2015-09-29T12:40:08.761Z,1443530408.761 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T12:40:08.764Z,1443530408.764 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T12:40:08.765Z,1443530408.765 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T12:40:08.765Z,1443530408.765 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T12:40:08.767Z,1443530408.767 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T12:40:08.768Z,1443530408.768 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T12:40:08.770Z,1443530408.770 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T12:40:08.782Z,1443530408.782 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T12:40:08.787Z,1443530408.787 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T12:40:08.788Z,1443530408.788 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T12:40:08.788Z,1443530408.788 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T12:40:08.791Z,1443530408.791 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T12:40:08.792Z,1443530408.792 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T12:40:08.794Z,1443530408.794 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T12:40:08.794Z,1443530408.794 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T12:40:08.798Z,1443530408.798 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T12:40:09.188Z,1443530409.188 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T12:40:09.190Z,1443530409.190 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T12:40:09.378Z,1443530409.378 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T12:40:09.380Z,1443530409.380 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T12:40:09.524Z,1443530409.524 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T12:40:09.525Z,1443530409.525 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T12:40:09.672Z,1443530409.672 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T12:40:09.673Z,1443530409.673 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T12:40:09.767Z,1443530409.767 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T12:40:09.988Z,1443530409.988 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T12:40:09.989Z,1443530409.989 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T12:40:10.084Z,1443530410.084 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T12:40:10.085Z,1443530410.085 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T12:40:10.396Z,1443530410.396 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T12:40:10.397Z,1443530410.397 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T12:40:10.792Z,1443530410.792 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T12:40:10.793Z,1443530410.793 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T12:40:11.144Z,1443530411.144 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T12:40:11.146Z,1443530411.146 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T12:40:11.743Z,1443530411.743 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T12:40:11.744Z,1443530411.744 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T12:40:11.993Z,1443530411.993 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T12:40:11.993Z,1443530411.993 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T12:40:12.108Z,1443530412.108 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T12:40:12.108Z,1443530412.108 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T12:40:12.616Z,1443530412.616 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T12:40:12.617Z,1443530412.617 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T12:40:12.739Z,1443530412.739 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T12:40:12.741Z,1443530412.741 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T12:40:12.741Z,1443530412.741 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T12:40:12.745Z,1443530412.745 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T12:40:12.819Z,1443530412.819 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T12:40:12.952Z,1443530412.952 [VerticalControl] Loaded
2015-09-29T12:40:12.952Z,1443530412.952 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T12:40:12.953Z,1443530412.953 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T12:40:13.032Z,1443530413.032 [HorizontalControl] Loaded
2015-09-29T12:40:13.033Z,1443530413.033 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T12:40:13.033Z,1443530413.033 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T12:40:13.039Z,1443530413.039 [SpeedControl] Loaded
2015-09-29T12:40:13.040Z,1443530413.040 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T12:40:13.040Z,1443530413.040 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T12:40:13.041Z,1443530413.041 [LoopControl] Loaded
2015-09-29T12:40:13.041Z,1443530413.041 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T12:40:13.041Z,1443530413.041 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T12:40:13.042Z,1443530413.042 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T12:40:13.200Z,1443530413.200 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T12:40:13.212Z,1443530413.212 [SBIT] Loaded
2015-09-29T12:40:13.213Z,1443530413.213 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T12:40:13.213Z,1443530413.213 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T12:40:13.247Z,1443530413.247 [IBIT] Loaded
2015-09-29T12:40:13.247Z,1443530413.247 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T12:40:13.249Z,1443530413.249 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T12:40:13.402Z,1443530413.402 [CBIT] Loaded
2015-09-29T12:40:13.402Z,1443530413.402 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T12:40:13.403Z,1443530413.403 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T12:40:13.404Z,1443530413.404 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T12:40:13.444Z,1443530413.444 [DepthRateCalculator] Loaded
2015-09-29T12:40:13.444Z,1443530413.444 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T12:40:13.450Z,1443530413.450 [PitchRateCalculator] Loaded
2015-09-29T12:40:13.450Z,1443530413.450 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T12:40:13.462Z,1443530413.462 [SpeedCalculator] Loaded
2015-09-29T12:40:13.462Z,1443530413.462 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T12:40:13.483Z,1443530413.483 [TempGradientCalculator] Loaded
2015-09-29T12:40:13.483Z,1443530413.483 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T12:40:13.500Z,1443530413.500 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T12:40:13.501Z,1443530413.501 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T12:40:13.506Z,1443530413.506 [YawRateCalculator] Loaded
2015-09-29T12:40:13.506Z,1443530413.506 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T12:40:13.507Z,1443530413.507 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T12:40:13.507Z,1443530413.507 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T12:40:13.631Z,1443530413.631 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T12:40:13.631Z,1443530413.631 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T12:40:13.631Z,1443530413.631 [StratificationFrontDetector] Loaded
2015-09-29T12:40:13.632Z,1443530413.632 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T12:40:13.632Z,1443530413.632 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T12:40:13.633Z,1443530413.633 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T12:40:13.909Z,1443530413.909 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T12:40:13.909Z,1443530413.909 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T12:40:14.041Z,1443530414.041 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T12:40:14.042Z,1443530414.042 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T12:40:14.101Z,1443530414.101 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T12:40:14.102Z,1443530414.102 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T12:40:14.123Z,1443530414.123 [NavChart] Loaded
2015-09-29T12:40:14.123Z,1443530414.123 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T12:40:14.129Z,1443530414.129 [UniversalFixResidualReporter] Loaded
2015-09-29T12:40:14.129Z,1443530414.129 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T12:40:14.129Z,1443530414.129 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T12:40:14.130Z,1443530414.130 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T12:40:14.138Z,1443530414.138 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T12:40:14.139Z,1443530414.139 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T12:40:14.439Z,1443530414.439 [CTD_NeilBrown] Loaded
2015-09-29T12:40:14.440Z,1443530414.440 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T12:40:14.443Z,1443530414.443 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T12:40:14.443Z,1443530414.443 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T12:40:14.456Z,1443530414.456 [ISUS] Loaded
2015-09-29T12:40:14.457Z,1443530414.457 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T12:40:14.475Z,1443530414.475 [PAR_Licor] Loaded
2015-09-29T12:40:14.475Z,1443530414.475 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T12:40:14.531Z,1443530414.531 [WetLabsBB2FL] Loaded
2015-09-29T12:40:14.531Z,1443530414.531 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T12:40:14.535Z,1443530414.535 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T12:40:14.536Z,1443530414.536 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T12:40:14.536Z,1443530414.536 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T12:40:14.537Z,1443530414.537 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T12:40:15.269Z,1443530415.269 [AHRS_sp3003D] Loaded
2015-09-29T12:40:15.269Z,1443530415.269 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T12:40:15.463Z,1443530415.463 [DataOverHttps] Loaded
2015-09-29T12:40:15.463Z,1443530415.463 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T12:40:15.476Z,1443530415.476 [Depth_Keller] Loaded
2015-09-29T12:40:15.477Z,1443530415.477 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T12:40:15.482Z,1443530415.482 [DropWeight] Loaded
2015-09-29T12:40:15.482Z,1443530415.482 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T12:40:15.636Z,1443530415.636 [DVL_micro] Loaded
2015-09-29T12:40:15.636Z,1443530415.636 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T12:40:15.740Z,1443530415.740 [NAL9602] Loaded
2015-09-29T12:40:15.740Z,1443530415.740 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T12:40:15.786Z,1443530415.786 [Onboard] Loaded
2015-09-29T12:40:15.787Z,1443530415.787 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T12:40:15.802Z,1443530415.802 [Radio_Surface] Loaded
2015-09-29T12:40:15.802Z,1443530415.802 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T12:40:15.807Z,1443530415.807 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T12:40:15.808Z,1443530415.808 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T12:40:15.966Z,1443530415.966 [DAT] Loaded
2015-09-29T12:40:15.966Z,1443530415.966 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T12:40:15.973Z,1443530415.973 [SCPI] Loaded
2015-09-29T12:40:15.973Z,1443530415.973 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T12:40:15.974Z,1443530415.974 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T12:40:15.974Z,1443530415.974 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T12:40:16.103Z,1443530416.103 [BuoyancyServo] Loaded
2015-09-29T12:40:16.103Z,1443530416.103 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T12:40:16.120Z,1443530416.120 [ElevatorServo] Loaded
2015-09-29T12:40:16.121Z,1443530416.121 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T12:40:16.132Z,1443530416.132 [MassServo] Loaded
2015-09-29T12:40:16.133Z,1443530416.133 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T12:40:16.144Z,1443530416.144 [RudderServo] Loaded
2015-09-29T12:40:16.145Z,1443530416.145 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T12:40:16.160Z,1443530416.160 [ThrusterServo] Loaded
2015-09-29T12:40:16.160Z,1443530416.160 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T12:40:16.161Z,1443530416.161 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T12:40:16.161Z,1443530416.161 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T12:40:16.362Z,1443530416.362 [InternalSim] Loaded
2015-09-29T12:40:16.362Z,1443530416.362 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T12:40:16.363Z,1443530416.363 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T12:40:16.364Z,1443530416.364 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T12:40:16.402Z,1443530416.402 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T12:40:16.411Z,1443530416.411 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T12:40:16.412Z,1443530416.412 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T12:40:16.418Z,1443530416.418 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T12:40:16.423Z,1443530416.423 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T12:40:16.424Z,1443530416.424 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T12:40:16.428Z,1443530416.428 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T12:40:16.429Z,1443530416.429 [Supervisor](DEBUG): Running supervisor.
2015-09-29T12:40:16.429Z,1443530416.429 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T12:40:16.436Z,1443530416.436 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T12:40:16.436Z,1443530416.436 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T12:40:16.437Z,1443530416.437 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T12:40:16.439Z,1443530416.439 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T12:40:16.440Z,1443530416.440 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T12:40:16.440Z,1443530416.440 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T12:40:16.441Z,1443530416.441 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T12:40:16.441Z,1443530416.441 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T12:40:16.442Z,1443530416.442 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T12:40:16.443Z,1443530416.443 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T12:40:16.444Z,1443530416.444 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T12:40:16.444Z,1443530416.444 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T12:40:16.445Z,1443530416.445 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T12:40:16.445Z,1443530416.445 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T12:40:16.445Z,1443530416.445 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T12:40:16.446Z,1443530416.446 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T12:40:16.446Z,1443530416.446 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T12:40:16.446Z,1443530416.446 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T12:40:16.447Z,1443530416.447 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T12:40:16.447Z,1443530416.447 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T12:40:16.448Z,1443530416.448 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T12:40:16.448Z,1443530416.448 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T12:40:16.449Z,1443530416.449 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T12:40:16.450Z,1443530416.450 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T12:40:16.450Z,1443530416.450 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T12:40:16.450Z,1443530416.450 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T12:40:16.451Z,1443530416.451 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T12:40:16.451Z,1443530416.451 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T12:40:16.451Z,1443530416.451 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T12:40:16.456Z,1443530416.456 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T12:40:16.492Z,1443530416.492 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T12:40:16.596Z,1443530416.596 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T12:40:16.664Z,1443530416.664 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T12:40:16.666Z,1443530416.666 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T12:40:16.683Z,1443530416.683 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T12:40:16.704Z,1443530416.704 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T12:40:16.757Z,1443530416.757 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T12:40:16.764Z,1443530416.764 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T12:40:16.764Z,1443530416.764 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T12:40:16.764Z,1443530416.764 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T12:40:16.764Z,1443530416.764 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T12:40:16.765Z,1443530416.765 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T12:40:16.765Z,1443530416.765 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T12:40:16.765Z,1443530416.765 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T12:40:16.765Z,1443530416.765 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T12:40:16.872Z,1443530416.872 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T12:40:16.896Z,1443530416.896 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T12:40:16.897Z,1443530416.897 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T12:40:16.948Z,1443530416.948 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T12:40:16.950Z,1443530416.950 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T12:40:16.996Z,1443530416.996 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T12:40:16.998Z,1443530416.998 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T12:40:17.021Z,1443530417.021 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T12:40:17.024Z,1443530417.024 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T12:40:17.052Z,1443530417.052 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T12:40:17.263Z,1443530417.263 [DVL_micro](INFO): Initializing
2015-09-29T12:40:17.416Z,1443530417.416 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:40:17.423Z,1443530417.423 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:40:17.540Z,1443530417.540 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T12:40:17.551Z,1443530417.551 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T12:40:17.563Z,1443530417.563 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T12:40:17.579Z,1443530417.579 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T12:40:17.591Z,1443530417.591 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T12:40:17.834Z,1443530417.834 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:40:17.835Z,1443530417.835 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:40:26.988Z,1443530426.988 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:27.347Z,1443530427.347 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:27.489Z,1443530427.489 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:27.866Z,1443530427.866 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T12:40:27.870Z,1443530427.870 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:28.264Z,1443530428.264 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:28.665Z,1443530428.665 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:29.064Z,1443530429.064 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:29.464Z,1443530429.464 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:29.864Z,1443530429.864 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:30.265Z,1443530430.265 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:30.675Z,1443530430.675 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:31.065Z,1443530431.065 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:31.464Z,1443530431.464 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:31.864Z,1443530431.864 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:32.263Z,1443530432.263 [NAL9602](INFO): No messages in MT queue
2015-09-29T12:40:32.264Z,1443530432.264 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:32.664Z,1443530432.664 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:33.064Z,1443530433.064 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:33.465Z,1443530433.465 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:33.864Z,1443530433.864 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:34.264Z,1443530434.264 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:34.664Z,1443530434.664 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:35.064Z,1443530435.064 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:35.463Z,1443530435.463 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:35.864Z,1443530435.864 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:36.264Z,1443530436.264 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:36.664Z,1443530436.664 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:37.064Z,1443530437.064 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:37.079Z,1443530437.079 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T12:40:37.464Z,1443530437.464 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:37.869Z,1443530437.869 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:38.274Z,1443530438.274 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:38.674Z,1443530438.674 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:39.069Z,1443530439.069 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:39.469Z,1443530439.469 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:39.868Z,1443530439.868 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:40.269Z,1443530440.269 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:40.669Z,1443530440.669 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:41.070Z,1443530441.070 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:40:41.470Z,1443530441.470 [D