2015-09-29T12:47:58.462Z,1443530878.462 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T12:47:58.466Z,1443530878.466 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T12:47:58.466Z,1443530878.466 [SyncHandler](INFO): Protected caller Thread ID is 762
2015-09-29T12:47:58.467Z,1443530878.467 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T12:47:58.468Z,1443530878.468 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T12:47:58.469Z,1443530878.469 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T12:47:58.471Z,1443530878.471 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T12:47:58.484Z,1443530878.484 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T12:47:58.488Z,1443530878.488 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T12:47:58.489Z,1443530878.489 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T12:47:58.489Z,1443530878.489 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T12:47:58.492Z,1443530878.492 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T12:47:58.493Z,1443530878.493 [logger ThreadHandler](INFO): Protected caller Thread ID is 765
2015-09-29T12:47:58.495Z,1443530878.495 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T12:47:58.495Z,1443530878.495 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T12:47:58.499Z,1443530878.499 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T12:47:58.881Z,1443530878.881 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T12:47:58.885Z,1443530878.885 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T12:47:59.077Z,1443530879.077 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T12:47:59.079Z,1443530879.079 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T12:47:59.221Z,1443530879.221 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T12:47:59.222Z,1443530879.222 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T12:47:59.369Z,1443530879.369 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T12:47:59.370Z,1443530879.370 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T12:47:59.468Z,1443530879.468 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T12:47:59.689Z,1443530879.689 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T12:47:59.690Z,1443530879.690 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T12:47:59.785Z,1443530879.785 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T12:47:59.786Z,1443530879.786 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T12:48:00.106Z,1443530880.106 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T12:48:00.106Z,1443530880.106 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T12:48:00.505Z,1443530880.505 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T12:48:00.506Z,1443530880.506 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T12:48:00.858Z,1443530880.858 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T12:48:00.860Z,1443530880.860 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T12:48:01.458Z,1443530881.458 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T12:48:01.459Z,1443530881.459 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T12:48:01.689Z,1443530881.689 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T12:48:01.690Z,1443530881.690 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T12:48:01.801Z,1443530881.801 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T12:48:01.802Z,1443530881.802 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T12:48:02.342Z,1443530882.342 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T12:48:02.343Z,1443530882.343 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T12:48:02.469Z,1443530882.469 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T12:48:02.471Z,1443530882.471 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T12:48:02.471Z,1443530882.471 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T12:48:02.476Z,1443530882.476 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T12:48:02.552Z,1443530882.552 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T12:48:02.687Z,1443530882.687 [VerticalControl] Loaded
2015-09-29T12:48:02.687Z,1443530882.687 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T12:48:02.688Z,1443530882.688 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T12:48:02.769Z,1443530882.769 [HorizontalControl] Loaded
2015-09-29T12:48:02.769Z,1443530882.769 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T12:48:02.770Z,1443530882.770 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T12:48:02.776Z,1443530882.776 [SpeedControl] Loaded
2015-09-29T12:48:02.776Z,1443530882.776 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T12:48:02.777Z,1443530882.777 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T12:48:02.777Z,1443530882.777 [LoopControl] Loaded
2015-09-29T12:48:02.778Z,1443530882.778 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T12:48:02.778Z,1443530882.778 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T12:48:02.779Z,1443530882.779 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T12:48:02.945Z,1443530882.945 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T12:48:02.961Z,1443530882.961 [SBIT] Loaded
2015-09-29T12:48:02.961Z,1443530882.961 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T12:48:02.962Z,1443530882.962 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T12:48:02.996Z,1443530882.996 [IBIT] Loaded
2015-09-29T12:48:02.996Z,1443530882.996 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T12:48:02.998Z,1443530882.998 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T12:48:03.154Z,1443530883.154 [CBIT] Loaded
2015-09-29T12:48:03.155Z,1443530883.155 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T12:48:03.155Z,1443530883.155 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T12:48:03.156Z,1443530883.156 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T12:48:03.194Z,1443530883.194 [DepthRateCalculator] Loaded
2015-09-29T12:48:03.194Z,1443530883.194 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T12:48:03.204Z,1443530883.204 [PitchRateCalculator] Loaded
2015-09-29T12:48:03.204Z,1443530883.204 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T12:48:03.215Z,1443530883.215 [SpeedCalculator] Loaded
2015-09-29T12:48:03.216Z,1443530883.216 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T12:48:03.233Z,1443530883.233 [TempGradientCalculator] Loaded
2015-09-29T12:48:03.233Z,1443530883.233 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T12:48:03.255Z,1443530883.255 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T12:48:03.255Z,1443530883.255 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T12:48:03.261Z,1443530883.261 [YawRateCalculator] Loaded
2015-09-29T12:48:03.261Z,1443530883.261 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T12:48:03.261Z,1443530883.261 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T12:48:03.262Z,1443530883.262 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T12:48:03.384Z,1443530883.384 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T12:48:03.384Z,1443530883.384 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T12:48:03.384Z,1443530883.384 [StratificationFrontDetector] Loaded
2015-09-29T12:48:03.385Z,1443530883.385 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T12:48:03.385Z,1443530883.385 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T12:48:03.386Z,1443530883.386 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T12:48:03.687Z,1443530883.687 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T12:48:03.688Z,1443530883.688 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T12:48:03.822Z,1443530883.822 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T12:48:03.822Z,1443530883.822 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T12:48:03.883Z,1443530883.883 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T12:48:03.884Z,1443530883.884 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T12:48:03.906Z,1443530883.906 [NavChart] Loaded
2015-09-29T12:48:03.906Z,1443530883.906 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T12:48:03.911Z,1443530883.911 [UniversalFixResidualReporter] Loaded
2015-09-29T12:48:03.911Z,1443530883.911 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T12:48:03.912Z,1443530883.912 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T12:48:03.913Z,1443530883.913 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T12:48:03.921Z,1443530883.921 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T12:48:03.922Z,1443530883.922 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T12:48:04.226Z,1443530884.226 [CTD_NeilBrown] Loaded
2015-09-29T12:48:04.227Z,1443530884.227 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T12:48:04.228Z,1443530884.228 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T12:48:04.229Z,1443530884.229 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T12:48:04.242Z,1443530884.242 [ISUS] Loaded
2015-09-29T12:48:04.242Z,1443530884.242 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T12:48:04.257Z,1443530884.257 [PAR_Licor] Loaded
2015-09-29T12:48:04.257Z,1443530884.257 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T12:48:04.318Z,1443530884.318 [WetLabsBB2FL] Loaded
2015-09-29T12:48:04.318Z,1443530884.318 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T12:48:04.320Z,1443530884.320 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T12:48:04.321Z,1443530884.321 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T12:48:04.321Z,1443530884.321 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T12:48:04.322Z,1443530884.322 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T12:48:05.060Z,1443530885.060 [AHRS_sp3003D] Loaded
2015-09-29T12:48:05.061Z,1443530885.061 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T12:48:05.253Z,1443530885.253 [DataOverHttps] Loaded
2015-09-29T12:48:05.254Z,1443530885.254 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T12:48:05.267Z,1443530885.267 [Depth_Keller] Loaded
2015-09-29T12:48:05.268Z,1443530885.268 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T12:48:05.277Z,1443530885.277 [DropWeight] Loaded
2015-09-29T12:48:05.277Z,1443530885.277 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T12:48:05.430Z,1443530885.430 [DVL_micro] Loaded
2015-09-29T12:48:05.430Z,1443530885.430 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T12:48:05.540Z,1443530885.540 [NAL9602] Loaded
2015-09-29T12:48:05.541Z,1443530885.541 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T12:48:05.588Z,1443530885.588 [Onboard] Loaded
2015-09-29T12:48:05.588Z,1443530885.588 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T12:48:05.600Z,1443530885.600 [Radio_Surface] Loaded
2015-09-29T12:48:05.604Z,1443530885.604 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T12:48:05.608Z,1443530885.608 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T12:48:05.609Z,1443530885.609 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T12:48:05.769Z,1443530885.769 [DAT] Loaded
2015-09-29T12:48:05.770Z,1443530885.770 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T12:48:05.777Z,1443530885.777 [SCPI] Loaded
2015-09-29T12:48:05.777Z,1443530885.777 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T12:48:05.778Z,1443530885.778 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T12:48:05.778Z,1443530885.778 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T12:48:05.914Z,1443530885.914 [BuoyancyServo] Loaded
2015-09-29T12:48:05.914Z,1443530885.914 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T12:48:05.931Z,1443530885.931 [ElevatorServo] Loaded
2015-09-29T12:48:05.932Z,1443530885.932 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T12:48:05.943Z,1443530885.943 [MassServo] Loaded
2015-09-29T12:48:05.944Z,1443530885.944 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T12:48:05.956Z,1443530885.956 [RudderServo] Loaded
2015-09-29T12:48:05.956Z,1443530885.956 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T12:48:05.971Z,1443530885.971 [ThrusterServo] Loaded
2015-09-29T12:48:05.972Z,1443530885.972 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T12:48:05.972Z,1443530885.972 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T12:48:05.973Z,1443530885.973 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T12:48:06.177Z,1443530886.177 [InternalSim] Loaded
2015-09-29T12:48:06.177Z,1443530886.177 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T12:48:06.178Z,1443530886.178 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T12:48:06.178Z,1443530886.178 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T12:48:06.222Z,1443530886.222 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T12:48:06.226Z,1443530886.226 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T12:48:06.227Z,1443530886.227 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T12:48:06.234Z,1443530886.234 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T12:48:06.236Z,1443530886.236 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T12:48:06.237Z,1443530886.237 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 814
2015-09-29T12:48:06.242Z,1443530886.242 [Supervisor](INFO): Main Thread ID is 761
2015-09-29T12:48:06.242Z,1443530886.242 [Supervisor](DEBUG): Running supervisor.
2015-09-29T12:48:06.242Z,1443530886.242 [CommandLine ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T12:48:06.249Z,1443530886.249 [controlThread ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T12:48:06.249Z,1443530886.249 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T12:48:06.250Z,1443530886.250 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T12:48:06.252Z,1443530886.252 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T12:48:06.253Z,1443530886.253 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T12:48:06.253Z,1443530886.253 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T12:48:06.254Z,1443530886.254 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T12:48:06.254Z,1443530886.254 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T12:48:06.256Z,1443530886.256 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T12:48:06.256Z,1443530886.256 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T12:48:06.257Z,1443530886.257 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T12:48:06.257Z,1443530886.257 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T12:48:06.258Z,1443530886.258 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T12:48:06.258Z,1443530886.258 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T12:48:06.259Z,1443530886.259 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T12:48:06.259Z,1443530886.259 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T12:48:06.259Z,1443530886.259 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T12:48:06.260Z,1443530886.260 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T12:48:06.260Z,1443530886.260 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T12:48:06.260Z,1443530886.260 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T12:48:06.261Z,1443530886.261 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T12:48:06.262Z,1443530886.262 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T12:48:06.262Z,1443530886.262 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T12:48:06.263Z,1443530886.263 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T12:48:06.263Z,1443530886.263 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T12:48:06.264Z,1443530886.264 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T12:48:06.264Z,1443530886.264 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T12:48:06.264Z,1443530886.264 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T12:48:06.265Z,1443530886.265 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T12:48:06.269Z,1443530886.269 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T12:48:06.305Z,1443530886.305 [logger ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T12:48:06.405Z,1443530886.405 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T12:48:06.413Z,1443530886.413 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T12:48:06.455Z,1443530886.455 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T12:48:06.465Z,1443530886.465 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T12:48:06.477Z,1443530886.477 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T12:48:06.498Z,1443530886.498 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T12:48:06.505Z,1443530886.505 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T12:48:06.505Z,1443530886.505 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T12:48:06.506Z,1443530886.506 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T12:48:06.506Z,1443530886.506 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T12:48:06.506Z,1443530886.506 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T12:48:06.506Z,1443530886.506 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T12:48:06.507Z,1443530886.507 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T12:48:06.507Z,1443530886.507 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T12:48:06.540Z,1443530886.540 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T12:48:06.580Z,1443530886.580 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T12:48:06.581Z,1443530886.581 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T12:48:06.649Z,1443530886.649 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T12:48:06.650Z,1443530886.650 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T12:48:06.704Z,1443530886.704 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T12:48:06.707Z,1443530886.707 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T12:48:06.733Z,1443530886.733 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T12:48:06.749Z,1443530886.749 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T12:48:06.755Z,1443530886.755 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T12:48:06.970Z,1443530886.970 [DVL_micro](INFO): Initializing
2015-09-29T12:48:07.141Z,1443530887.141 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:48:07.156Z,1443530887.156 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:48:07.277Z,1443530887.277 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T12:48:07.288Z,1443530887.288 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T12:48:07.300Z,1443530887.300 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T12:48:07.312Z,1443530887.312 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T12:48:07.328Z,1443530887.328 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T12:48:07.610Z,1443530887.610 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:48:07.611Z,1443530887.611 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:48:16.608Z,1443530896.608 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:16.924Z,1443530896.924 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:17.071Z,1443530897.071 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:17.472Z,1443530897.472 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T12:48:17.475Z,1443530897.475 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:17.871Z,1443530897.871 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:18.270Z,1443530898.270 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:18.670Z,1443530898.670 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:19.070Z,1443530899.070 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:19.470Z,1443530899.470 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:19.869Z,1443530899.869 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:20.269Z,1443530900.269 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:20.671Z,1443530900.671 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:21.069Z,1443530901.069 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:21.469Z,1443530901.469 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:21.868Z,1443530901.868 [NAL9602](INFO): No messages in MT queue
2015-09-29T12:48:21.869Z,1443530901.869 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:22.269Z,1443530902.269 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:22.669Z,1443530902.669 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:23.069Z,1443530903.069 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:23.470Z,1443530903.470 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:23.870Z,1443530903.870 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:24.270Z,1443530904.270 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:24.671Z,1443530904.671 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:25.070Z,1443530905.070 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:25.472Z,1443530905.472 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:25.875Z,1443530905.875 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:26.274Z,1443530906.274 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:26.672Z,1443530906.672 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:26.687Z,1443530906.687 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T12:48:27.071Z,1443530907.071 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:27.479Z,1443530907.479 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:27.872Z,1443530907.872 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:28.273Z,1443530908.273 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:28.669Z,1443530908.669 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:29.069Z,1443530909.069 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:29.469Z,1443530909.469 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:29.869Z,1443530909.869 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:30.270Z,1443530910.270 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:30.670Z,1443530910.670 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:48:31.069Z,1443530911.069 [D