2015-09-29T09:14:31.656Z,1443518071.656 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T09:14:31.659Z,1443518071.659 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T09:14:31.660Z,1443518071.660 [SyncHandler](INFO): Protected caller Thread ID is 762
2015-09-29T09:14:31.661Z,1443518071.661 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T09:14:31.662Z,1443518071.662 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T09:14:31.662Z,1443518071.662 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T09:14:31.665Z,1443518071.665 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T09:14:31.677Z,1443518071.677 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T09:14:31.682Z,1443518071.682 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T09:14:31.682Z,1443518071.682 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T09:14:31.683Z,1443518071.683 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T09:14:31.686Z,1443518071.686 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T09:14:31.686Z,1443518071.686 [logger ThreadHandler](INFO): Protected caller Thread ID is 765
2015-09-29T09:14:31.689Z,1443518071.689 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T09:14:31.689Z,1443518071.689 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T09:14:31.693Z,1443518071.693 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T09:14:32.086Z,1443518072.086 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T09:14:32.088Z,1443518072.088 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T09:14:32.277Z,1443518072.277 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T09:14:32.279Z,1443518072.279 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T09:14:32.423Z,1443518072.423 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T09:14:32.423Z,1443518072.423 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T09:14:32.571Z,1443518072.571 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T09:14:32.572Z,1443518072.572 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T09:14:32.670Z,1443518072.670 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T09:14:32.891Z,1443518072.891 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T09:14:32.892Z,1443518072.892 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T09:14:32.991Z,1443518072.991 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T09:14:32.991Z,1443518072.991 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T09:14:33.305Z,1443518073.305 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T09:14:33.306Z,1443518073.306 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T09:14:33.707Z,1443518073.707 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T09:14:33.708Z,1443518073.708 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T09:14:34.059Z,1443518074.059 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T09:14:34.061Z,1443518074.061 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T09:14:34.660Z,1443518074.660 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T09:14:34.660Z,1443518074.660 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T09:14:34.891Z,1443518074.891 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T09:14:34.892Z,1443518074.892 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T09:14:35.011Z,1443518075.011 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T09:14:35.011Z,1443518075.011 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T09:14:35.526Z,1443518075.526 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T09:14:35.527Z,1443518075.527 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T09:14:35.730Z,1443518075.730 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T09:14:35.732Z,1443518075.732 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T09:14:35.732Z,1443518075.732 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T09:14:35.758Z,1443518075.758 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T09:14:35.834Z,1443518075.834 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T09:14:35.968Z,1443518075.968 [VerticalControl] Loaded
2015-09-29T09:14:35.969Z,1443518075.969 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T09:14:35.970Z,1443518075.970 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T09:14:36.050Z,1443518076.050 [HorizontalControl] Loaded
2015-09-29T09:14:36.051Z,1443518076.051 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T09:14:36.051Z,1443518076.051 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T09:14:36.061Z,1443518076.061 [SpeedControl] Loaded
2015-09-29T09:14:36.062Z,1443518076.062 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T09:14:36.062Z,1443518076.062 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T09:14:36.063Z,1443518076.063 [LoopControl] Loaded
2015-09-29T09:14:36.063Z,1443518076.063 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T09:14:36.064Z,1443518076.064 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T09:14:36.064Z,1443518076.064 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T09:14:36.224Z,1443518076.224 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T09:14:36.236Z,1443518076.236 [SBIT] Loaded
2015-09-29T09:14:36.236Z,1443518076.236 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T09:14:36.237Z,1443518076.237 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T09:14:36.271Z,1443518076.271 [IBIT] Loaded
2015-09-29T09:14:36.272Z,1443518076.272 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T09:14:36.274Z,1443518076.274 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T09:14:36.425Z,1443518076.425 [CBIT] Loaded
2015-09-29T09:14:36.425Z,1443518076.425 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T09:14:36.426Z,1443518076.426 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T09:14:36.430Z,1443518076.430 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T09:14:36.468Z,1443518076.468 [DepthRateCalculator] Loaded
2015-09-29T09:14:36.468Z,1443518076.468 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T09:14:36.478Z,1443518076.478 [PitchRateCalculator] Loaded
2015-09-29T09:14:36.478Z,1443518076.478 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T09:14:36.489Z,1443518076.489 [SpeedCalculator] Loaded
2015-09-29T09:14:36.490Z,1443518076.490 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T09:14:36.511Z,1443518076.511 [TempGradientCalculator] Loaded
2015-09-29T09:14:36.511Z,1443518076.511 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T09:14:36.529Z,1443518076.529 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T09:14:36.529Z,1443518076.529 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T09:14:36.534Z,1443518076.534 [YawRateCalculator] Loaded
2015-09-29T09:14:36.535Z,1443518076.535 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T09:14:36.535Z,1443518076.535 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T09:14:36.536Z,1443518076.536 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T09:14:36.651Z,1443518076.651 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T09:14:36.651Z,1443518076.651 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T09:14:36.651Z,1443518076.651 [StratificationFrontDetector] Loaded
2015-09-29T09:14:36.652Z,1443518076.652 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T09:14:36.652Z,1443518076.652 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T09:14:36.653Z,1443518076.653 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T09:14:36.943Z,1443518076.943 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T09:14:36.944Z,1443518076.944 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T09:14:37.077Z,1443518077.077 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T09:14:37.078Z,1443518077.078 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T09:14:37.138Z,1443518077.138 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T09:14:37.139Z,1443518077.139 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T09:14:37.161Z,1443518077.161 [NavChart] Loaded
2015-09-29T09:14:37.161Z,1443518077.161 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T09:14:37.166Z,1443518077.166 [UniversalFixResidualReporter] Loaded
2015-09-29T09:14:37.166Z,1443518077.166 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T09:14:37.167Z,1443518077.167 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T09:14:37.168Z,1443518077.168 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T09:14:37.176Z,1443518077.176 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T09:14:37.177Z,1443518077.177 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T09:14:37.471Z,1443518077.471 [CTD_NeilBrown] Loaded
2015-09-29T09:14:37.472Z,1443518077.472 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T09:14:37.474Z,1443518077.474 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T09:14:37.474Z,1443518077.474 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T09:14:37.487Z,1443518077.487 [ISUS] Loaded
2015-09-29T09:14:37.488Z,1443518077.488 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T09:14:37.502Z,1443518077.502 [PAR_Licor] Loaded
2015-09-29T09:14:37.503Z,1443518077.503 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T09:14:37.562Z,1443518077.562 [WetLabsBB2FL] Loaded
2015-09-29T09:14:37.563Z,1443518077.563 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T09:14:37.566Z,1443518077.566 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T09:14:37.566Z,1443518077.566 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T09:14:37.567Z,1443518077.567 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T09:14:37.568Z,1443518077.568 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T09:14:38.297Z,1443518078.297 [AHRS_sp3003D] Loaded
2015-09-29T09:14:38.297Z,1443518078.297 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T09:14:38.495Z,1443518078.495 [DataOverHttps] Loaded
2015-09-29T09:14:38.496Z,1443518078.496 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T09:14:38.509Z,1443518078.509 [Depth_Keller] Loaded
2015-09-29T09:14:38.510Z,1443518078.510 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T09:14:38.519Z,1443518078.519 [DropWeight] Loaded
2015-09-29T09:14:38.519Z,1443518078.519 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T09:14:38.671Z,1443518078.671 [DVL_micro] Loaded
2015-09-29T09:14:38.672Z,1443518078.672 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T09:14:38.780Z,1443518078.780 [NAL9602] Loaded
2015-09-29T09:14:38.780Z,1443518078.780 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T09:14:38.827Z,1443518078.827 [Onboard] Loaded
2015-09-29T09:14:38.827Z,1443518078.827 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T09:14:38.839Z,1443518078.839 [Radio_Surface] Loaded
2015-09-29T09:14:38.839Z,1443518078.839 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T09:14:38.842Z,1443518078.842 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T09:14:38.842Z,1443518078.842 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T09:14:38.998Z,1443518078.998 [DAT] Loaded
2015-09-29T09:14:38.998Z,1443518078.998 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T09:14:39.005Z,1443518079.005 [SCPI] Loaded
2015-09-29T09:14:39.005Z,1443518079.005 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T09:14:39.006Z,1443518079.006 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T09:14:39.007Z,1443518079.007 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T09:14:39.135Z,1443518079.135 [BuoyancyServo] Loaded
2015-09-29T09:14:39.135Z,1443518079.135 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T09:14:39.152Z,1443518079.152 [ElevatorServo] Loaded
2015-09-29T09:14:39.152Z,1443518079.152 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T09:14:39.164Z,1443518079.164 [MassServo] Loaded
2015-09-29T09:14:39.164Z,1443518079.164 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T09:14:39.177Z,1443518079.177 [RudderServo] Loaded
2015-09-29T09:14:39.177Z,1443518079.177 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T09:14:39.188Z,1443518079.188 [ThrusterServo] Loaded
2015-09-29T09:14:39.189Z,1443518079.189 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T09:14:39.189Z,1443518079.189 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T09:14:39.190Z,1443518079.190 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T09:14:39.396Z,1443518079.396 [InternalSim] Loaded
2015-09-29T09:14:39.396Z,1443518079.396 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T09:14:39.397Z,1443518079.397 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T09:14:39.397Z,1443518079.397 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T09:14:39.436Z,1443518079.436 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T09:14:39.445Z,1443518079.445 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T09:14:39.446Z,1443518079.446 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T09:14:39.452Z,1443518079.452 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T09:14:39.454Z,1443518079.454 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T09:14:39.454Z,1443518079.454 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 814
2015-09-29T09:14:39.459Z,1443518079.459 [Supervisor](INFO): Main Thread ID is 761
2015-09-29T09:14:39.459Z,1443518079.459 [Supervisor](DEBUG): Running supervisor.
2015-09-29T09:14:39.460Z,1443518079.460 [CommandLine ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T09:14:39.466Z,1443518079.466 [controlThread ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T09:14:39.467Z,1443518079.467 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T09:14:39.468Z,1443518079.468 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T09:14:39.470Z,1443518079.470 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T09:14:39.470Z,1443518079.470 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T09:14:39.471Z,1443518079.471 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T09:14:39.471Z,1443518079.471 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T09:14:39.472Z,1443518079.472 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T09:14:39.473Z,1443518079.473 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T09:14:39.474Z,1443518079.474 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T09:14:39.475Z,1443518079.475 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T09:14:39.475Z,1443518079.475 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T09:14:39.476Z,1443518079.476 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T09:14:39.476Z,1443518079.476 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T09:14:39.476Z,1443518079.476 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T09:14:39.477Z,1443518079.477 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T09:14:39.477Z,1443518079.477 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T09:14:39.477Z,1443518079.477 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T09:14:39.478Z,1443518079.478 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T09:14:39.478Z,1443518079.478 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T09:14:39.479Z,1443518079.479 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T09:14:39.479Z,1443518079.479 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T09:14:39.480Z,1443518079.480 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T09:14:39.480Z,1443518079.480 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T09:14:39.481Z,1443518079.481 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T09:14:39.481Z,1443518079.481 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T09:14:39.482Z,1443518079.482 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T09:14:39.482Z,1443518079.482 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T09:14:39.482Z,1443518079.482 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T09:14:39.487Z,1443518079.487 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T09:14:39.522Z,1443518079.522 [logger ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T09:14:39.622Z,1443518079.622 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T09:14:39.624Z,1443518079.624 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T09:14:39.690Z,1443518079.690 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T09:14:39.707Z,1443518079.707 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T09:14:39.714Z,1443518079.714 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T09:14:39.716Z,1443518079.716 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T09:14:39.716Z,1443518079.716 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T09:14:39.717Z,1443518079.717 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T09:14:39.717Z,1443518079.717 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T09:14:39.717Z,1443518079.717 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T09:14:39.717Z,1443518079.717 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T09:14:39.718Z,1443518079.718 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T09:14:39.718Z,1443518079.718 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T09:14:39.722Z,1443518079.722 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T09:14:39.778Z,1443518079.778 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T09:14:39.788Z,1443518079.788 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T09:14:39.789Z,1443518079.789 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T09:14:39.872Z,1443518079.872 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T09:14:39.873Z,1443518079.873 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T09:14:39.920Z,1443518079.920 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T09:14:39.922Z,1443518079.922 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T09:14:39.941Z,1443518079.941 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T09:14:39.945Z,1443518079.945 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T09:14:39.959Z,1443518079.959 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T09:14:40.187Z,1443518080.187 [DVL_micro](INFO): Initializing
2015-09-29T09:14:40.355Z,1443518080.355 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T09:14:40.386Z,1443518080.386 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T09:14:40.494Z,1443518080.494 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T09:14:40.500Z,1443518080.500 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T09:14:40.522Z,1443518080.522 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T09:14:40.547Z,1443518080.547 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T09:14:40.558Z,1443518080.558 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T09:14:40.819Z,1443518080.819 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T09:14:40.821Z,1443518080.821 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T09:14:49.910Z,1443518089.910 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:50.251Z,1443518090.251 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:50.397Z,1443518090.397 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:50.790Z,1443518090.790 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003700
2015-09-29T09:14:50.793Z,1443518090.793 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:51.188Z,1443518091.188 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:51.588Z,1443518091.588 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:51.987Z,1443518091.987 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:52.388Z,1443518092.388 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:52.787Z,1443518092.787 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:53.187Z,1443518093.187 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:53.586Z,1443518093.586 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:53.988Z,1443518093.988 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:54.386Z,1443518094.386 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:54.787Z,1443518094.787 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:55.186Z,1443518095.186 [NAL9602](INFO): No messages in MT queue
2015-09-29T09:14:55.187Z,1443518095.187 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:55.586Z,1443518095.586 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:55.988Z,1443518095.988 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:56.387Z,1443518096.387 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:56.787Z,1443518096.787 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:57.186Z,1443518097.186 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:57.587Z,1443518097.587 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:57.987Z,1443518097.987 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:58.387Z,1443518098.387 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:58.787Z,1443518098.787 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:59.187Z,1443518099.187 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:59.587Z,1443518099.587 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:14:59.987Z,1443518099.987 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:15:00.025Z,1443518100.025 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T09:15:00.387Z,1443518100.387 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:15:00.788Z,1443518100.788 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:15:01.188Z,1443518101.188 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:15:01.587Z,1443518101.587 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:15:01.987Z,1443518101.987 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:15:02.387Z,1443518102.387 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:15:02.787Z,1443518102.787 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:15:03.186Z,1443518103.186 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:15:03.587Z,1443518103.587 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:15:03.987Z,1443518103.987 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:15:04.387Z,1443518104.387 [D