2015-09-29T12:55:54.027Z,1443531354.027 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T12:55:54.030Z,1443531354.030 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T12:55:54.031Z,1443531354.031 [SyncHandler](INFO): Protected caller Thread ID is 762
2015-09-29T12:55:54.031Z,1443531354.031 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T12:55:54.034Z,1443531354.034 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T12:55:54.034Z,1443531354.034 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T12:55:54.037Z,1443531354.037 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T12:55:54.049Z,1443531354.049 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T12:55:54.054Z,1443531354.054 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T12:55:54.054Z,1443531354.054 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T12:55:54.055Z,1443531354.055 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T12:55:54.058Z,1443531354.058 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T12:55:54.058Z,1443531354.058 [logger ThreadHandler](INFO): Protected caller Thread ID is 765
2015-09-29T12:55:54.060Z,1443531354.060 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T12:55:54.061Z,1443531354.061 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T12:55:54.064Z,1443531354.064 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T12:55:54.456Z,1443531354.456 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T12:55:54.458Z,1443531354.458 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T12:55:54.650Z,1443531354.650 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T12:55:54.652Z,1443531354.652 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T12:55:54.799Z,1443531354.799 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T12:55:54.799Z,1443531354.799 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T12:55:54.947Z,1443531354.947 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T12:55:54.948Z,1443531354.948 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T12:55:55.042Z,1443531355.042 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T12:55:55.262Z,1443531355.262 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T12:55:55.263Z,1443531355.263 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T12:55:55.358Z,1443531355.358 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T12:55:55.359Z,1443531355.359 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T12:55:55.675Z,1443531355.675 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T12:55:55.675Z,1443531355.675 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T12:55:56.075Z,1443531356.075 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T12:55:56.075Z,1443531356.075 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T12:55:56.427Z,1443531356.427 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T12:55:56.429Z,1443531356.429 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T12:55:57.031Z,1443531357.031 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T12:55:57.032Z,1443531357.032 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T12:55:57.263Z,1443531357.263 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T12:55:57.263Z,1443531357.263 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T12:55:57.375Z,1443531357.375 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T12:55:57.375Z,1443531357.375 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T12:55:57.895Z,1443531357.895 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T12:55:57.895Z,1443531357.895 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T12:55:58.059Z,1443531358.059 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T12:55:58.061Z,1443531358.061 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T12:55:58.061Z,1443531358.061 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T12:55:58.065Z,1443531358.065 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T12:55:58.141Z,1443531358.141 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T12:55:58.277Z,1443531358.277 [VerticalControl] Loaded
2015-09-29T12:55:58.277Z,1443531358.277 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T12:55:58.282Z,1443531358.282 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T12:55:58.359Z,1443531358.359 [HorizontalControl] Loaded
2015-09-29T12:55:58.360Z,1443531358.360 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T12:55:58.360Z,1443531358.360 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T12:55:58.370Z,1443531358.370 [SpeedControl] Loaded
2015-09-29T12:55:58.371Z,1443531358.371 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T12:55:58.371Z,1443531358.371 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T12:55:58.372Z,1443531358.372 [LoopControl] Loaded
2015-09-29T12:55:58.372Z,1443531358.372 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T12:55:58.373Z,1443531358.373 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T12:55:58.373Z,1443531358.373 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T12:55:58.529Z,1443531358.529 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T12:55:58.546Z,1443531358.546 [SBIT] Loaded
2015-09-29T12:55:58.546Z,1443531358.546 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T12:55:58.547Z,1443531358.547 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T12:55:58.581Z,1443531358.581 [IBIT] Loaded
2015-09-29T12:55:58.581Z,1443531358.581 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T12:55:58.583Z,1443531358.583 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T12:55:58.738Z,1443531358.738 [CBIT] Loaded
2015-09-29T12:55:58.739Z,1443531358.739 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T12:55:58.739Z,1443531358.739 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T12:55:58.740Z,1443531358.740 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T12:55:58.777Z,1443531358.777 [DepthRateCalculator] Loaded
2015-09-29T12:55:58.778Z,1443531358.778 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T12:55:58.787Z,1443531358.787 [PitchRateCalculator] Loaded
2015-09-29T12:55:58.788Z,1443531358.788 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T12:55:58.799Z,1443531358.799 [SpeedCalculator] Loaded
2015-09-29T12:55:58.800Z,1443531358.800 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T12:55:58.817Z,1443531358.817 [TempGradientCalculator] Loaded
2015-09-29T12:55:58.817Z,1443531358.817 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T12:55:58.839Z,1443531358.839 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T12:55:58.839Z,1443531358.839 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T12:55:58.845Z,1443531358.845 [YawRateCalculator] Loaded
2015-09-29T12:55:58.845Z,1443531358.845 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T12:55:58.845Z,1443531358.845 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T12:55:58.846Z,1443531358.846 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T12:55:58.969Z,1443531358.969 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T12:55:58.969Z,1443531358.969 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T12:55:58.974Z,1443531358.974 [StratificationFrontDetector] Loaded
2015-09-29T12:55:58.974Z,1443531358.974 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T12:55:58.974Z,1443531358.974 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T12:55:58.975Z,1443531358.975 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T12:55:59.266Z,1443531359.266 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T12:55:59.267Z,1443531359.267 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T12:55:59.400Z,1443531359.400 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T12:55:59.401Z,1443531359.401 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T12:55:59.462Z,1443531359.462 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T12:55:59.462Z,1443531359.462 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T12:55:59.480Z,1443531359.480 [NavChart] Loaded
2015-09-29T12:55:59.480Z,1443531359.480 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T12:55:59.489Z,1443531359.489 [UniversalFixResidualReporter] Loaded
2015-09-29T12:55:59.490Z,1443531359.490 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T12:55:59.490Z,1443531359.490 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T12:55:59.491Z,1443531359.491 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T12:55:59.499Z,1443531359.499 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T12:55:59.500Z,1443531359.500 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T12:55:59.803Z,1443531359.803 [CTD_NeilBrown] Loaded
2015-09-29T12:55:59.804Z,1443531359.804 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T12:55:59.806Z,1443531359.806 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T12:55:59.806Z,1443531359.806 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T12:55:59.819Z,1443531359.819 [ISUS] Loaded
2015-09-29T12:55:59.819Z,1443531359.819 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T12:55:59.834Z,1443531359.834 [PAR_Licor] Loaded
2015-09-29T12:55:59.834Z,1443531359.834 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T12:55:59.894Z,1443531359.894 [WetLabsBB2FL] Loaded
2015-09-29T12:55:59.895Z,1443531359.895 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T12:55:59.898Z,1443531359.898 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T12:55:59.898Z,1443531359.898 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T12:55:59.899Z,1443531359.899 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T12:55:59.899Z,1443531359.899 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T12:56:00.629Z,1443531360.629 [AHRS_sp3003D] Loaded
2015-09-29T12:56:00.629Z,1443531360.629 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T12:56:00.820Z,1443531360.820 [DataOverHttps] Loaded
2015-09-29T12:56:00.821Z,1443531360.821 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T12:56:00.838Z,1443531360.838 [Depth_Keller] Loaded
2015-09-29T12:56:00.839Z,1443531360.839 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T12:56:00.844Z,1443531360.844 [DropWeight] Loaded
2015-09-29T12:56:00.844Z,1443531360.844 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T12:56:01.001Z,1443531361.001 [DVL_micro] Loaded
2015-09-29T12:56:01.001Z,1443531361.001 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T12:56:01.110Z,1443531361.110 [NAL9602] Loaded
2015-09-29T12:56:01.110Z,1443531361.110 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T12:56:01.157Z,1443531361.157 [Onboard] Loaded
2015-09-29T12:56:01.158Z,1443531361.158 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T12:56:01.169Z,1443531361.169 [Radio_Surface] Loaded
2015-09-29T12:56:01.170Z,1443531361.170 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T12:56:01.174Z,1443531361.174 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T12:56:01.174Z,1443531361.174 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T12:56:01.334Z,1443531361.334 [DAT] Loaded
2015-09-29T12:56:01.335Z,1443531361.335 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T12:56:01.341Z,1443531361.341 [SCPI] Loaded
2015-09-29T12:56:01.342Z,1443531361.342 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T12:56:01.342Z,1443531361.342 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T12:56:01.343Z,1443531361.343 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T12:56:01.478Z,1443531361.478 [BuoyancyServo] Loaded
2015-09-29T12:56:01.479Z,1443531361.479 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T12:56:01.492Z,1443531361.492 [ElevatorServo] Loaded
2015-09-29T12:56:01.492Z,1443531361.492 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T12:56:01.504Z,1443531361.504 [MassServo] Loaded
2015-09-29T12:56:01.504Z,1443531361.504 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T12:56:01.516Z,1443531361.516 [RudderServo] Loaded
2015-09-29T12:56:01.517Z,1443531361.517 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T12:56:01.532Z,1443531361.532 [ThrusterServo] Loaded
2015-09-29T12:56:01.532Z,1443531361.532 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T12:56:01.533Z,1443531361.533 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T12:56:01.533Z,1443531361.533 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T12:56:01.734Z,1443531361.734 [InternalSim] Loaded
2015-09-29T12:56:01.734Z,1443531361.734 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T12:56:01.735Z,1443531361.735 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T12:56:01.735Z,1443531361.735 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T12:56:01.774Z,1443531361.774 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T12:56:01.783Z,1443531361.783 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T12:56:01.784Z,1443531361.784 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T12:56:01.790Z,1443531361.790 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T12:56:01.794Z,1443531361.794 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T12:56:01.794Z,1443531361.794 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 814
2015-09-29T12:56:01.799Z,1443531361.799 [Supervisor](INFO): Main Thread ID is 761
2015-09-29T12:56:01.799Z,1443531361.799 [Supervisor](DEBUG): Running supervisor.
2015-09-29T12:56:01.800Z,1443531361.800 [CommandLine ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T12:56:01.806Z,1443531361.806 [controlThread ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T12:56:01.807Z,1443531361.807 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T12:56:01.807Z,1443531361.807 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T12:56:01.809Z,1443531361.809 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T12:56:01.810Z,1443531361.810 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T12:56:01.811Z,1443531361.811 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T12:56:01.811Z,1443531361.811 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T12:56:01.812Z,1443531361.812 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T12:56:01.813Z,1443531361.813 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T12:56:01.813Z,1443531361.813 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T12:56:01.814Z,1443531361.814 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T12:56:01.815Z,1443531361.815 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T12:56:01.816Z,1443531361.816 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T12:56:01.816Z,1443531361.816 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T12:56:01.816Z,1443531361.816 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T12:56:01.816Z,1443531361.816 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T12:56:01.817Z,1443531361.817 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T12:56:01.817Z,1443531361.817 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T12:56:01.817Z,1443531361.817 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T12:56:01.818Z,1443531361.818 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T12:56:01.818Z,1443531361.818 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T12:56:01.819Z,1443531361.819 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T12:56:01.820Z,1443531361.820 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T12:56:01.820Z,1443531361.820 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T12:56:01.820Z,1443531361.820 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T12:56:01.821Z,1443531361.821 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T12:56:01.821Z,1443531361.821 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T12:56:01.822Z,1443531361.822 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T12:56:01.822Z,1443531361.822 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T12:56:01.827Z,1443531361.827 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T12:56:01.850Z,1443531361.850 [logger ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T12:56:01.890Z,1443531361.890 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T12:56:01.962Z,1443531361.962 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T12:56:01.970Z,1443531361.970 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T12:56:02.038Z,1443531362.038 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T12:56:02.050Z,1443531362.050 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T12:56:02.129Z,1443531362.129 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T12:56:02.129Z,1443531362.129 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T12:56:02.129Z,1443531362.129 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T12:56:02.130Z,1443531362.130 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T12:56:02.130Z,1443531362.130 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T12:56:02.130Z,1443531362.130 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T12:56:02.130Z,1443531362.130 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T12:56:02.131Z,1443531362.131 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T12:56:02.133Z,1443531362.133 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T12:56:02.243Z,1443531362.243 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T12:56:02.253Z,1443531362.253 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T12:56:02.279Z,1443531362.279 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T12:56:02.339Z,1443531362.339 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T12:56:02.340Z,1443531362.340 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T12:56:02.380Z,1443531362.380 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T12:56:02.391Z,1443531362.391 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T12:56:02.397Z,1443531362.397 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T12:56:02.416Z,1443531362.416 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T12:56:02.423Z,1443531362.423 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T12:56:02.624Z,1443531362.624 [DVL_micro](INFO): Initializing
2015-09-29T12:56:02.771Z,1443531362.771 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:56:02.800Z,1443531362.800 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:56:02.908Z,1443531362.908 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T12:56:02.917Z,1443531362.917 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T12:56:02.934Z,1443531362.934 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T12:56:02.958Z,1443531362.958 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T12:56:02.963Z,1443531362.963 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T12:56:03.220Z,1443531363.220 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:56:03.221Z,1443531363.221 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:56:12.361Z,1443531372.361 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:12.701Z,1443531372.701 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:12.832Z,1443531372.832 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:13.233Z,1443531373.233 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T12:56:13.237Z,1443531373.237 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:13.631Z,1443531373.631 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:14.031Z,1443531374.031 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:14.431Z,1443531374.431 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:14.831Z,1443531374.831 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:15.230Z,1443531375.230 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:15.631Z,1443531375.631 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:16.030Z,1443531376.030 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:16.432Z,1443531376.432 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:16.831Z,1443531376.831 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:17.232Z,1443531377.232 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:17.631Z,1443531377.631 [NAL9602](INFO): No messages in MT queue
2015-09-29T12:56:17.632Z,1443531377.632 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:18.031Z,1443531378.031 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:18.431Z,1443531378.431 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:18.831Z,1443531378.831 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:19.231Z,1443531379.231 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:19.631Z,1443531379.631 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:20.040Z,1443531380.040 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:20.452Z,1443531380.452 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:20.833Z,1443531380.833 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:21.236Z,1443531381.236 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:21.636Z,1443531381.636 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:22.036Z,1443531382.036 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:22.433Z,1443531382.433 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:22.448Z,1443531382.448 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T12:56:22.832Z,1443531382.832 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:23.230Z,1443531383.230 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:23.630Z,1443531383.630 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:24.030Z,1443531384.030 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:24.431Z,1443531384.431 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:24.831Z,1443531384.831 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:25.231Z,1443531385.231 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:25.632Z,1443531385.632 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:26.032Z,1443531386.032 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:26.436Z,1443531386.436 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:56:26.830Z,1443531386.830 [D