2015-09-29T11:36:48.512Z,1443526608.512 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T11:36:48.515Z,1443526608.515 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T11:36:48.515Z,1443526608.515 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T11:36:48.516Z,1443526608.516 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T11:36:48.519Z,1443526608.519 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T11:36:48.519Z,1443526608.519 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T11:36:48.522Z,1443526608.522 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T11:36:48.535Z,1443526608.535 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T11:36:48.539Z,1443526608.539 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T11:36:48.539Z,1443526608.539 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T11:36:48.540Z,1443526608.540 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T11:36:48.543Z,1443526608.543 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T11:36:48.543Z,1443526608.543 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T11:36:48.545Z,1443526608.545 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T11:36:48.546Z,1443526608.546 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T11:36:48.550Z,1443526608.550 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T11:36:48.978Z,1443526608.978 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T11:36:48.979Z,1443526608.979 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T11:36:49.176Z,1443526609.176 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T11:36:49.177Z,1443526609.177 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T11:36:49.328Z,1443526609.328 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T11:36:49.329Z,1443526609.329 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T11:36:49.484Z,1443526609.484 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T11:36:49.484Z,1443526609.484 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T11:36:49.584Z,1443526609.584 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T11:36:49.816Z,1443526609.816 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T11:36:49.817Z,1443526609.817 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T11:36:49.915Z,1443526609.915 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T11:36:49.916Z,1443526609.916 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T11:36:50.246Z,1443526610.246 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T11:36:50.247Z,1443526610.247 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T11:36:50.672Z,1443526610.672 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T11:36:50.673Z,1443526610.673 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T11:36:51.046Z,1443526611.046 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T11:36:51.048Z,1443526611.048 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T11:36:51.685Z,1443526611.685 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T11:36:51.685Z,1443526611.685 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T11:36:51.939Z,1443526611.939 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T11:36:51.940Z,1443526611.940 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T11:36:52.088Z,1443526612.088 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T11:36:52.088Z,1443526612.088 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T11:36:52.636Z,1443526612.636 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T11:36:52.637Z,1443526612.637 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T11:36:52.766Z,1443526612.766 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T11:36:52.769Z,1443526612.769 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T11:36:52.769Z,1443526612.769 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T11:36:52.773Z,1443526612.773 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T11:36:52.849Z,1443526612.849 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T11:36:52.989Z,1443526612.989 [VerticalControl] Loaded
2015-09-29T11:36:52.989Z,1443526612.989 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T11:36:52.990Z,1443526612.990 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T11:36:53.079Z,1443526613.079 [HorizontalControl] Loaded
2015-09-29T11:36:53.079Z,1443526613.079 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T11:36:53.080Z,1443526613.080 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T11:36:53.086Z,1443526613.086 [SpeedControl] Loaded
2015-09-29T11:36:53.087Z,1443526613.087 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T11:36:53.087Z,1443526613.087 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T11:36:53.088Z,1443526613.088 [LoopControl] Loaded
2015-09-29T11:36:53.088Z,1443526613.088 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T11:36:53.089Z,1443526613.089 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T11:36:53.090Z,1443526613.090 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T11:36:53.254Z,1443526613.254 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T11:36:53.271Z,1443526613.271 [SBIT] Loaded
2015-09-29T11:36:53.271Z,1443526613.271 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T11:36:53.272Z,1443526613.272 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T11:36:53.307Z,1443526613.307 [IBIT] Loaded
2015-09-29T11:36:53.307Z,1443526613.307 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T11:36:53.310Z,1443526613.310 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T11:36:53.469Z,1443526613.469 [CBIT] Loaded
2015-09-29T11:36:53.470Z,1443526613.470 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T11:36:53.470Z,1443526613.470 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T11:36:53.471Z,1443526613.471 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T11:36:53.513Z,1443526613.513 [DepthRateCalculator] Loaded
2015-09-29T11:36:53.513Z,1443526613.513 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T11:36:53.519Z,1443526613.519 [PitchRateCalculator] Loaded
2015-09-29T11:36:53.519Z,1443526613.519 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T11:36:53.531Z,1443526613.531 [SpeedCalculator] Loaded
2015-09-29T11:36:53.531Z,1443526613.531 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T11:36:53.553Z,1443526613.553 [TempGradientCalculator] Loaded
2015-09-29T11:36:53.554Z,1443526613.554 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T11:36:53.572Z,1443526613.572 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T11:36:53.572Z,1443526613.572 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T11:36:53.578Z,1443526613.578 [YawRateCalculator] Loaded
2015-09-29T11:36:53.578Z,1443526613.578 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T11:36:53.578Z,1443526613.578 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T11:36:53.583Z,1443526613.583 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T11:36:53.697Z,1443526613.697 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T11:36:53.698Z,1443526613.698 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T11:36:53.698Z,1443526613.698 [StratificationFrontDetector] Loaded
2015-09-29T11:36:53.698Z,1443526613.698 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T11:36:53.699Z,1443526613.699 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T11:36:53.699Z,1443526613.699 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T11:36:53.972Z,1443526613.972 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T11:36:53.973Z,1443526613.973 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T11:36:54.097Z,1443526614.097 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T11:36:54.097Z,1443526614.097 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T11:36:54.155Z,1443526614.155 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T11:36:54.156Z,1443526614.156 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T11:36:54.174Z,1443526614.174 [NavChart] Loaded
2015-09-29T11:36:54.174Z,1443526614.174 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T11:36:54.180Z,1443526614.180 [UniversalFixResidualReporter] Loaded
2015-09-29T11:36:54.180Z,1443526614.180 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T11:36:54.181Z,1443526614.181 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T11:36:54.181Z,1443526614.181 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T11:36:54.190Z,1443526614.190 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T11:36:54.191Z,1443526614.191 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T11:36:54.478Z,1443526614.478 [CTD_NeilBrown] Loaded
2015-09-29T11:36:54.479Z,1443526614.479 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T11:36:54.480Z,1443526614.480 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T11:36:54.480Z,1443526614.480 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T11:36:54.494Z,1443526614.494 [ISUS] Loaded
2015-09-29T11:36:54.494Z,1443526614.494 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T11:36:54.509Z,1443526614.509 [PAR_Licor] Loaded
2015-09-29T11:36:54.509Z,1443526614.509 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T11:36:54.563Z,1443526614.563 [WetLabsBB2FL] Loaded
2015-09-29T11:36:54.563Z,1443526614.563 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T11:36:54.564Z,1443526614.564 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T11:36:54.565Z,1443526614.565 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T11:36:54.565Z,1443526614.565 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T11:36:54.566Z,1443526614.566 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T11:36:55.220Z,1443526615.220 [AHRS_sp3003D] Loaded
2015-09-29T11:36:55.220Z,1443526615.220 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T11:36:55.389Z,1443526615.389 [DataOverHttps] Loaded
2015-09-29T11:36:55.390Z,1443526615.390 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T11:36:55.404Z,1443526615.404 [Depth_Keller] Loaded
2015-09-29T11:36:55.404Z,1443526615.404 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T11:36:55.409Z,1443526615.409 [DropWeight] Loaded
2015-09-29T11:36:55.409Z,1443526615.409 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T11:36:55.553Z,1443526615.553 [DVL_micro] Loaded
2015-09-29T11:36:55.553Z,1443526615.553 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T11:36:55.652Z,1443526615.652 [NAL9602] Loaded
2015-09-29T11:36:55.653Z,1443526615.653 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T11:36:55.697Z,1443526615.697 [Onboard] Loaded
2015-09-29T11:36:55.697Z,1443526615.697 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T11:36:55.709Z,1443526615.709 [Radio_Surface] Loaded
2015-09-29T11:36:55.710Z,1443526615.710 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T11:36:55.711Z,1443526615.711 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T11:36:55.711Z,1443526615.711 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T11:36:55.859Z,1443526615.859 [DAT] Loaded
2015-09-29T11:36:55.859Z,1443526615.859 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T11:36:55.866Z,1443526615.866 [SCPI] Loaded
2015-09-29T11:36:55.866Z,1443526615.866 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T11:36:55.867Z,1443526615.867 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T11:36:55.868Z,1443526615.868 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T11:36:55.993Z,1443526615.993 [BuoyancyServo] Loaded
2015-09-29T11:36:55.993Z,1443526615.993 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T11:36:56.007Z,1443526616.007 [ElevatorServo] Loaded
2015-09-29T11:36:56.007Z,1443526616.007 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T11:36:56.019Z,1443526616.019 [MassServo] Loaded
2015-09-29T11:36:56.019Z,1443526616.019 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T11:36:56.032Z,1443526616.032 [RudderServo] Loaded
2015-09-29T11:36:56.032Z,1443526616.032 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T11:36:56.044Z,1443526616.044 [ThrusterServo] Loaded
2015-09-29T11:36:56.044Z,1443526616.044 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T11:36:56.045Z,1443526616.045 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T11:36:56.045Z,1443526616.045 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T11:36:56.233Z,1443526616.233 [InternalSim] Loaded
2015-09-29T11:36:56.234Z,1443526616.234 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T11:36:56.234Z,1443526616.234 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T11:36:56.235Z,1443526616.235 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T11:36:56.275Z,1443526616.275 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T11:36:56.279Z,1443526616.279 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T11:36:56.280Z,1443526616.280 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T11:36:56.287Z,1443526616.287 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T11:36:56.288Z,1443526616.288 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T11:36:56.288Z,1443526616.288 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T11:36:56.293Z,1443526616.293 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T11:36:56.294Z,1443526616.294 [Supervisor](DEBUG): Running supervisor.
2015-09-29T11:36:56.294Z,1443526616.294 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T11:36:56.297Z,1443526616.297 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T11:36:56.298Z,1443526616.298 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T11:36:56.298Z,1443526616.298 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T11:36:56.300Z,1443526616.300 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T11:36:56.301Z,1443526616.301 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T11:36:56.302Z,1443526616.302 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T11:36:56.302Z,1443526616.302 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T11:36:56.303Z,1443526616.303 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T11:36:56.304Z,1443526616.304 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T11:36:56.304Z,1443526616.304 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T11:36:56.305Z,1443526616.305 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T11:36:56.306Z,1443526616.306 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T11:36:56.307Z,1443526616.307 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T11:36:56.307Z,1443526616.307 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T11:36:56.307Z,1443526616.307 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T11:36:56.307Z,1443526616.307 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T11:36:56.308Z,1443526616.308 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T11:36:56.308Z,1443526616.308 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T11:36:56.308Z,1443526616.308 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T11:36:56.309Z,1443526616.309 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T11:36:56.310Z,1443526616.310 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T11:36:56.310Z,1443526616.310 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T11:36:56.311Z,1443526616.311 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T11:36:56.311Z,1443526616.311 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T11:36:56.312Z,1443526616.312 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T11:36:56.312Z,1443526616.312 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T11:36:56.312Z,1443526616.312 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T11:36:56.313Z,1443526616.313 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T11:36:56.313Z,1443526616.313 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T11:36:56.319Z,1443526616.319 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T11:36:56.331Z,1443526616.331 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T11:36:56.371Z,1443526616.371 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T11:36:56.385Z,1443526616.385 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T11:36:56.403Z,1443526616.403 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T11:36:56.496Z,1443526616.496 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T11:36:56.531Z,1443526616.531 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T11:36:56.533Z,1443526616.533 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T11:36:56.534Z,1443526616.534 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T11:36:56.534Z,1443526616.534 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T11:36:56.534Z,1443526616.534 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T11:36:56.534Z,1443526616.534 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T11:36:56.535Z,1443526616.535 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T11:36:56.535Z,1443526616.535 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T11:36:56.535Z,1443526616.535 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T11:36:56.568Z,1443526616.568 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T11:36:56.617Z,1443526616.617 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T11:36:56.640Z,1443526616.640 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T11:36:56.641Z,1443526616.641 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T11:36:56.710Z,1443526616.710 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T11:36:56.728Z,1443526616.728 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T11:36:56.754Z,1443526616.754 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T11:36:56.757Z,1443526616.757 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T11:36:56.779Z,1443526616.779 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T11:36:56.782Z,1443526616.782 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T11:36:56.796Z,1443526616.796 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T11:36:57.010Z,1443526617.010 [DVL_micro](INFO): Initializing
2015-09-29T11:36:57.192Z,1443526617.192 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:36:57.216Z,1443526617.216 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:36:57.334Z,1443526617.334 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T11:36:57.356Z,1443526617.356 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T11:36:57.362Z,1443526617.362 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T11:36:57.383Z,1443526617.383 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T11:36:57.404Z,1443526617.404 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T11:36:57.646Z,1443526617.646 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:36:57.647Z,1443526617.647 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:37:06.487Z,1443526626.487 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:06.822Z,1443526626.822 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:06.958Z,1443526626.958 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:07.350Z,1443526627.350 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003200
2015-09-29T11:37:07.353Z,1443526627.353 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:07.748Z,1443526627.748 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:08.148Z,1443526628.148 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:08.548Z,1443526628.548 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:08.948Z,1443526628.948 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:09.348Z,1443526629.348 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:09.748Z,1443526629.748 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:10.147Z,1443526630.147 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:10.557Z,1443526630.557 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:10.958Z,1443526630.958 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:11.358Z,1443526631.358 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:11.757Z,1443526631.757 [NAL9602](INFO): No messages in MT queue
2015-09-29T11:37:11.758Z,1443526631.758 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:12.158Z,1443526632.158 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:12.557Z,1443526632.557 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:12.957Z,1443526632.957 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:13.357Z,1443526633.357 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:13.758Z,1443526633.758 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:14.155Z,1443526634.155 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:14.547Z,1443526634.547 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:14.957Z,1443526634.957 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:15.348Z,1443526635.348 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:15.747Z,1443526635.747 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:16.157Z,1443526636.157 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:16.557Z,1443526636.557 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:16.948Z,1443526636.948 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:16.984Z,1443526636.984 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T11:37:17.348Z,1443526637.348 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:17.748Z,1443526637.748 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:18.148Z,1443526638.148 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:18.548Z,1443526638.548 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:18.948Z,1443526638.948 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:19.348Z,1443526639.348 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:19.749Z,1443526639.749 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:20.148Z,1443526640.148 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:20.548Z,1443526640.548 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:37:20.948Z,1443526640.948 [D