2015-09-29T10:41:28.506Z,1443523288.506 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T10:41:28.509Z,1443523288.509 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T10:41:28.510Z,1443523288.510 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T10:41:28.510Z,1443523288.510 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T10:41:28.513Z,1443523288.513 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T10:41:28.513Z,1443523288.513 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T10:41:28.516Z,1443523288.516 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T10:41:28.529Z,1443523288.529 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T10:41:28.533Z,1443523288.533 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T10:41:28.533Z,1443523288.533 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T10:41:28.534Z,1443523288.534 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T10:41:28.537Z,1443523288.537 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T10:41:28.537Z,1443523288.537 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T10:41:28.539Z,1443523288.539 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T10:41:28.540Z,1443523288.540 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T10:41:28.544Z,1443523288.544 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T10:41:28.967Z,1443523288.967 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T10:41:28.969Z,1443523288.969 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T10:41:29.173Z,1443523289.173 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T10:41:29.175Z,1443523289.175 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T10:41:29.325Z,1443523289.325 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T10:41:29.326Z,1443523289.326 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T10:41:29.477Z,1443523289.477 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T10:41:29.478Z,1443523289.478 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T10:41:29.578Z,1443523289.578 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T10:41:29.810Z,1443523289.810 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T10:41:29.810Z,1443523289.810 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T10:41:29.909Z,1443523289.909 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T10:41:29.910Z,1443523289.910 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T10:41:30.246Z,1443523290.246 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T10:41:30.246Z,1443523290.246 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T10:41:30.664Z,1443523290.664 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T10:41:30.665Z,1443523290.665 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T10:41:31.042Z,1443523291.042 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T10:41:31.044Z,1443523291.044 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T10:41:31.676Z,1443523291.676 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T10:41:31.677Z,1443523291.677 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T10:41:31.924Z,1443523291.924 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T10:41:31.925Z,1443523291.925 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T10:41:32.048Z,1443523292.048 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T10:41:32.049Z,1443523292.049 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T10:41:32.610Z,1443523292.610 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T10:41:32.611Z,1443523292.611 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T10:41:32.740Z,1443523292.740 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T10:41:32.742Z,1443523292.742 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T10:41:32.743Z,1443523292.743 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T10:41:32.747Z,1443523292.747 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T10:41:32.823Z,1443523292.823 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T10:41:32.963Z,1443523292.963 [VerticalControl] Loaded
2015-09-29T10:41:32.963Z,1443523292.963 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T10:41:32.964Z,1443523292.964 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T10:41:33.048Z,1443523293.048 [HorizontalControl] Loaded
2015-09-29T10:41:33.048Z,1443523293.048 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T10:41:33.053Z,1443523293.053 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T10:41:33.059Z,1443523293.059 [SpeedControl] Loaded
2015-09-29T10:41:33.059Z,1443523293.059 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T10:41:33.060Z,1443523293.060 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T10:41:33.060Z,1443523293.060 [LoopControl] Loaded
2015-09-29T10:41:33.061Z,1443523293.061 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T10:41:33.061Z,1443523293.061 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T10:41:33.062Z,1443523293.062 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T10:41:33.226Z,1443523293.226 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T10:41:33.243Z,1443523293.243 [SBIT] Loaded
2015-09-29T10:41:33.243Z,1443523293.243 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T10:41:33.244Z,1443523293.244 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T10:41:33.279Z,1443523293.279 [IBIT] Loaded
2015-09-29T10:41:33.279Z,1443523293.279 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T10:41:33.282Z,1443523293.282 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T10:41:33.437Z,1443523293.437 [CBIT] Loaded
2015-09-29T10:41:33.437Z,1443523293.437 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T10:41:33.437Z,1443523293.437 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T10:41:33.438Z,1443523293.438 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T10:41:33.480Z,1443523293.480 [DepthRateCalculator] Loaded
2015-09-29T10:41:33.480Z,1443523293.480 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T10:41:33.486Z,1443523293.486 [PitchRateCalculator] Loaded
2015-09-29T10:41:33.486Z,1443523293.486 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T10:41:33.502Z,1443523293.502 [SpeedCalculator] Loaded
2015-09-29T10:41:33.503Z,1443523293.503 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T10:41:33.521Z,1443523293.521 [TempGradientCalculator] Loaded
2015-09-29T10:41:33.521Z,1443523293.521 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T10:41:33.543Z,1443523293.543 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T10:41:33.543Z,1443523293.543 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T10:41:33.549Z,1443523293.549 [YawRateCalculator] Loaded
2015-09-29T10:41:33.549Z,1443523293.549 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T10:41:33.550Z,1443523293.550 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T10:41:33.550Z,1443523293.550 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T10:41:33.677Z,1443523293.677 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T10:41:33.677Z,1443523293.677 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T10:41:33.677Z,1443523293.677 [StratificationFrontDetector] Loaded
2015-09-29T10:41:33.677Z,1443523293.677 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T10:41:33.678Z,1443523293.678 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T10:41:33.679Z,1443523293.679 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T10:41:33.982Z,1443523293.982 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T10:41:33.983Z,1443523293.983 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T10:41:34.118Z,1443523294.118 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T10:41:34.118Z,1443523294.118 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T10:41:34.181Z,1443523294.181 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T10:41:34.181Z,1443523294.181 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T10:41:34.203Z,1443523294.203 [NavChart] Loaded
2015-09-29T10:41:34.204Z,1443523294.204 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T10:41:34.209Z,1443523294.209 [UniversalFixResidualReporter] Loaded
2015-09-29T10:41:34.209Z,1443523294.209 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T10:41:34.210Z,1443523294.210 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T10:41:34.211Z,1443523294.211 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T10:41:34.219Z,1443523294.219 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T10:41:34.220Z,1443523294.220 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T10:41:34.529Z,1443523294.529 [CTD_NeilBrown] Loaded
2015-09-29T10:41:34.529Z,1443523294.529 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T10:41:34.533Z,1443523294.533 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T10:41:34.533Z,1443523294.533 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T10:41:34.546Z,1443523294.546 [ISUS] Loaded
2015-09-29T10:41:34.547Z,1443523294.547 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T10:41:34.566Z,1443523294.566 [PAR_Licor] Loaded
2015-09-29T10:41:34.567Z,1443523294.567 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T10:41:34.624Z,1443523294.624 [WetLabsBB2FL] Loaded
2015-09-29T10:41:34.625Z,1443523294.625 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T10:41:34.629Z,1443523294.629 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T10:41:34.629Z,1443523294.629 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T10:41:34.630Z,1443523294.630 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T10:41:34.631Z,1443523294.631 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T10:41:35.361Z,1443523295.361 [AHRS_sp3003D] Loaded
2015-09-29T10:41:35.361Z,1443523295.361 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T10:41:35.559Z,1443523295.559 [DataOverHttps] Loaded
2015-09-29T10:41:35.559Z,1443523295.559 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T10:41:35.577Z,1443523295.577 [Depth_Keller] Loaded
2015-09-29T10:41:35.578Z,1443523295.578 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T10:41:35.583Z,1443523295.583 [DropWeight] Loaded
2015-09-29T10:41:35.583Z,1443523295.583 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T10:41:35.739Z,1443523295.739 [DVL_micro] Loaded
2015-09-29T10:41:35.740Z,1443523295.740 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T10:41:35.851Z,1443523295.851 [NAL9602] Loaded
2015-09-29T10:41:35.851Z,1443523295.851 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T10:41:35.904Z,1443523295.904 [Onboard] Loaded
2015-09-29T10:41:35.904Z,1443523295.904 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T10:41:35.916Z,1443523295.916 [Radio_Surface] Loaded
2015-09-29T10:41:35.916Z,1443523295.916 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T10:41:35.921Z,1443523295.921 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T10:41:35.921Z,1443523295.921 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T10:41:36.085Z,1443523296.085 [DAT] Loaded
2015-09-29T10:41:36.085Z,1443523296.085 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T10:41:36.092Z,1443523296.092 [SCPI] Loaded
2015-09-29T10:41:36.093Z,1443523296.093 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T10:41:36.093Z,1443523296.093 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T10:41:36.094Z,1443523296.094 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T10:41:36.231Z,1443523296.231 [BuoyancyServo] Loaded
2015-09-29T10:41:36.232Z,1443523296.232 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T10:41:36.245Z,1443523296.245 [ElevatorServo] Loaded
2015-09-29T10:41:36.246Z,1443523296.246 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T10:41:36.262Z,1443523296.262 [MassServo] Loaded
2015-09-29T10:41:36.262Z,1443523296.262 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T10:41:36.274Z,1443523296.274 [RudderServo] Loaded
2015-09-29T10:41:36.275Z,1443523296.275 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T10:41:36.286Z,1443523296.286 [ThrusterServo] Loaded
2015-09-29T10:41:36.287Z,1443523296.287 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T10:41:36.287Z,1443523296.287 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T10:41:36.288Z,1443523296.288 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T10:41:36.495Z,1443523296.495 [InternalSim] Loaded
2015-09-29T10:41:36.496Z,1443523296.496 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T10:41:36.496Z,1443523296.496 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T10:41:36.497Z,1443523296.497 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T10:41:36.541Z,1443523296.541 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T10:41:36.545Z,1443523296.545 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T10:41:36.546Z,1443523296.546 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T10:41:36.553Z,1443523296.553 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T10:41:36.557Z,1443523296.557 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T10:41:36.557Z,1443523296.557 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T10:41:36.562Z,1443523296.562 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T10:41:36.562Z,1443523296.562 [Supervisor](DEBUG): Running supervisor.
2015-09-29T10:41:36.563Z,1443523296.563 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T10:41:36.569Z,1443523296.569 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T10:41:36.570Z,1443523296.570 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T10:41:36.571Z,1443523296.571 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T10:41:36.572Z,1443523296.572 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T10:41:36.573Z,1443523296.573 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T10:41:36.574Z,1443523296.574 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T10:41:36.574Z,1443523296.574 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T10:41:36.575Z,1443523296.575 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T10:41:36.576Z,1443523296.576 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T10:41:36.576Z,1443523296.576 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T10:41:36.577Z,1443523296.577 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T10:41:36.578Z,1443523296.578 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T10:41:36.579Z,1443523296.579 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T10:41:36.579Z,1443523296.579 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T10:41:36.579Z,1443523296.579 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T10:41:36.579Z,1443523296.579 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T10:41:36.580Z,1443523296.580 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T10:41:36.580Z,1443523296.580 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T10:41:36.580Z,1443523296.580 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T10:41:36.581Z,1443523296.581 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T10:41:36.582Z,1443523296.582 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T10:41:36.582Z,1443523296.582 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T10:41:36.583Z,1443523296.583 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T10:41:36.583Z,1443523296.583 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T10:41:36.584Z,1443523296.584 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T10:41:36.584Z,1443523296.584 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T10:41:36.584Z,1443523296.584 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T10:41:36.585Z,1443523296.585 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T10:41:36.585Z,1443523296.585 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T10:41:36.590Z,1443523296.590 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T10:41:36.625Z,1443523296.625 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T10:41:36.713Z,1443523296.713 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T10:41:36.722Z,1443523296.722 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T10:41:36.787Z,1443523296.787 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T10:41:36.804Z,1443523296.804 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T10:41:36.843Z,1443523296.843 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T10:41:36.859Z,1443523296.859 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T10:41:36.889Z,1443523296.889 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T10:41:36.890Z,1443523296.890 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T10:41:36.890Z,1443523296.890 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T10:41:36.890Z,1443523296.890 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T10:41:36.890Z,1443523296.890 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T10:41:36.890Z,1443523296.890 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T10:41:36.891Z,1443523296.891 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T10:41:36.891Z,1443523296.891 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T10:41:36.961Z,1443523296.961 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T10:41:36.996Z,1443523296.996 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T10:41:37.013Z,1443523297.013 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T10:41:37.071Z,1443523297.071 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T10:41:37.085Z,1443523297.085 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T10:41:37.115Z,1443523297.115 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T10:41:37.134Z,1443523297.134 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T10:41:37.140Z,1443523297.140 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T10:41:37.155Z,1443523297.155 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T10:41:37.162Z,1443523297.162 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T10:41:37.440Z,1443523297.440 [DVL_micro](INFO): Initializing
2015-09-29T10:41:37.617Z,1443523297.617 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T10:41:37.629Z,1443523297.629 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T10:41:37.741Z,1443523297.741 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T10:41:37.748Z,1443523297.748 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T10:41:37.773Z,1443523297.773 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T10:41:37.785Z,1443523297.785 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T10:41:37.794Z,1443523297.794 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T10:41:38.031Z,1443523298.031 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T10:41:38.032Z,1443523298.032 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T10:41:47.092Z,1443523307.092 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:47.451Z,1443523307.451 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:47.600Z,1443523307.600 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:47.972Z,1443523307.972 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T10:41:47.976Z,1443523307.976 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:48.371Z,1443523308.371 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:48.770Z,1443523308.770 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:49.170Z,1443523309.170 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:49.570Z,1443523309.570 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:49.970Z,1443523309.970 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:50.369Z,1443523310.369 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:50.769Z,1443523310.769 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:51.170Z,1443523311.170 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:51.569Z,1443523311.569 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:51.980Z,1443523311.980 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:52.368Z,1443523312.368 [NAL9602](INFO): No messages in MT queue
2015-09-29T10:41:52.369Z,1443523312.369 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:52.770Z,1443523312.770 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:53.169Z,1443523313.169 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:53.570Z,1443523313.570 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:53.969Z,1443523313.969 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:54.370Z,1443523314.370 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:54.769Z,1443523314.769 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:55.169Z,1443523315.169 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:55.569Z,1443523315.569 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:55.969Z,1443523315.969 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:56.371Z,1443523316.371 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:56.770Z,1443523316.770 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:57.169Z,1443523317.169 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:57.204Z,1443523317.204 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T10:41:57.571Z,1443523317.571 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:57.969Z,1443523317.969 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:58.370Z,1443523318.370 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:58.770Z,1443523318.770 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:59.170Z,1443523319.170 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:59.569Z,1443523319.569 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:41:59.969Z,1443523319.969 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:42:00.369Z,1443523320.369 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:42:00.770Z,1443523320.770 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:42:01.169Z,1443523321.169 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T10:42:01.570Z,1443523321.570 [D