2015-09-29T11:20:59.796Z,1443525659.796 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T11:20:59.799Z,1443525659.799 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T11:20:59.799Z,1443525659.799 [SyncHandler](INFO): Protected caller Thread ID is 762
2015-09-29T11:20:59.800Z,1443525659.800 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T11:20:59.802Z,1443525659.802 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T11:20:59.803Z,1443525659.803 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T11:20:59.806Z,1443525659.806 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T11:20:59.818Z,1443525659.818 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T11:20:59.822Z,1443525659.822 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T11:20:59.823Z,1443525659.823 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T11:20:59.824Z,1443525659.824 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T11:20:59.826Z,1443525659.826 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T11:20:59.827Z,1443525659.827 [logger ThreadHandler](INFO): Protected caller Thread ID is 765
2015-09-29T11:20:59.829Z,1443525659.829 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T11:20:59.829Z,1443525659.829 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T11:20:59.833Z,1443525659.833 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T11:21:00.214Z,1443525660.214 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T11:21:00.216Z,1443525660.216 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T11:21:00.403Z,1443525660.403 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T11:21:00.405Z,1443525660.405 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T11:21:00.551Z,1443525660.551 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T11:21:00.552Z,1443525660.552 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T11:21:00.699Z,1443525660.699 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T11:21:00.700Z,1443525660.700 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T11:21:00.794Z,1443525660.794 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T11:21:01.011Z,1443525661.011 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T11:21:01.012Z,1443525661.012 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T11:21:01.107Z,1443525661.107 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T11:21:01.108Z,1443525661.108 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T11:21:01.420Z,1443525661.420 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T11:21:01.421Z,1443525661.421 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T11:21:01.816Z,1443525661.816 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T11:21:01.816Z,1443525661.816 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T11:21:02.167Z,1443525662.167 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T11:21:02.169Z,1443525662.169 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T11:21:02.760Z,1443525662.760 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T11:21:02.761Z,1443525662.761 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T11:21:02.992Z,1443525662.992 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T11:21:02.992Z,1443525662.992 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T11:21:03.112Z,1443525663.112 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T11:21:03.112Z,1443525663.112 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T11:21:03.624Z,1443525663.624 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T11:21:03.624Z,1443525663.624 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T11:21:03.746Z,1443525663.746 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T11:21:03.748Z,1443525663.748 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T11:21:03.748Z,1443525663.748 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T11:21:03.753Z,1443525663.753 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T11:21:03.826Z,1443525663.826 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T11:21:03.959Z,1443525663.959 [VerticalControl] Loaded
2015-09-29T11:21:03.959Z,1443525663.959 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T11:21:03.960Z,1443525663.960 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T11:21:04.040Z,1443525664.040 [HorizontalControl] Loaded
2015-09-29T11:21:04.040Z,1443525664.040 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T11:21:04.041Z,1443525664.041 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T11:21:04.047Z,1443525664.047 [SpeedControl] Loaded
2015-09-29T11:21:04.047Z,1443525664.047 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T11:21:04.048Z,1443525664.048 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T11:21:04.048Z,1443525664.048 [LoopControl] Loaded
2015-09-29T11:21:04.049Z,1443525664.049 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T11:21:04.049Z,1443525664.049 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T11:21:04.050Z,1443525664.050 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T11:21:04.206Z,1443525664.206 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T11:21:04.218Z,1443525664.218 [SBIT] Loaded
2015-09-29T11:21:04.219Z,1443525664.219 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T11:21:04.219Z,1443525664.219 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T11:21:04.253Z,1443525664.253 [IBIT] Loaded
2015-09-29T11:21:04.253Z,1443525664.253 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T11:21:04.255Z,1443525664.255 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T11:21:04.409Z,1443525664.409 [CBIT] Loaded
2015-09-29T11:21:04.409Z,1443525664.409 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T11:21:04.409Z,1443525664.409 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T11:21:04.410Z,1443525664.410 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T11:21:04.451Z,1443525664.451 [DepthRateCalculator] Loaded
2015-09-29T11:21:04.451Z,1443525664.451 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T11:21:04.457Z,1443525664.457 [PitchRateCalculator] Loaded
2015-09-29T11:21:04.457Z,1443525664.457 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T11:21:04.468Z,1443525664.468 [SpeedCalculator] Loaded
2015-09-29T11:21:04.469Z,1443525664.469 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T11:21:04.490Z,1443525664.490 [TempGradientCalculator] Loaded
2015-09-29T11:21:04.490Z,1443525664.490 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T11:21:04.507Z,1443525664.507 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T11:21:04.507Z,1443525664.507 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T11:21:04.513Z,1443525664.513 [YawRateCalculator] Loaded
2015-09-29T11:21:04.513Z,1443525664.513 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T11:21:04.513Z,1443525664.513 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T11:21:04.514Z,1443525664.514 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T11:21:04.638Z,1443525664.638 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T11:21:04.639Z,1443525664.639 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T11:21:04.639Z,1443525664.639 [StratificationFrontDetector] Loaded
2015-09-29T11:21:04.639Z,1443525664.639 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T11:21:04.640Z,1443525664.640 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T11:21:04.640Z,1443525664.640 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T11:21:04.927Z,1443525664.927 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T11:21:04.928Z,1443525664.928 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T11:21:05.061Z,1443525665.061 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T11:21:05.061Z,1443525665.061 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T11:21:05.121Z,1443525665.121 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T11:21:05.121Z,1443525665.121 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T11:21:05.138Z,1443525665.138 [NavChart] Loaded
2015-09-29T11:21:05.139Z,1443525665.139 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T11:21:05.148Z,1443525665.148 [UniversalFixResidualReporter] Loaded
2015-09-29T11:21:05.148Z,1443525665.148 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T11:21:05.149Z,1443525665.149 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T11:21:05.149Z,1443525665.149 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T11:21:05.158Z,1443525665.158 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T11:21:05.163Z,1443525665.163 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T11:21:05.464Z,1443525665.464 [CTD_NeilBrown] Loaded
2015-09-29T11:21:05.464Z,1443525665.464 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T11:21:05.466Z,1443525665.466 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T11:21:05.467Z,1443525665.467 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T11:21:05.480Z,1443525665.480 [ISUS] Loaded
2015-09-29T11:21:05.480Z,1443525665.480 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T11:21:05.498Z,1443525665.498 [PAR_Licor] Loaded
2015-09-29T11:21:05.499Z,1443525665.499 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T11:21:05.554Z,1443525665.554 [WetLabsBB2FL] Loaded
2015-09-29T11:21:05.554Z,1443525665.554 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T11:21:05.558Z,1443525665.558 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T11:21:05.559Z,1443525665.559 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T11:21:05.559Z,1443525665.559 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T11:21:05.560Z,1443525665.560 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T11:21:06.285Z,1443525666.285 [AHRS_sp3003D] Loaded
2015-09-29T11:21:06.285Z,1443525666.285 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T11:21:06.480Z,1443525666.480 [DataOverHttps] Loaded
2015-09-29T11:21:06.480Z,1443525666.480 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T11:21:06.493Z,1443525666.493 [Depth_Keller] Loaded
2015-09-29T11:21:06.494Z,1443525666.494 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T11:21:06.503Z,1443525666.503 [DropWeight] Loaded
2015-09-29T11:21:06.503Z,1443525666.503 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T11:21:06.654Z,1443525666.654 [DVL_micro] Loaded
2015-09-29T11:21:06.654Z,1443525666.654 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T11:21:06.758Z,1443525666.758 [NAL9602] Loaded
2015-09-29T11:21:06.758Z,1443525666.758 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T11:21:06.808Z,1443525666.808 [Onboard] Loaded
2015-09-29T11:21:06.809Z,1443525666.809 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T11:21:06.820Z,1443525666.820 [Radio_Surface] Loaded
2015-09-29T11:21:06.821Z,1443525666.821 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T11:21:06.822Z,1443525666.822 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T11:21:06.823Z,1443525666.823 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T11:21:06.982Z,1443525666.982 [DAT] Loaded
2015-09-29T11:21:06.982Z,1443525666.982 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T11:21:06.989Z,1443525666.989 [SCPI] Loaded
2015-09-29T11:21:06.989Z,1443525666.989 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T11:21:06.990Z,1443525666.990 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T11:21:06.990Z,1443525666.990 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T11:21:07.120Z,1443525667.120 [BuoyancyServo] Loaded
2015-09-29T11:21:07.120Z,1443525667.120 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T11:21:07.133Z,1443525667.133 [ElevatorServo] Loaded
2015-09-29T11:21:07.133Z,1443525667.133 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T11:21:07.149Z,1443525667.149 [MassServo] Loaded
2015-09-29T11:21:07.149Z,1443525667.149 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T11:21:07.161Z,1443525667.161 [RudderServo] Loaded
2015-09-29T11:21:07.162Z,1443525667.162 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T11:21:07.173Z,1443525667.173 [ThrusterServo] Loaded
2015-09-29T11:21:07.173Z,1443525667.173 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T11:21:07.174Z,1443525667.174 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T11:21:07.174Z,1443525667.174 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T11:21:07.377Z,1443525667.377 [InternalSim] Loaded
2015-09-29T11:21:07.377Z,1443525667.377 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T11:21:07.378Z,1443525667.378 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T11:21:07.379Z,1443525667.379 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T11:21:07.422Z,1443525667.422 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T11:21:07.426Z,1443525667.426 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T11:21:07.427Z,1443525667.427 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T11:21:07.433Z,1443525667.433 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T11:21:07.438Z,1443525667.438 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T11:21:07.439Z,1443525667.439 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 814
2015-09-29T11:21:07.444Z,1443525667.444 [Supervisor](INFO): Main Thread ID is 761
2015-09-29T11:21:07.444Z,1443525667.444 [Supervisor](DEBUG): Running supervisor.
2015-09-29T11:21:07.444Z,1443525667.444 [CommandLine ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T11:21:07.451Z,1443525667.451 [controlThread ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T11:21:07.451Z,1443525667.451 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T11:21:07.452Z,1443525667.452 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T11:21:07.454Z,1443525667.454 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T11:21:07.455Z,1443525667.455 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T11:21:07.455Z,1443525667.455 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T11:21:07.456Z,1443525667.456 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T11:21:07.456Z,1443525667.456 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T11:21:07.458Z,1443525667.458 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T11:21:07.458Z,1443525667.458 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T11:21:07.459Z,1443525667.459 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T11:21:07.459Z,1443525667.459 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T11:21:07.460Z,1443525667.460 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T11:21:07.461Z,1443525667.461 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T11:21:07.461Z,1443525667.461 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T11:21:07.461Z,1443525667.461 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T11:21:07.461Z,1443525667.461 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T11:21:07.462Z,1443525667.462 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T11:21:07.462Z,1443525667.462 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T11:21:07.463Z,1443525667.463 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T11:21:07.463Z,1443525667.463 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T11:21:07.464Z,1443525667.464 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T11:21:07.464Z,1443525667.464 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T11:21:07.465Z,1443525667.465 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T11:21:07.465Z,1443525667.465 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T11:21:07.466Z,1443525667.466 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T11:21:07.466Z,1443525667.466 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T11:21:07.466Z,1443525667.466 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T11:21:07.467Z,1443525667.467 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T11:21:07.471Z,1443525667.471 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T11:21:07.507Z,1443525667.507 [logger ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T11:21:07.611Z,1443525667.611 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T11:21:07.671Z,1443525667.671 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T11:21:07.683Z,1443525667.683 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T11:21:07.700Z,1443525667.700 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T11:21:07.708Z,1443525667.708 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T11:21:07.717Z,1443525667.717 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T11:21:07.719Z,1443525667.719 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T11:21:07.719Z,1443525667.719 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T11:21:07.719Z,1443525667.719 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T11:21:07.720Z,1443525667.720 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T11:21:07.720Z,1443525667.720 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T11:21:07.720Z,1443525667.720 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T11:21:07.720Z,1443525667.720 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T11:21:07.721Z,1443525667.721 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T11:21:07.846Z,1443525667.846 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T11:21:07.881Z,1443525667.881 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T11:21:07.882Z,1443525667.882 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T11:21:07.952Z,1443525667.952 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T11:21:07.953Z,1443525667.953 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T11:21:07.997Z,1443525667.997 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T11:21:07.999Z,1443525667.999 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T11:21:08.021Z,1443525668.021 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T11:21:08.032Z,1443525668.032 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T11:21:08.052Z,1443525668.052 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T11:21:08.268Z,1443525668.268 [DVL_micro](INFO): Initializing
2015-09-29T11:21:08.427Z,1443525668.427 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:21:08.442Z,1443525668.442 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:21:08.567Z,1443525668.567 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T11:21:08.579Z,1443525668.579 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T11:21:08.591Z,1443525668.591 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T11:21:08.607Z,1443525668.607 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T11:21:08.620Z,1443525668.620 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T11:21:08.900Z,1443525668.900 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:21:08.901Z,1443525668.901 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T11:21:18.008Z,1443525678.008 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:18.322Z,1443525678.322 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:18.461Z,1443525678.461 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:18.862Z,1443525678.862 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T11:21:18.865Z,1443525678.865 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:19.260Z,1443525679.260 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:19.660Z,1443525679.660 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:20.061Z,1443525680.061 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:20.459Z,1443525680.459 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:20.859Z,1443525680.859 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:21.259Z,1443525681.259 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:21.658Z,1443525681.658 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:22.069Z,1443525682.069 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:22.462Z,1443525682.462 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:22.864Z,1443525682.864 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:23.263Z,1443525683.263 [NAL9602](INFO): No messages in MT queue
2015-09-29T11:21:23.264Z,1443525683.264 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:23.662Z,1443525683.662 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:24.065Z,1443525684.065 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:24.464Z,1443525684.464 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:24.861Z,1443525684.861 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:25.264Z,1443525685.264 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:25.662Z,1443525685.662 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:26.063Z,1443525686.063 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:26.461Z,1443525686.461 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:26.864Z,1443525686.864 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:27.265Z,1443525687.265 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:27.661Z,1443525687.661 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:28.061Z,1443525688.061 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:28.076Z,1443525688.076 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T11:21:28.465Z,1443525688.465 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:28.864Z,1443525688.864 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:29.262Z,1443525689.262 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:29.661Z,1443525689.661 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:30.062Z,1443525690.062 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:30.465Z,1443525690.465 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:30.866Z,1443525690.866 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:31.262Z,1443525691.262 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:31.664Z,1443525691.664 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:32.064Z,1443525692.064 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T11:21:32.463Z,1443525692.463 [D