2015-09-29T09:06:36.290Z,1443517596.290 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T09:06:36.293Z,1443517596.293 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T09:06:36.294Z,1443517596.294 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T09:06:36.294Z,1443517596.294 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T09:06:36.297Z,1443517596.297 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T09:06:36.298Z,1443517596.298 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T09:06:36.300Z,1443517596.300 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T09:06:36.313Z,1443517596.313 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T09:06:36.317Z,1443517596.317 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T09:06:36.318Z,1443517596.318 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T09:06:36.318Z,1443517596.318 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T09:06:36.321Z,1443517596.321 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T09:06:36.322Z,1443517596.322 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T09:06:36.324Z,1443517596.324 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T09:06:36.324Z,1443517596.324 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T09:06:36.328Z,1443517596.328 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T09:06:36.730Z,1443517596.730 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T09:06:36.732Z,1443517596.732 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T09:06:36.924Z,1443517596.924 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T09:06:36.926Z,1443517596.926 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T09:06:37.074Z,1443517597.074 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T09:06:37.075Z,1443517597.075 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T09:06:37.222Z,1443517597.222 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T09:06:37.223Z,1443517597.223 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T09:06:37.318Z,1443517597.318 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T09:06:37.542Z,1443517597.542 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T09:06:37.543Z,1443517597.543 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T09:06:37.638Z,1443517597.638 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T09:06:37.639Z,1443517597.639 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T09:06:37.954Z,1443517597.954 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T09:06:37.955Z,1443517597.955 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T09:06:38.358Z,1443517598.358 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T09:06:38.359Z,1443517598.359 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T09:06:38.718Z,1443517598.718 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T09:06:38.720Z,1443517598.720 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T09:06:39.323Z,1443517599.323 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T09:06:39.324Z,1443517599.324 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T09:06:39.558Z,1443517599.558 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T09:06:39.559Z,1443517599.559 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T09:06:39.670Z,1443517599.670 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T09:06:39.671Z,1443517599.671 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T09:06:40.221Z,1443517600.221 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T09:06:40.221Z,1443517600.221 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T09:06:40.345Z,1443517600.345 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T09:06:40.347Z,1443517600.347 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T09:06:40.347Z,1443517600.347 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T09:06:40.352Z,1443517600.352 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T09:06:40.426Z,1443517600.426 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T09:06:40.558Z,1443517600.558 [VerticalControl] Loaded
2015-09-29T09:06:40.559Z,1443517600.559 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T09:06:40.559Z,1443517600.559 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T09:06:40.639Z,1443517600.639 [HorizontalControl] Loaded
2015-09-29T09:06:40.640Z,1443517600.640 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T09:06:40.640Z,1443517600.640 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T09:06:40.646Z,1443517600.646 [SpeedControl] Loaded
2015-09-29T09:06:40.647Z,1443517600.647 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T09:06:40.647Z,1443517600.647 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T09:06:40.648Z,1443517600.648 [LoopControl] Loaded
2015-09-29T09:06:40.648Z,1443517600.648 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T09:06:40.648Z,1443517600.648 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T09:06:40.649Z,1443517600.649 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T09:06:40.806Z,1443517600.806 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T09:06:40.818Z,1443517600.818 [SBIT] Loaded
2015-09-29T09:06:40.819Z,1443517600.819 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T09:06:40.819Z,1443517600.819 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T09:06:40.853Z,1443517600.853 [IBIT] Loaded
2015-09-29T09:06:40.853Z,1443517600.853 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T09:06:40.855Z,1443517600.855 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T09:06:41.009Z,1443517601.009 [CBIT] Loaded
2015-09-29T09:06:41.009Z,1443517601.009 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T09:06:41.010Z,1443517601.010 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T09:06:41.010Z,1443517601.010 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T09:06:41.052Z,1443517601.052 [DepthRateCalculator] Loaded
2015-09-29T09:06:41.052Z,1443517601.052 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T09:06:41.057Z,1443517601.057 [PitchRateCalculator] Loaded
2015-09-29T09:06:41.058Z,1443517601.058 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T09:06:41.069Z,1443517601.069 [SpeedCalculator] Loaded
2015-09-29T09:06:41.070Z,1443517601.070 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T09:06:41.091Z,1443517601.091 [TempGradientCalculator] Loaded
2015-09-29T09:06:41.091Z,1443517601.091 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T09:06:41.108Z,1443517601.108 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T09:06:41.108Z,1443517601.108 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T09:06:41.117Z,1443517601.117 [YawRateCalculator] Loaded
2015-09-29T09:06:41.118Z,1443517601.118 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T09:06:41.118Z,1443517601.118 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T09:06:41.119Z,1443517601.119 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T09:06:41.242Z,1443517601.242 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T09:06:41.242Z,1443517601.242 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T09:06:41.242Z,1443517601.242 [StratificationFrontDetector] Loaded
2015-09-29T09:06:41.243Z,1443517601.243 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T09:06:41.243Z,1443517601.243 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T09:06:41.244Z,1443517601.244 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T09:06:41.510Z,1443517601.510 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T09:06:41.510Z,1443517601.510 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T09:06:41.630Z,1443517601.630 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T09:06:41.630Z,1443517601.630 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T09:06:41.686Z,1443517601.686 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T09:06:41.686Z,1443517601.686 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T09:06:41.704Z,1443517601.704 [NavChart] Loaded
2015-09-29T09:06:41.704Z,1443517601.704 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T09:06:41.709Z,1443517601.709 [UniversalFixResidualReporter] Loaded
2015-09-29T09:06:41.710Z,1443517601.710 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T09:06:41.710Z,1443517601.710 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T09:06:41.711Z,1443517601.711 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T09:06:41.719Z,1443517601.719 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T09:06:41.720Z,1443517601.720 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T09:06:42.002Z,1443517602.002 [CTD_NeilBrown] Loaded
2015-09-29T09:06:42.002Z,1443517602.002 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T09:06:42.004Z,1443517602.004 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T09:06:42.004Z,1443517602.004 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T09:06:42.017Z,1443517602.017 [ISUS] Loaded
2015-09-29T09:06:42.017Z,1443517602.017 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T09:06:42.031Z,1443517602.031 [PAR_Licor] Loaded
2015-09-29T09:06:42.032Z,1443517602.032 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T09:06:42.083Z,1443517602.083 [WetLabsBB2FL] Loaded
2015-09-29T09:06:42.084Z,1443517602.084 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T09:06:42.085Z,1443517602.085 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T09:06:42.085Z,1443517602.085 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T09:06:42.086Z,1443517602.086 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T09:06:42.086Z,1443517602.086 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T09:06:42.731Z,1443517602.731 [AHRS_sp3003D] Loaded
2015-09-29T09:06:42.731Z,1443517602.731 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T09:06:42.904Z,1443517602.904 [DataOverHttps] Loaded
2015-09-29T09:06:42.904Z,1443517602.904 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T09:06:42.917Z,1443517602.917 [Depth_Keller] Loaded
2015-09-29T09:06:42.918Z,1443517602.918 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T09:06:42.923Z,1443517602.923 [DropWeight] Loaded
2015-09-29T09:06:42.923Z,1443517602.923 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T09:06:43.061Z,1443517603.061 [DVL_micro] Loaded
2015-09-29T09:06:43.061Z,1443517603.061 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T09:06:43.157Z,1443517603.157 [NAL9602] Loaded
2015-09-29T09:06:43.157Z,1443517603.157 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T09:06:43.200Z,1443517603.200 [Onboard] Loaded
2015-09-29T09:06:43.200Z,1443517603.200 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T09:06:43.211Z,1443517603.211 [Radio_Surface] Loaded
2015-09-29T09:06:43.212Z,1443517603.212 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T09:06:43.213Z,1443517603.213 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T09:06:43.213Z,1443517603.213 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T09:06:43.355Z,1443517603.355 [DAT] Loaded
2015-09-29T09:06:43.355Z,1443517603.355 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T09:06:43.362Z,1443517603.362 [SCPI] Loaded
2015-09-29T09:06:43.362Z,1443517603.362 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T09:06:43.362Z,1443517603.362 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T09:06:43.363Z,1443517603.363 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T09:06:43.484Z,1443517603.484 [BuoyancyServo] Loaded
2015-09-29T09:06:43.484Z,1443517603.484 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T09:06:43.497Z,1443517603.497 [ElevatorServo] Loaded
2015-09-29T09:06:43.497Z,1443517603.497 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T09:06:43.509Z,1443517603.509 [MassServo] Loaded
2015-09-29T09:06:43.509Z,1443517603.509 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T09:06:43.521Z,1443517603.521 [RudderServo] Loaded
2015-09-29T09:06:43.521Z,1443517603.521 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T09:06:43.533Z,1443517603.533 [ThrusterServo] Loaded
2015-09-29T09:06:43.533Z,1443517603.533 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T09:06:43.533Z,1443517603.533 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T09:06:43.534Z,1443517603.534 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T09:06:43.715Z,1443517603.715 [InternalSim] Loaded
2015-09-29T09:06:43.715Z,1443517603.715 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T09:06:43.716Z,1443517603.716 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T09:06:43.717Z,1443517603.717 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T09:06:43.756Z,1443517603.756 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T09:06:43.760Z,1443517603.760 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T09:06:43.761Z,1443517603.761 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T09:06:43.767Z,1443517603.767 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T09:06:43.768Z,1443517603.768 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T09:06:43.769Z,1443517603.769 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T09:06:43.774Z,1443517603.774 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T09:06:43.774Z,1443517603.774 [Supervisor](DEBUG): Running supervisor.
2015-09-29T09:06:43.774Z,1443517603.774 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T09:06:43.777Z,1443517603.777 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T09:06:43.778Z,1443517603.778 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T09:06:43.779Z,1443517603.779 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T09:06:43.780Z,1443517603.780 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T09:06:43.781Z,1443517603.781 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T09:06:43.782Z,1443517603.782 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T09:06:43.782Z,1443517603.782 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T09:06:43.783Z,1443517603.783 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T09:06:43.784Z,1443517603.784 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T09:06:43.784Z,1443517603.784 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T09:06:43.785Z,1443517603.785 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T09:06:43.786Z,1443517603.786 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T09:06:43.787Z,1443517603.787 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T09:06:43.787Z,1443517603.787 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T09:06:43.787Z,1443517603.787 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T09:06:43.788Z,1443517603.788 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T09:06:43.788Z,1443517603.788 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T09:06:43.788Z,1443517603.788 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T09:06:43.789Z,1443517603.789 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T09:06:43.789Z,1443517603.789 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T09:06:43.790Z,1443517603.790 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T09:06:43.791Z,1443517603.791 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T09:06:43.791Z,1443517603.791 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T09:06:43.792Z,1443517603.792 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T09:06:43.792Z,1443517603.792 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T09:06:43.793Z,1443517603.793 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T09:06:43.793Z,1443517603.793 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T09:06:43.794Z,1443517603.794 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T09:06:43.794Z,1443517603.794 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T09:06:43.799Z,1443517603.799 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T09:06:43.814Z,1443517603.814 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T09:06:43.858Z,1443517603.858 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T09:06:43.920Z,1443517603.920 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T09:06:43.930Z,1443517603.930 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T09:06:43.987Z,1443517603.987 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T09:06:43.995Z,1443517603.995 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T09:06:43.997Z,1443517603.997 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T09:06:43.997Z,1443517603.997 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T09:06:43.998Z,1443517603.998 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T09:06:43.998Z,1443517603.998 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T09:06:43.998Z,1443517603.998 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T09:06:43.998Z,1443517603.998 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T09:06:43.999Z,1443517603.999 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T09:06:43.999Z,1443517603.999 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T09:06:44.029Z,1443517604.029 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T09:06:44.079Z,1443517604.079 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T09:06:44.105Z,1443517604.105 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T09:06:44.126Z,1443517604.126 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T09:06:44.197Z,1443517604.197 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T09:06:44.198Z,1443517604.198 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T09:06:44.242Z,1443517604.242 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T09:06:44.244Z,1443517604.244 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T09:06:44.264Z,1443517604.264 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T09:06:44.268Z,1443517604.268 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T09:06:44.279Z,1443517604.279 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T09:06:44.461Z,1443517604.461 [DVL_micro](INFO): Initializing
2015-09-29T09:06:44.638Z,1443517604.638 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T09:06:44.645Z,1443517604.645 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T09:06:44.763Z,1443517604.763 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T09:06:44.773Z,1443517604.773 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T09:06:44.782Z,1443517604.782 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T09:06:44.801Z,1443517604.801 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T09:06:44.806Z,1443517604.806 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T09:06:45.068Z,1443517605.068 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T09:06:45.069Z,1443517605.069 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T09:06:53.821Z,1443517613.821 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:54.156Z,1443517614.156 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:54.292Z,1443517614.292 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:54.693Z,1443517614.693 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T09:06:54.696Z,1443517614.696 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:55.090Z,1443517615.090 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:55.491Z,1443517615.491 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:55.891Z,1443517615.891 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:56.290Z,1443517616.290 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:56.690Z,1443517616.690 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:57.090Z,1443517617.090 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:57.490Z,1443517617.490 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:57.890Z,1443517617.890 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:58.290Z,1443517618.290 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:58.691Z,1443517618.691 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:59.089Z,1443517619.089 [NAL9602](INFO): No messages in MT queue
2015-09-29T09:06:59.090Z,1443517619.090 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:59.490Z,1443517619.490 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:06:59.890Z,1443517619.890 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:00.290Z,1443517620.290 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:00.690Z,1443517620.690 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:01.090Z,1443517621.090 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:01.490Z,1443517621.490 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:01.890Z,1443517621.890 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:02.290Z,1443517622.290 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:02.690Z,1443517622.690 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:03.090Z,1443517623.090 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:03.490Z,1443517623.490 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:03.890Z,1443517623.890 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:04.290Z,1443517624.290 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:04.304Z,1443517624.304 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T09:07:04.690Z,1443517624.690 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:05.090Z,1443517625.090 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:05.490Z,1443517625.490 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:05.890Z,1443517625.890 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:06.290Z,1443517626.290 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:06.690Z,1443517626.690 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:07.090Z,1443517627.090 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:07.490Z,1443517627.490 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:07.890Z,1443517627.890 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T09:07:08.290Z,1443517628.290 [D