2015-09-29T12:08:26.012Z,1443528506.012 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T12:08:26.016Z,1443528506.016 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T12:08:26.016Z,1443528506.016 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T12:08:26.017Z,1443528506.017 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T12:08:26.020Z,1443528506.020 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T12:08:26.020Z,1443528506.020 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T12:08:26.023Z,1443528506.023 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T12:08:26.036Z,1443528506.036 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T12:08:26.040Z,1443528506.040 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T12:08:26.040Z,1443528506.040 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T12:08:26.041Z,1443528506.041 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T12:08:26.044Z,1443528506.044 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T12:08:26.044Z,1443528506.044 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T12:08:26.046Z,1443528506.046 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T12:08:26.047Z,1443528506.047 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T12:08:26.051Z,1443528506.051 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T12:08:26.445Z,1443528506.445 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T12:08:26.447Z,1443528506.447 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T12:08:26.641Z,1443528506.641 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T12:08:26.643Z,1443528506.643 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T12:08:26.785Z,1443528506.785 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T12:08:26.785Z,1443528506.785 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T12:08:26.933Z,1443528506.933 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T12:08:26.933Z,1443528506.933 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T12:08:27.032Z,1443528507.032 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T12:08:27.253Z,1443528507.253 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T12:08:27.253Z,1443528507.253 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T12:08:27.348Z,1443528507.348 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T12:08:27.349Z,1443528507.349 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T12:08:27.665Z,1443528507.665 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T12:08:27.666Z,1443528507.666 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T12:08:28.065Z,1443528508.065 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T12:08:28.066Z,1443528508.066 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T12:08:28.417Z,1443528508.417 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T12:08:28.419Z,1443528508.419 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T12:08:29.017Z,1443528509.017 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T12:08:29.018Z,1443528509.018 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T12:08:29.253Z,1443528509.253 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T12:08:29.254Z,1443528509.254 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T12:08:29.369Z,1443528509.369 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T12:08:29.369Z,1443528509.369 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T12:08:29.905Z,1443528509.905 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T12:08:29.906Z,1443528509.906 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T12:08:30.032Z,1443528510.032 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T12:08:30.034Z,1443528510.034 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T12:08:30.034Z,1443528510.034 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T12:08:30.039Z,1443528510.039 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T12:08:30.117Z,1443528510.117 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T12:08:30.260Z,1443528510.260 [VerticalControl] Loaded
2015-09-29T12:08:30.260Z,1443528510.260 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T12:08:30.261Z,1443528510.261 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T12:08:30.339Z,1443528510.339 [HorizontalControl] Loaded
2015-09-29T12:08:30.344Z,1443528510.344 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T12:08:30.345Z,1443528510.345 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T12:08:30.351Z,1443528510.351 [SpeedControl] Loaded
2015-09-29T12:08:30.351Z,1443528510.351 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T12:08:30.352Z,1443528510.352 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T12:08:30.352Z,1443528510.352 [LoopControl] Loaded
2015-09-29T12:08:30.353Z,1443528510.353 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T12:08:30.353Z,1443528510.353 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T12:08:30.354Z,1443528510.354 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T12:08:30.521Z,1443528510.521 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T12:08:30.537Z,1443528510.537 [SBIT] Loaded
2015-09-29T12:08:30.538Z,1443528510.538 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T12:08:30.539Z,1443528510.539 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T12:08:30.569Z,1443528510.569 [IBIT] Loaded
2015-09-29T12:08:30.569Z,1443528510.569 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T12:08:30.571Z,1443528510.571 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T12:08:30.730Z,1443528510.730 [CBIT] Loaded
2015-09-29T12:08:30.730Z,1443528510.730 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T12:08:30.731Z,1443528510.731 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T12:08:30.732Z,1443528510.732 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T12:08:30.773Z,1443528510.773 [DepthRateCalculator] Loaded
2015-09-29T12:08:30.774Z,1443528510.774 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T12:08:30.779Z,1443528510.779 [PitchRateCalculator] Loaded
2015-09-29T12:08:30.780Z,1443528510.780 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T12:08:30.791Z,1443528510.791 [SpeedCalculator] Loaded
2015-09-29T12:08:30.796Z,1443528510.796 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T12:08:30.814Z,1443528510.814 [TempGradientCalculator] Loaded
2015-09-29T12:08:30.814Z,1443528510.814 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T12:08:30.832Z,1443528510.832 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T12:08:30.832Z,1443528510.832 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T12:08:30.841Z,1443528510.841 [YawRateCalculator] Loaded
2015-09-29T12:08:30.842Z,1443528510.842 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T12:08:30.842Z,1443528510.842 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T12:08:30.843Z,1443528510.843 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T12:08:30.967Z,1443528510.967 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T12:08:30.967Z,1443528510.967 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T12:08:30.967Z,1443528510.967 [StratificationFrontDetector] Loaded
2015-09-29T12:08:30.967Z,1443528510.967 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T12:08:30.968Z,1443528510.968 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T12:08:30.969Z,1443528510.969 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T12:08:31.274Z,1443528511.274 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T12:08:31.275Z,1443528511.275 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T12:08:31.410Z,1443528511.410 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T12:08:31.411Z,1443528511.411 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T12:08:31.473Z,1443528511.473 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T12:08:31.473Z,1443528511.473 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T12:08:31.491Z,1443528511.491 [NavChart] Loaded
2015-09-29T12:08:31.491Z,1443528511.491 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T12:08:31.501Z,1443528511.501 [UniversalFixResidualReporter] Loaded
2015-09-29T12:08:31.501Z,1443528511.501 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T12:08:31.502Z,1443528511.502 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T12:08:31.502Z,1443528511.502 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T12:08:31.511Z,1443528511.511 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T12:08:31.511Z,1443528511.511 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T12:08:31.815Z,1443528511.815 [CTD_NeilBrown] Loaded
2015-09-29T12:08:31.815Z,1443528511.815 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T12:08:31.824Z,1443528511.824 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T12:08:31.824Z,1443528511.824 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T12:08:31.837Z,1443528511.837 [ISUS] Loaded
2015-09-29T12:08:31.838Z,1443528511.838 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T12:08:31.857Z,1443528511.857 [PAR_Licor] Loaded
2015-09-29T12:08:31.857Z,1443528511.857 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T12:08:31.914Z,1443528511.914 [WetLabsBB2FL] Loaded
2015-09-29T12:08:31.915Z,1443528511.915 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T12:08:31.916Z,1443528511.916 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T12:08:31.916Z,1443528511.916 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T12:08:31.917Z,1443528511.917 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T12:08:31.918Z,1443528511.918 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T12:08:32.597Z,1443528512.597 [AHRS_sp3003D] Loaded
2015-09-29T12:08:32.598Z,1443528512.598 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T12:08:32.767Z,1443528512.767 [DataOverHttps] Loaded
2015-09-29T12:08:32.767Z,1443528512.767 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T12:08:32.781Z,1443528512.781 [Depth_Keller] Loaded
2015-09-29T12:08:32.781Z,1443528512.781 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T12:08:32.786Z,1443528512.786 [DropWeight] Loaded
2015-09-29T12:08:32.787Z,1443528512.787 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T12:08:32.929Z,1443528512.929 [DVL_micro] Loaded
2015-09-29T12:08:32.930Z,1443528512.930 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T12:08:33.028Z,1443528513.028 [NAL9602] Loaded
2015-09-29T12:08:33.028Z,1443528513.028 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T12:08:33.073Z,1443528513.073 [Onboard] Loaded
2015-09-29T12:08:33.073Z,1443528513.073 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T12:08:33.085Z,1443528513.085 [Radio_Surface] Loaded
2015-09-29T12:08:33.085Z,1443528513.085 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T12:08:33.086Z,1443528513.086 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T12:08:33.087Z,1443528513.087 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T12:08:33.234Z,1443528513.234 [DAT] Loaded
2015-09-29T12:08:33.234Z,1443528513.234 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T12:08:33.241Z,1443528513.241 [SCPI] Loaded
2015-09-29T12:08:33.241Z,1443528513.241 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T12:08:33.242Z,1443528513.242 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T12:08:33.243Z,1443528513.243 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T12:08:33.368Z,1443528513.368 [BuoyancyServo] Loaded
2015-09-29T12:08:33.368Z,1443528513.368 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T12:08:33.381Z,1443528513.381 [ElevatorServo] Loaded
2015-09-29T12:08:33.381Z,1443528513.381 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T12:08:33.393Z,1443528513.393 [MassServo] Loaded
2015-09-29T12:08:33.394Z,1443528513.394 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T12:08:33.406Z,1443528513.406 [RudderServo] Loaded
2015-09-29T12:08:33.406Z,1443528513.406 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T12:08:33.418Z,1443528513.418 [ThrusterServo] Loaded
2015-09-29T12:08:33.418Z,1443528513.418 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T12:08:33.418Z,1443528513.418 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T12:08:33.419Z,1443528513.419 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T12:08:33.607Z,1443528513.607 [InternalSim] Loaded
2015-09-29T12:08:33.607Z,1443528513.607 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T12:08:33.607Z,1443528513.607 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T12:08:33.608Z,1443528513.608 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T12:08:33.648Z,1443528513.648 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T12:08:33.652Z,1443528513.652 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T12:08:33.653Z,1443528513.653 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T12:08:33.660Z,1443528513.660 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T12:08:33.661Z,1443528513.661 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T12:08:33.661Z,1443528513.661 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T12:08:33.666Z,1443528513.666 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T12:08:33.666Z,1443528513.666 [Supervisor](DEBUG): Running supervisor.
2015-09-29T12:08:33.667Z,1443528513.667 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T12:08:33.670Z,1443528513.670 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T12:08:33.670Z,1443528513.670 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T12:08:33.671Z,1443528513.671 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T12:08:33.673Z,1443528513.673 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T12:08:33.674Z,1443528513.674 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T12:08:33.674Z,1443528513.674 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T12:08:33.674Z,1443528513.674 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T12:08:33.675Z,1443528513.675 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T12:08:33.676Z,1443528513.676 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T12:08:33.677Z,1443528513.677 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T12:08:33.678Z,1443528513.678 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T12:08:33.678Z,1443528513.678 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T12:08:33.679Z,1443528513.679 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T12:08:33.679Z,1443528513.679 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T12:08:33.679Z,1443528513.679 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T12:08:33.680Z,1443528513.680 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T12:08:33.680Z,1443528513.680 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T12:08:33.681Z,1443528513.681 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T12:08:33.681Z,1443528513.681 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T12:08:33.682Z,1443528513.682 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T12:08:33.682Z,1443528513.682 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T12:08:33.683Z,1443528513.683 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T12:08:33.684Z,1443528513.684 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T12:08:33.684Z,1443528513.684 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T12:08:33.684Z,1443528513.684 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T12:08:33.685Z,1443528513.685 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T12:08:33.685Z,1443528513.685 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T12:08:33.686Z,1443528513.686 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T12:08:33.686Z,1443528513.686 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T12:08:33.691Z,1443528513.691 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T12:08:33.708Z,1443528513.708 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T12:08:33.748Z,1443528513.748 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T12:08:33.762Z,1443528513.762 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T12:08:33.855Z,1443528513.855 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T12:08:33.915Z,1443528513.915 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T12:08:33.923Z,1443528513.923 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T12:08:33.925Z,1443528513.925 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T12:08:33.927Z,1443528513.927 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T12:08:33.927Z,1443528513.927 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T12:08:33.927Z,1443528513.927 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T12:08:33.927Z,1443528513.927 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T12:08:33.927Z,1443528513.927 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T12:08:33.928Z,1443528513.928 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T12:08:33.928Z,1443528513.928 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T12:08:33.929Z,1443528513.929 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T12:08:33.980Z,1443528513.980 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T12:08:34.007Z,1443528514.007 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T12:08:34.007Z,1443528514.007 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T12:08:34.061Z,1443528514.061 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T12:08:34.062Z,1443528514.062 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T12:08:34.108Z,1443528514.108 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T12:08:34.111Z,1443528514.111 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T12:08:34.133Z,1443528514.133 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T12:08:34.136Z,1443528514.136 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T12:08:34.145Z,1443528514.145 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T12:08:34.383Z,1443528514.383 [DVL_micro](INFO): Initializing
2015-09-29T12:08:34.541Z,1443528514.541 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:08:34.569Z,1443528514.569 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:08:34.689Z,1443528514.689 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T12:08:34.708Z,1443528514.708 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T12:08:34.714Z,1443528514.714 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T12:08:34.732Z,1443528514.732 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T12:08:34.737Z,1443528514.737 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T12:08:34.998Z,1443528514.998 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:08:34.999Z,1443528514.999 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T12:08:43.800Z,1443528523.800 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:44.124Z,1443528524.124 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:44.272Z,1443528524.272 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:44.671Z,1443528524.671 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T12:08:44.674Z,1443528524.674 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:45.069Z,1443528525.069 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:45.469Z,1443528525.469 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:45.869Z,1443528525.869 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:46.269Z,1443528526.269 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:46.669Z,1443528526.669 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:47.068Z,1443528527.068 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:47.468Z,1443528527.468 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:47.874Z,1443528527.874 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:48.275Z,1443528528.275 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:48.674Z,1443528528.674 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:49.068Z,1443528529.068 [NAL9602](INFO): No messages in MT queue
2015-09-29T12:08:49.069Z,1443528529.069 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:49.469Z,1443528529.469 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:49.869Z,1443528529.869 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:50.269Z,1443528530.269 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:50.669Z,1443528530.669 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:51.070Z,1443528531.070 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:51.469Z,1443528531.469 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:51.869Z,1443528531.869 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:52.268Z,1443528532.268 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:52.668Z,1443528532.668 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:53.069Z,1443528533.069 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:53.468Z,1443528533.468 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:53.868Z,1443528533.868 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:54.268Z,1443528534.268 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:54.300Z,1443528534.300 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T12:08:54.669Z,1443528534.669 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:55.068Z,1443528535.068 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:55.469Z,1443528535.469 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:55.868Z,1443528535.868 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:56.269Z,1443528536.269 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:56.669Z,1443528536.669 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:57.070Z,1443528537.070 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:57.469Z,1443528537.469 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:57.869Z,1443528537.869 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T12:08:58.269Z,1443528538.269 [D