2015-09-29T11:52:37.121Z,1443527557.121 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T11:52:37.124Z,1443527557.124 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T11:52:37.124Z,1443527557.124 [SyncHandler](INFO): Protected caller Thread ID is 762
2015-09-29T11:52:37.125Z,1443527557.125 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T11:52:37.130Z,1443527557.130 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T11:52:37.130Z,1443527557.130 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T11:52:37.133Z,1443527557.133 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T11:52:37.145Z,1443527557.145 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T11:52:37.150Z,1443527557.150 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T11:52:37.150Z,1443527557.150 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T11:52:37.151Z,1443527557.151 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T11:52:37.154Z,1443527557.154 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T11:52:37.154Z,1443527557.154 [logger ThreadHandler](INFO): Protected caller Thread ID is 765
2015-09-29T11:52:37.156Z,1443527557.156 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T11:52:37.156Z,1443527557.156 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T11:52:37.160Z,1443527557.160 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T11:52:37.541Z,1443527557.541 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T11:52:37.543Z,1443527557.543 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T11:52:37.734Z,1443527557.734 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T11:52:37.736Z,1443527557.736 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T11:52:37.878Z,1443527557.878 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T11:52:37.879Z,1443527557.879 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T11:52:38.026Z,1443527558.026 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T11:52:38.027Z,1443527558.027 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T11:52:38.122Z,1443527558.122 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T11:52:38.342Z,1443527558.342 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T11:52:38.343Z,1443527558.343 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T11:52:38.438Z,1443527558.438 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T11:52:38.439Z,1443527558.439 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T11:52:38.751Z,1443527558.751 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T11:52:38.751Z,1443527558.751 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T11:52:39.147Z,1443527559.147 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T11:52:39.147Z,1443527559.147 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T11:52:39.499Z,1443527559.499 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T11:52:39.500Z,1443527559.500 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T11:52:40.095Z,1443527560.095 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T11:52:40.096Z,1443527560.096 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T11:52:40.325Z,1443527560.325 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T11:52:40.326Z,1443527560.326 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T11:52:40.443Z,1443527560.443 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T11:52:40.444Z,1443527560.444 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T11:52:40.958Z,1443527560.958 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T11:52:40.959Z,1443527560.959 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T11:52:41.149Z,1443527561.149 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T11:52:41.151Z,1443527561.151 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T11:52:41.151Z,1443527561.151 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T11:52:41.156Z,1443527561.156 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T11:52:41.230Z,1443527561.230 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T11:52:41.363Z,1443527561.363 [VerticalControl] Loaded
2015-09-29T11:52:41.364Z,1443527561.364 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T11:52:41.364Z,1443527561.364 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T11:52:41.445Z,1443527561.445 [HorizontalControl] Loaded
2015-09-29T11:52:41.445Z,1443527561.445 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T11:52:41.446Z,1443527561.446 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T11:52:41.452Z,1443527561.452 [SpeedControl] Loaded
2015-09-29T11:52:41.452Z,1443527561.452 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T11:52:41.453Z,1443527561.453 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T11:52:41.453Z,1443527561.453 [LoopControl] Loaded
2015-09-29T11:52:41.454Z,1443527561.454 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T11:52:41.454Z,1443527561.454 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T11:52:41.455Z,1443527561.455 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T11:52:41.616Z,1443527561.616 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T11:52:41.628Z,1443527561.628 [SBIT] Loaded
2015-09-29T11:52:41.628Z,1443527561.628 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T11:52:41.629Z,1443527561.629 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T11:52:41.663Z,1443527561.663 [IBIT] Loaded
2015-09-29T11:52:41.663Z,1443527561.663 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T11:52:41.665Z,1443527561.665 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T11:52:41.819Z,1443527561.819 [CBIT] Loaded
2015-09-29T11:52:41.820Z,1443527561.820 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T11:52:41.820Z,1443527561.820 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T11:52:41.821Z,1443527561.821 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T11:52:41.858Z,1443527561.858 [DepthRateCalculator] Loaded
2015-09-29T11:52:41.858Z,1443527561.858 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T11:52:41.868Z,1443527561.868 [PitchRateCalculator] Loaded
2015-09-29T11:52:41.868Z,1443527561.868 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T11:52:41.879Z,1443527561.879 [SpeedCalculator] Loaded
2015-09-29T11:52:41.880Z,1443527561.880 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T11:52:41.901Z,1443527561.901 [TempGradientCalculator] Loaded
2015-09-29T11:52:41.901Z,1443527561.901 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T11:52:41.918Z,1443527561.918 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T11:52:41.919Z,1443527561.919 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T11:52:41.924Z,1443527561.924 [YawRateCalculator] Loaded
2015-09-29T11:52:41.924Z,1443527561.924 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T11:52:41.925Z,1443527561.925 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T11:52:41.925Z,1443527561.925 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T11:52:42.045Z,1443527562.045 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T11:52:42.045Z,1443527562.045 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T11:52:42.046Z,1443527562.046 [StratificationFrontDetector] Loaded
2015-09-29T11:52:42.046Z,1443527562.046 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T11:52:42.046Z,1443527562.046 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T11:52:42.047Z,1443527562.047 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T11:52:42.327Z,1443527562.327 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T11:52:42.328Z,1443527562.328 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T11:52:42.460Z,1443527562.460 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T11:52:42.460Z,1443527562.460 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T11:52:42.521Z,1443527562.521 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T11:52:42.521Z,1443527562.521 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T11:52:42.543Z,1443527562.543 [NavChart] Loaded
2015-09-29T11:52:42.543Z,1443527562.543 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T11:52:42.548Z,1443527562.548 [UniversalFixResidualReporter] Loaded
2015-09-29T11:52:42.548Z,1443527562.548 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T11:52:42.549Z,1443527562.549 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T11:52:42.550Z,1443527562.550 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T11:52:42.558Z,1443527562.558 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T11:52:42.559Z,1443527562.559 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T11:52:42.858Z,1443527562.858 [CTD_NeilBrown] Loaded
2015-09-29T11:52:42.859Z,1443527562.859 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T11:52:42.862Z,1443527562.862 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T11:52:42.862Z,1443527562.862 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T11:52:42.875Z,1443527562.875 [ISUS] Loaded
2015-09-29T11:52:42.875Z,1443527562.875 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T11:52:42.894Z,1443527562.894 [PAR_Licor] Loaded
2015-09-29T11:52:42.894Z,1443527562.894 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T11:52:42.949Z,1443527562.949 [WetLabsBB2FL] Loaded
2015-09-29T11:52:42.950Z,1443527562.950 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T11:52:42.954Z,1443527562.954 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T11:52:42.954Z,1443527562.954 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T11:52:42.954Z,1443527562.954 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T11:52:42.955Z,1443527562.955 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T11:52:43.684Z,1443527563.684 [AHRS_sp3003D] Loaded
2015-09-29T11:52:43.684Z,1443527563.684 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T11:52:43.879Z,1443527563.879 [DataOverHttps] Loaded
2015-09-29T11:52:43.879Z,1443527563.879 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T11:52:43.892Z,1443527563.892 [Depth_Keller] Loaded
2015-09-29T11:52:43.893Z,1443527563.893 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T11:52:43.898Z,1443527563.898 [DropWeight] Loaded
2015-09-29T11:52:43.898Z,1443527563.898 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T11:52:44.054Z,1443527564.054 [DVL_micro] Loaded
2015-09-29T11:52:44.054Z,1443527564.054 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T11:52:44.159Z,1443527564.159 [NAL9602] Loaded
2015-09-29T11:52:44.159Z,1443527564.159 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T11:52:44.209Z,1443527564.209 [Onboard] Loaded
2015-09-29T11:52:44.210Z,1443527564.210 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T11:52:44.221Z,1443527564.221 [Radio_Surface] Loaded
2015-09-29T11:52:44.222Z,1443527564.222 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T11:52:44.226Z,1443527564.226 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T11:52:44.226Z,1443527564.226 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T11:52:44.385Z,1443527564.385 [DAT] Loaded
2015-09-29T11:52:44.385Z,1443527564.385 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T11:52:44.392Z,1443527564.392 [SCPI] Loaded
2015-09-29T11:52:44.392Z,1443527564.392 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T11:52:44.393Z,1443527564.393 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T11:52:44.394Z,1443527564.394 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T11:52:44.523Z,1443527564.523 [BuoyancyServo] Loaded
2015-09-29T11:52:44.523Z,1443527564.523 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T11:52:44.540Z,1443527564.540 [ElevatorServo] Loaded
2015-09-29T11:52:44.540Z,1443527564.540 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T11:52:44.552Z,1443527564.552 [MassServo] Loaded
2015-09-29T11:52:44.552Z,1443527564.552 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T11:52:44.564Z,1443527564.564 [RudderServo] Loaded
2015-09-29T11:52:44.564Z,1443527564.564 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T11:52:44.580Z,1443527564.580 [ThrusterServo] Loaded
2015-09-29T11:52:44.580Z,1443527564.580 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T11:52:44.581Z,1443527564.581 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T11:52:44.581Z,1443527564.581 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T11:52:44.783Z,1443527564.783 [InternalSim] Loaded
2015-09-29T11:52:44.783Z,1443527564.783 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T11:52:44.784Z,1443527564.784 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T11:52:44.784Z,1443527564.784 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T11:52:44.823Z,1443527564.823 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T11:52:44.832Z,1443527564.832 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T11:52:44.832Z,1443527564.832 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T11:52:44.839Z,1443527564.839 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T11:52:44.842Z,1443527564.842 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T11:52:44.842Z,1443527564.842 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 814
2015-09-29T11:52:44.847Z,1443527564.847 [Supervisor](INFO): Main Thread ID is 761
2015-09-29T11:52:44.847Z,1443527564.847 [Supervisor](DEBUG): Running supervisor.
2015-09-29T11:52:44.848Z,1443527564.848 [CommandLine ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T11:52:44.854Z,1443527564.854 [controlThread ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T11:52:44.854Z,1443527564.854 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T11:52:44.855Z,1443527564.855 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T11:52:44.857Z,1443527564.857 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T11:52:44.858Z,1443527564.858 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T11:52:44.859Z,1443527564.859 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T11:52:44.859Z,1443527564.859 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T11:52:44.859Z,1443527564.859 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T11:52:44.861Z,1443527564.861 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T11:52:44.861Z,1443527564.861 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T11:52:44.862Z,1443527564.862 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T11:52:44.863Z,1443527564.863 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T11:52:44.864Z,1443527564.864 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T11:52:44.864Z,1443527564.864 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T11:52:44.864Z,1443527564.864 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T11:52:44.864Z,1443527564.864 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T11:52:44.865Z,1443527564.865 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T11:52:44.865Z,1443527564.865 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T11:52:44.865Z,1443527564.865 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T11:52:44.866Z,1443527564.866 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T11:52:44.866Z,1443527564.866 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T11:52:44.867Z,1443527564.867 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T11:52:44.868Z,1443527564.868 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T11:52:44.868Z,1443527564.868 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T11:52:44.868Z,1443527564.868 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T11:52:44.869Z,1443527564.869 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T11:52:44.869Z,1443527564.869 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T11:52:44.870Z,1443527564.870 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T11:52:44.870Z,1443527564.870 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T11:52:44.875Z,1443527564.875 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T11:52:44.911Z,1443527564.911 [logger ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T11:52:44.960Z,1443527564.960 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T11:52:44.966Z,1443527564.966 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T11:52:44.978Z,1443527564.978 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T11:52:45.046Z,1443527565.046 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T11:52:45.055Z,1443527565.055 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T11:52:45.057Z,1443527565.057 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T11:52:45.057Z,1443527565.057 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T11:52:45.058Z,1443527565.058 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T11:52:45.058Z,1443527565.058 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T11:52:45.058Z,1443527565.058 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T11:52:45.058Z,1443527565.058 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T11:52:45.059Z,1443527565.059 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T11:52:45.059Z,1443527565.059 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T11:52:45.091Z,1443527565.091 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T11:52:45.127Z,1443527565.127 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T11:52:45.168Z,1443527565.168 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T11:52:45.168Z,1443527565.168 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T11:52:45.241Z,1443527565.241 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T11:52:45.258Z,1443527565.258 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T11:52:45.285Z,1443527565.285 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T11:52:45.288Z,1443527565.288 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T11:52:45.339Z,1443527565.339 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T11:52:45.342Z,1443527565.342 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T11:52:45.352Z,1443527565.352 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T11:52:45.557Z,1443527565.557 [DVL_micro](INFO): Initializing
2015-09-29T11:52:45.723Z,1443527565.723 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:52:45.750Z,1443527565.750 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:52:45.863Z,1443527565.863 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T11:52:45.881Z,1443527565.881 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T11:52:45.906Z,1443527565.906 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T11:52:45.918Z,1443527565.918 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T11:52:45.930Z,1443527565.930 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T11:52:46.156Z,1443527566.156 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:52:46.157Z,1443527566.157 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:52:55.209Z,1443527575.209 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:55.563Z,1443527575.563 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:55.689Z,1443527575.689 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:56.089Z,1443527576.089 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T11:52:56.093Z,1443527576.093 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:56.489Z,1443527576.489 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:56.887Z,1443527576.887 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:57.287Z,1443527577.287 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:57.688Z,1443527577.688 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:58.086Z,1443527578.086 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:58.486Z,1443527578.486 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:58.898Z,1443527578.898 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:59.286Z,1443527579.286 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:52:59.692Z,1443527579.692 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:00.088Z,1443527580.088 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:00.486Z,1443527580.486 [NAL9602](INFO): No messages in MT queue
2015-09-29T11:53:00.487Z,1443527580.487 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:00.887Z,1443527580.887 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:01.287Z,1443527581.287 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:01.686Z,1443527581.686 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:02.086Z,1443527582.086 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:02.487Z,1443527582.487 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:02.886Z,1443527582.886 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:03.287Z,1443527583.287 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:03.687Z,1443527583.687 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:04.087Z,1443527584.087 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:04.486Z,1443527584.486 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:04.886Z,1443527584.886 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:05.286Z,1443527585.286 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:05.300Z,1443527585.300 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T11:53:05.686Z,1443527585.686 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:06.086Z,1443527586.086 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:06.488Z,1443527586.488 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:06.886Z,1443527586.886 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:07.286Z,1443527587.286 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:07.686Z,1443527587.686 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:08.086Z,1443527588.086 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:08.486Z,1443527588.486 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:08.887Z,1443527588.887 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:09.286Z,1443527589.286 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:53:09.686Z,1443527589.686 [D