1443531846.394 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:06.795Z,1443531846.795 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:07.194Z,1443531847.194 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:07.595Z,1443531847.595 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:07.993Z,1443531847.993 [NAL9602](INFO): No messages in MT queue
2015-09-29T13:04:07.994Z,1443531847.994 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:08.394Z,1443531848.394 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:08.796Z,1443531848.796 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:09.194Z,1443531849.194 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:09.594Z,1443531849.594 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:09.995Z,1443531849.995 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:10.395Z,1443531850.395 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:10.794Z,1443531850.794 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:11.195Z,1443531851.195 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:11.594Z,1443531851.594 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:11.994Z,1443531851.994 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:12.394Z,1443531852.394 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:12.795Z,1443531852.795 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:12.839Z,1443531852.839 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T13:04:13.195Z,1443531853.195 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:13.596Z,1443531853.596 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:13.994Z,1443531853.994 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:14.395Z,1443531854.395 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:14.795Z,1443531854.795 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:15.195Z,1443531855.195 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:15.595Z,1443531855.595 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:15.995Z,1443531855.995 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:16.395Z,1443531856.395 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:16.795Z,1443531856.795 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T13:04:17.195Z,1443531857.195 [D