2015-09-29T12:24:13.878Z,1443529453.878 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T12:24:13.881Z,1443529453.881 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T12:24:13.882Z,1443529453.882 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T12:24:13.882Z,1443529453.882 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T12:24:13.884Z,1443529453.884 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T12:24:13.884Z,1443529453.884 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T12:24:13.887Z,1443529453.887 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T12:24:13.899Z,1443529453.899 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T12:24:13.904Z,1443529453.904 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T12:24:13.904Z,1443529453.904 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T12:24:13.905Z,1443529453.905 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T12:24:13.908Z,1443529453.908 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T12:24:13.908Z,1443529453.908 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T12:24:13.910Z,1443529453.910 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T12:24:13.911Z,1443529453.911 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T12:24:13.915Z,1443529453.915 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T12:24:14.305Z,1443529454.305 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T12:24:14.307Z,1443529454.307 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T12:24:14.500Z,1443529454.500 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T12:24:14.502Z,1443529454.502 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T12:24:14.649Z,1443529454.649 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T12:24:14.649Z,1443529454.649 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T12:24:14.797Z,1443529454.797 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T12:24:14.797Z,1443529454.797 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T12:24:14.892Z,1443529454.892 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T12:24:15.111Z,1443529455.111 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T12:24:15.111Z,1443529455.111 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T12:24:15.207Z,1443529455.207 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T12:24:15.208Z,1443529455.208 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T12:24:15.521Z,1443529455.521 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T12:24:15.522Z,1443529455.522 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T12:24:15.921Z,1443529455.921 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T12:24:15.922Z,1443529455.922 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T12:24:16.273Z,1443529456.273 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T12:24:16.275Z,1443529456.275 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T12:24:16.870Z,1443529456.870 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T12:24:16.870Z,1443529456.870 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T12:24:17.101Z,1443529457.101 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T12:24:17.102Z,1443529457.102 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T12:24:17.217Z,1443529457.217 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T12:24:17.218Z,1443529457.218 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T12:24:17.732Z,1443529457.732 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T12:24:17.733Z,1443529457.733 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T12:24:17.923Z,1443529457.923 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T12:24:17.925Z,1443529457.925 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T12:24:17.926Z,1443529457.926 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T12:24:17.930Z,1443529457.930 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T12:24:18.004Z,1443529458.004 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T12:24:18.139Z,1443529458.139 [VerticalControl] Loaded
2015-09-29T12:24:18.139Z,1443529458.139 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T12:24:18.140Z,1443529458.140 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T12:24:18.221Z,1443529458.221 [HorizontalControl] Loaded
2015-09-29T12:24:18.222Z,1443529458.222 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T12:24:18.222Z,1443529458.222 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T12:24:18.228Z,1443529458.228 [SpeedControl] Loaded
2015-09-29T12:24:18.229Z,1443529458.229 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T12:24:18.229Z,1443529458.229 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T12:24:18.230Z,1443529458.230 [LoopControl] Loaded
2015-09-29T12:24:18.230Z,1443529458.230 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T12:24:18.231Z,1443529458.231 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T12:24:18.231Z,1443529458.231 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T12:24:18.394Z,1443529458.394 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T12:24:18.406Z,1443529458.406 [SBIT] Loaded
2015-09-29T12:24:18.406Z,1443529458.406 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T12:24:18.407Z,1443529458.407 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T12:24:18.441Z,1443529458.441 [IBIT] Loaded
2015-09-29T12:24:18.441Z,1443529458.441 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T12:24:18.443Z,1443529458.443 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T12:24:18.599Z,1443529458.599 [CBIT] Loaded
2015-09-29T12:24:18.599Z,1443529458.599 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T12:24:18.600Z,1443529458.600 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T12:24:18.600Z,1443529458.600 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T12:24:18.642Z,1443529458.642 [DepthRateCalculator] Loaded
2015-09-29T12:24:18.642Z,1443529458.642 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T12:24:18.647Z,1443529458.647 [PitchRateCalculator] Loaded
2015-09-29T12:24:18.648Z,1443529458.648 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T12:24:18.659Z,1443529458.659 [SpeedCalculator] Loaded
2015-09-29T12:24:18.659Z,1443529458.659 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T12:24:18.681Z,1443529458.681 [TempGradientCalculator] Loaded
2015-09-29T12:24:18.681Z,1443529458.681 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T12:24:18.698Z,1443529458.698 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T12:24:18.699Z,1443529458.699 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T12:24:18.704Z,1443529458.704 [YawRateCalculator] Loaded
2015-09-29T12:24:18.704Z,1443529458.704 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T12:24:18.705Z,1443529458.705 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T12:24:18.706Z,1443529458.706 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T12:24:18.829Z,1443529458.829 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T12:24:18.829Z,1443529458.829 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T12:24:18.830Z,1443529458.830 [StratificationFrontDetector] Loaded
2015-09-29T12:24:18.830Z,1443529458.830 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T12:24:18.831Z,1443529458.831 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T12:24:18.831Z,1443529458.831 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T12:24:19.124Z,1443529459.124 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T12:24:19.125Z,1443529459.125 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T12:24:19.258Z,1443529459.258 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T12:24:19.258Z,1443529459.258 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T12:24:19.319Z,1443529459.319 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T12:24:19.319Z,1443529459.319 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T12:24:19.341Z,1443529459.341 [NavChart] Loaded
2015-09-29T12:24:19.341Z,1443529459.341 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T12:24:19.346Z,1443529459.346 [UniversalFixResidualReporter] Loaded
2015-09-29T12:24:19.347Z,1443529459.347 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T12:24:19.347Z,1443529459.347 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T12:24:19.348Z,1443529459.348 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T12:24:19.356Z,1443529459.356 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T12:24:19.357Z,1443529459.357 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T12:24:19.658Z,1443529459.658 [CTD_NeilBrown] Loaded
2015-09-29T12:24:19.658Z,1443529459.658 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T12:24:19.660Z,1443529459.660 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T12:24:19.660Z,1443529459.660 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T12:24:19.673Z,1443529459.673 [ISUS] Loaded
2015-09-29T12:24:19.674Z,1443529459.674 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T12:24:19.688Z,1443529459.688 [PAR_Licor] Loaded
2015-09-29T12:24:19.689Z,1443529459.689 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T12:24:19.749Z,1443529459.749 [WetLabsBB2FL] Loaded
2015-09-29T12:24:19.749Z,1443529459.749 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T12:24:19.752Z,1443529459.752 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T12:24:19.752Z,1443529459.752 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T12:24:19.753Z,1443529459.753 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T12:24:19.754Z,1443529459.754 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T12:24:20.482Z,1443529460.482 [AHRS_sp3003D] Loaded
2015-09-29T12:24:20.482Z,1443529460.482 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T12:24:20.677Z,1443529460.677 [DataOverHttps] Loaded
2015-09-29T12:24:20.677Z,1443529460.677 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T12:24:20.691Z,1443529460.691 [Depth_Keller] Loaded
2015-09-29T12:24:20.691Z,1443529460.691 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T12:24:20.696Z,1443529460.696 [DropWeight] Loaded
2015-09-29T12:24:20.696Z,1443529460.696 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T12:24:20.853Z,1443529460.853 [DVL_micro] Loaded
2015-09-29T12:24:20.854Z,1443529460.854 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T12:24:20.963Z,1443529460.963 [NAL9602] Loaded
2015-09-29T12:24:20.963Z,1443529460.963 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T12:24:21.010Z,1443529461.010 [Onboard] Loaded
2015-09-29T12:24:21.011Z,1443529461.011 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T12:24:21.022Z,1443529461.022 [Radio_Surface] Loaded
2015-09-29T12:24:21.023Z,1443529461.023 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T12:24:21.028Z,1443529461.028 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T12:24:21.028Z,1443529461.028 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T12:24:21.189Z,1443529461.189 [DAT] Loaded
2015-09-29T12:24:21.189Z,1443529461.189 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T12:24:21.196Z,1443529461.196 [SCPI] Loaded
2015-09-29T12:24:21.196Z,1443529461.196 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T12:24:21.197Z,1443529461.197 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T12:24:21.197Z,1443529461.197 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T12:24:21.333Z,1443529461.333 [BuoyancyServo] Loaded
2015-09-29T12:24:21.333Z,1443529461.333 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T12:24:21.346Z,1443529461.346 [ElevatorServo] Loaded
2015-09-29T12:24:21.346Z,1443529461.346 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T12:24:21.358Z,1443529461.358 [MassServo] Loaded
2015-09-29T12:24:21.358Z,1443529461.358 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T12:24:21.370Z,1443529461.370 [RudderServo] Loaded
2015-09-29T12:24:21.371Z,1443529461.371 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T12:24:21.386Z,1443529461.386 [ThrusterServo] Loaded
2015-09-29T12:24:21.386Z,1443529461.386 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T12:24:21.387Z,1443529461.387 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T12:24:21.388Z,1443529461.388 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T12:24:21.585Z,1443529461.585 [InternalSim] Loaded
2015-09-29T12:24:21.585Z,1443529461.585 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T12:24:21.586Z,1443529461.586 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T12:24:21.587Z,1443529461.587 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T12:24:21.630Z,1443529461.630 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T12:24:21.634Z,1443529461.634 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T12:24:21.635Z,1443529461.635 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T12:24:21.646Z,1443529461.646 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T12:24:21.648Z,1443529461.648 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T12:24:21.648Z,1443529461.648 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T12:24:21.653Z,1443529461.653 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T12:24:21.653Z,1443529461.653 [Supervisor](DEBUG): Running supervisor.
2015-09-29T12:24:21.654Z,1443529461.654 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T12:24:21.660Z,1443529461.660 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T12:24:21.661Z,1443529461.661 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T12:24:21.662Z,1443529461.662 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T12:24:21.664Z,1443529461.664 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T12:24:21.664Z,1443529461.664 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T12:24:21.665Z,1443529461.665 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T12:24:21.665Z,1443529461.665 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T12:24:21.666Z,1443529461.666 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T12:24:21.667Z,1443529461.667 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T12:24:21.668Z,1443529461.668 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T12:24:21.669Z,1443529461.669 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T12:24:21.669Z,1443529461.669 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T12:24:21.670Z,1443529461.670 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T12:24:21.670Z,1443529461.670 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T12:24:21.670Z,1443529461.670 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T12:24:21.671Z,1443529461.671 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T12:24:21.671Z,1443529461.671 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T12:24:21.671Z,1443529461.671 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T12:24:21.672Z,1443529461.672 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T12:24:21.672Z,1443529461.672 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T12:24:21.673Z,1443529461.673 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T12:24:21.673Z,1443529461.673 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T12:24:21.674Z,1443529461.674 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T12:24:21.674Z,1443529461.674 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T12:24:21.675Z,1443529461.675 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T12:24:21.675Z,1443529461.675 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T12:24:21.676Z,1443529461.676 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T12:24:21.676Z,1443529461.676 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T12:24:21.676Z,1443529461.676 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T12:24:21.682Z,1443529461.682 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T12:24:21.704Z,1443529461.704 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T12:24:21.744Z,1443529461.744 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T12:24:21.836Z,1443529461.836 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T12:24:21.851Z,1443529461.851 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T12:24:21.865Z,1443529461.865 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T12:24:21.872Z,1443529461.872 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T12:24:21.901Z,1443529461.901 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T12:24:21.912Z,1443529461.912 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T12:24:21.917Z,1443529461.917 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T12:24:21.920Z,1443529461.920 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T12:24:21.968Z,1443529461.968 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T12:24:21.969Z,1443529461.969 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T12:24:21.969Z,1443529461.969 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T12:24:21.969Z,1443529461.969 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T12:24:21.969Z,1443529461.969 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T12:24:21.970Z,1443529461.970 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T12:24:21.970Z,1443529461.970 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T12:24:21.970Z,1443529461.970 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T12:24:21.993Z,1443529461.993 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T12:24:22.000Z,1443529462.000 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T12:24:22.033Z,1443529462.033 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T12:24:22.049Z,1443529462.049 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T12:24:22.072Z,1443529462.072 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T12:24:22.075Z,1443529462.075 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T12:24:22.081Z,1443529462.081 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T12:24:22.341Z,1443529462.341 [DVL_micro](INFO): Initializing
2015-09-29T12:24:22.496Z,1443529462.496 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:24:22.509Z,1443529462.509 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:24:22.624Z,1443529462.624 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T12:24:22.636Z,1443529462.636 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T12:24:22.648Z,1443529462.648 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T12:24:22.660Z,1443529462.660 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T12:24:22.685Z,1443529462.685 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T12:24:22.918Z,1443529462.918 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:24:22.920Z,1443529462.920 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:24:31.987Z,1443529471.987 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:32.302Z,1443529472.302 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:32.443Z,1443529472.443 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:32.843Z,1443529472.843 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T12:24:32.847Z,1443529472.847 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:33.241Z,1443529473.241 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:33.642Z,1443529473.642 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:34.041Z,1443529474.041 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:34.442Z,1443529474.442 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:34.841Z,1443529474.841 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:35.241Z,1443529475.241 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:35.640Z,1443529475.640 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:36.041Z,1443529476.041 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:36.446Z,1443529476.446 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:36.848Z,1443529476.848 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:37.246Z,1443529477.246 [NAL9602](INFO): No messages in MT queue
2015-09-29T12:24:37.247Z,1443529477.247 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:37.648Z,1443529477.648 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:38.048Z,1443529478.048 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:38.446Z,1443529478.446 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:38.851Z,1443529478.851 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:39.246Z,1443529479.246 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:39.641Z,1443529479.641 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:40.040Z,1443529480.040 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:40.441Z,1443529480.441 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:40.840Z,1443529480.840 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:41.241Z,1443529481.241 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:41.641Z,1443529481.641 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:42.040Z,1443529482.040 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:42.074Z,1443529482.074 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T12:24:42.441Z,1443529482.441 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:42.841Z,1443529482.841 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:43.241Z,1443529483.241 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:43.640Z,1443529483.640 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:44.040Z,1443529484.040 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:44.441Z,1443529484.441 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:44.842Z,1443529484.842 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:45.241Z,1443529485.241 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:45.641Z,1443529485.641 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:46.041Z,1443529486.041 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:24:46.441Z,1443529486.441 [D