2015-09-29T08:58:40.814Z,1443517120.814 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T08:58:40.817Z,1443517120.817 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T08:58:40.818Z,1443517120.818 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T08:58:40.818Z,1443517120.818 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T08:58:40.821Z,1443517120.821 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T08:58:40.822Z,1443517120.822 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T08:58:40.824Z,1443517120.824 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T08:58:40.837Z,1443517120.837 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T08:58:40.841Z,1443517120.841 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T08:58:40.842Z,1443517120.842 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T08:58:40.842Z,1443517120.842 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T08:58:40.845Z,1443517120.845 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T08:58:40.846Z,1443517120.846 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T08:58:40.848Z,1443517120.848 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T08:58:40.848Z,1443517120.848 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T08:58:40.852Z,1443517120.852 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T08:58:41.255Z,1443517121.255 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T08:58:41.257Z,1443517121.257 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T08:58:41.450Z,1443517121.450 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T08:58:41.452Z,1443517121.452 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T08:58:41.598Z,1443517121.598 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T08:58:41.599Z,1443517121.599 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T08:58:41.750Z,1443517121.750 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T08:58:41.751Z,1443517121.751 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T08:58:41.846Z,1443517121.846 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T08:58:42.070Z,1443517122.070 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T08:58:42.071Z,1443517122.071 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T08:58:42.170Z,1443517122.170 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T08:58:42.170Z,1443517122.170 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T08:58:42.490Z,1443517122.490 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T08:58:42.491Z,1443517122.491 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T08:58:42.894Z,1443517122.894 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T08:58:42.895Z,1443517122.895 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T08:58:43.254Z,1443517123.254 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T08:58:43.256Z,1443517123.256 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T08:58:43.859Z,1443517123.859 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T08:58:43.859Z,1443517123.859 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T08:58:44.097Z,1443517124.097 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T08:58:44.097Z,1443517124.097 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T08:58:44.210Z,1443517124.210 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T08:58:44.210Z,1443517124.210 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T08:58:44.734Z,1443517124.734 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T08:58:44.734Z,1443517124.734 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T08:58:44.910Z,1443517124.910 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T08:58:44.912Z,1443517124.912 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T08:58:44.912Z,1443517124.912 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T08:58:44.917Z,1443517124.917 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T08:58:44.991Z,1443517124.991 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T08:58:45.130Z,1443517125.130 [VerticalControl] Loaded
2015-09-29T08:58:45.130Z,1443517125.130 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T08:58:45.131Z,1443517125.131 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T08:58:45.212Z,1443517125.212 [HorizontalControl] Loaded
2015-09-29T08:58:45.212Z,1443517125.212 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T08:58:45.213Z,1443517125.213 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T08:58:45.219Z,1443517125.219 [SpeedControl] Loaded
2015-09-29T08:58:45.219Z,1443517125.219 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T08:58:45.220Z,1443517125.220 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T08:58:45.221Z,1443517125.221 [LoopControl] Loaded
2015-09-29T08:58:45.221Z,1443517125.221 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T08:58:45.221Z,1443517125.221 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T08:58:45.222Z,1443517125.222 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T08:58:45.385Z,1443517125.385 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T08:58:45.397Z,1443517125.397 [SBIT] Loaded
2015-09-29T08:58:45.398Z,1443517125.398 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T08:58:45.399Z,1443517125.399 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T08:58:45.432Z,1443517125.432 [IBIT] Loaded
2015-09-29T08:58:45.433Z,1443517125.433 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T08:58:45.435Z,1443517125.435 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T08:58:45.590Z,1443517125.590 [CBIT] Loaded
2015-09-29T08:58:45.590Z,1443517125.590 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T08:58:45.591Z,1443517125.591 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T08:58:45.592Z,1443517125.592 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T08:58:45.633Z,1443517125.633 [DepthRateCalculator] Loaded
2015-09-29T08:58:45.633Z,1443517125.633 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T08:58:45.638Z,1443517125.638 [PitchRateCalculator] Loaded
2015-09-29T08:58:45.639Z,1443517125.639 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T08:58:45.650Z,1443517125.650 [SpeedCalculator] Loaded
2015-09-29T08:58:45.650Z,1443517125.650 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T08:58:45.672Z,1443517125.672 [TempGradientCalculator] Loaded
2015-09-29T08:58:45.672Z,1443517125.672 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T08:58:45.689Z,1443517125.689 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T08:58:45.690Z,1443517125.690 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T08:58:45.695Z,1443517125.695 [YawRateCalculator] Loaded
2015-09-29T08:58:45.695Z,1443517125.695 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T08:58:45.696Z,1443517125.696 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T08:58:45.696Z,1443517125.696 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T08:58:45.822Z,1443517125.822 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T08:58:45.822Z,1443517125.822 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T08:58:45.822Z,1443517125.822 [StratificationFrontDetector] Loaded
2015-09-29T08:58:45.823Z,1443517125.823 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T08:58:45.823Z,1443517125.823 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T08:58:45.824Z,1443517125.824 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T08:58:46.117Z,1443517126.117 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T08:58:46.118Z,1443517126.118 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T08:58:46.252Z,1443517126.252 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T08:58:46.252Z,1443517126.252 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T08:58:46.314Z,1443517126.314 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T08:58:46.314Z,1443517126.314 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T08:58:46.336Z,1443517126.336 [NavChart] Loaded
2015-09-29T08:58:46.336Z,1443517126.336 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T08:58:46.341Z,1443517126.341 [UniversalFixResidualReporter] Loaded
2015-09-29T08:58:46.342Z,1443517126.342 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T08:58:46.342Z,1443517126.342 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T08:58:46.343Z,1443517126.343 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T08:58:46.351Z,1443517126.351 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T08:58:46.352Z,1443517126.352 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T08:58:46.654Z,1443517126.654 [CTD_NeilBrown] Loaded
2015-09-29T08:58:46.655Z,1443517126.655 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T08:58:46.657Z,1443517126.657 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T08:58:46.657Z,1443517126.657 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T08:58:46.671Z,1443517126.671 [ISUS] Loaded
2015-09-29T08:58:46.671Z,1443517126.671 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T08:58:46.690Z,1443517126.690 [PAR_Licor] Loaded
2015-09-29T08:58:46.690Z,1443517126.690 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T08:58:46.746Z,1443517126.746 [WetLabsBB2FL] Loaded
2015-09-29T08:58:46.746Z,1443517126.746 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T08:58:46.749Z,1443517126.749 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T08:58:46.750Z,1443517126.750 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T08:58:46.750Z,1443517126.750 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T08:58:46.751Z,1443517126.751 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T08:58:47.469Z,1443517127.469 [AHRS_sp3003D] Loaded
2015-09-29T08:58:47.469Z,1443517127.469 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T08:58:47.662Z,1443517127.662 [DataOverHttps] Loaded
2015-09-29T08:58:47.663Z,1443517127.663 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T08:58:47.676Z,1443517127.676 [Depth_Keller] Loaded
2015-09-29T08:58:47.677Z,1443517127.677 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T08:58:47.682Z,1443517127.682 [DropWeight] Loaded
2015-09-29T08:58:47.682Z,1443517127.682 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T08:58:47.839Z,1443517127.839 [DVL_micro] Loaded
2015-09-29T08:58:47.839Z,1443517127.839 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T08:58:47.944Z,1443517127.944 [NAL9602] Loaded
2015-09-29T08:58:47.944Z,1443517127.944 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T08:58:47.995Z,1443517127.995 [Onboard] Loaded
2015-09-29T08:58:47.995Z,1443517127.995 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T08:58:48.007Z,1443517128.007 [Radio_Surface] Loaded
2015-09-29T08:58:48.007Z,1443517128.007 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T08:58:48.009Z,1443517128.009 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T08:58:48.010Z,1443517128.010 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T08:58:48.170Z,1443517128.170 [DAT] Loaded
2015-09-29T08:58:48.170Z,1443517128.170 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T08:58:48.177Z,1443517128.177 [SCPI] Loaded
2015-09-29T08:58:48.177Z,1443517128.177 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T08:58:48.178Z,1443517128.178 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T08:58:48.179Z,1443517128.179 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T08:58:48.313Z,1443517128.313 [BuoyancyServo] Loaded
2015-09-29T08:58:48.313Z,1443517128.313 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T08:58:48.326Z,1443517128.326 [ElevatorServo] Loaded
2015-09-29T08:58:48.327Z,1443517128.327 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T08:58:48.339Z,1443517128.339 [MassServo] Loaded
2015-09-29T08:58:48.339Z,1443517128.339 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T08:58:48.351Z,1443517128.351 [RudderServo] Loaded
2015-09-29T08:58:48.351Z,1443517128.351 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T08:58:48.367Z,1443517128.367 [ThrusterServo] Loaded
2015-09-29T08:58:48.367Z,1443517128.367 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T08:58:48.367Z,1443517128.367 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T08:58:48.368Z,1443517128.368 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T08:58:48.570Z,1443517128.570 [InternalSim] Loaded
2015-09-29T08:58:48.570Z,1443517128.570 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T08:58:48.571Z,1443517128.571 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T08:58:48.572Z,1443517128.572 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T08:58:48.615Z,1443517128.615 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T08:58:48.619Z,1443517128.619 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T08:58:48.620Z,1443517128.620 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T08:58:48.626Z,1443517128.626 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T08:58:48.629Z,1443517128.629 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T08:58:48.630Z,1443517128.630 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T08:58:48.634Z,1443517128.634 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T08:58:48.634Z,1443517128.634 [Supervisor](DEBUG): Running supervisor.
2015-09-29T08:58:48.635Z,1443517128.635 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T08:58:48.642Z,1443517128.642 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T08:58:48.642Z,1443517128.642 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T08:58:48.643Z,1443517128.643 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T08:58:48.645Z,1443517128.645 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T08:58:48.646Z,1443517128.646 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T08:58:48.646Z,1443517128.646 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T08:58:48.647Z,1443517128.647 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T08:58:48.647Z,1443517128.647 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T08:58:48.648Z,1443517128.648 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T08:58:48.649Z,1443517128.649 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T08:58:48.650Z,1443517128.650 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T08:58:48.650Z,1443517128.650 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T08:58:48.651Z,1443517128.651 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T08:58:48.651Z,1443517128.651 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T08:58:48.652Z,1443517128.652 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T08:58:48.652Z,1443517128.652 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T08:58:48.652Z,1443517128.652 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T08:58:48.652Z,1443517128.652 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T08:58:48.653Z,1443517128.653 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T08:58:48.653Z,1443517128.653 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T08:58:48.654Z,1443517128.654 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T08:58:48.655Z,1443517128.655 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T08:58:48.655Z,1443517128.655 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T08:58:48.656Z,1443517128.656 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T08:58:48.656Z,1443517128.656 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T08:58:48.656Z,1443517128.656 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T08:58:48.657Z,1443517128.657 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T08:58:48.657Z,1443517128.657 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T08:58:48.658Z,1443517128.658 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T08:58:48.662Z,1443517128.662 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T08:58:48.698Z,1443517128.698 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T08:58:48.798Z,1443517128.798 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T08:58:48.799Z,1443517128.799 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T08:58:48.869Z,1443517128.869 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T08:58:48.893Z,1443517128.893 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T08:58:48.914Z,1443517128.914 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T08:58:48.932Z,1443517128.932 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T08:58:48.934Z,1443517128.934 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T08:58:48.934Z,1443517128.934 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T08:58:48.934Z,1443517128.934 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T08:58:48.935Z,1443517128.935 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T08:58:48.935Z,1443517128.935 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T08:58:48.935Z,1443517128.935 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T08:58:48.935Z,1443517128.935 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T08:58:48.936Z,1443517128.936 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T08:58:48.967Z,1443517128.967 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T08:58:48.991Z,1443517128.991 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T08:58:48.992Z,1443517128.992 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T08:58:49.059Z,1443517129.059 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T08:58:49.060Z,1443517129.060 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T08:58:49.104Z,1443517129.104 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T08:58:49.106Z,1443517129.106 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T08:58:49.129Z,1443517129.129 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T08:58:49.132Z,1443517129.132 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T08:58:49.143Z,1443517129.143 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T08:58:49.361Z,1443517129.361 [DVL_micro](INFO): Initializing
2015-09-29T08:58:49.542Z,1443517129.542 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:58:49.553Z,1443517129.553 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:58:49.670Z,1443517129.670 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T08:58:49.676Z,1443517129.676 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T08:58:49.697Z,1443517129.697 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T08:58:49.702Z,1443517129.702 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T08:58:49.721Z,1443517129.721 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T08:58:49.935Z,1443517129.935 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:58:49.936Z,1443517129.936 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:58:58.985Z,1443517138.985 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:58:59.293Z,1443517139.293 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:58:59.449Z,1443517139.449 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:58:59.848Z,1443517139.848 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T08:58:59.852Z,1443517139.852 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:00.247Z,1443517140.247 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:00.647Z,1443517140.647 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:01.047Z,1443517141.047 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:01.446Z,1443517141.446 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:01.846Z,1443517141.846 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:02.247Z,1443517142.247 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:02.645Z,1443517142.645 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:03.051Z,1443517143.051 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:03.446Z,1443517143.446 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:03.846Z,1443517143.846 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:04.245Z,1443517144.245 [NAL9602](INFO): No messages in MT queue
2015-09-29T08:59:04.246Z,1443517144.246 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:04.647Z,1443517144.647 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:05.046Z,1443517145.046 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:05.445Z,1443517145.445 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:05.846Z,1443517145.846 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:06.246Z,1443517146.246 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:06.646Z,1443517146.646 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:07.047Z,1443517147.047 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:07.445Z,1443517147.445 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:07.846Z,1443517147.846 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:08.246Z,1443517148.246 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:08.646Z,1443517148.646 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:09.045Z,1443517149.045 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:09.083Z,1443517149.083 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T08:59:09.446Z,1443517149.446 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:09.846Z,1443517149.846 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:10.246Z,1443517150.246 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:10.646Z,1443517150.646 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:11.049Z,1443517151.049 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:11.446Z,1443517151.446 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:11.846Z,1443517151.846 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:12.246Z,1443517152.246 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:12.646Z,1443517152.646 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:13.046Z,1443517153.046 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:59:13.446Z,1443517153.446 [D