2015-09-29T08:27:09.984Z,1443515229.984 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T08:27:09.990Z,1443515229.990 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T08:27:09.991Z,1443515229.991 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T08:27:09.992Z,1443515229.992 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T08:27:09.994Z,1443515229.994 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T08:27:09.995Z,1443515229.995 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T08:27:09.998Z,1443515229.998 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T08:27:10.011Z,1443515230.011 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T08:27:10.014Z,1443515230.014 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T08:27:10.015Z,1443515230.015 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T08:27:10.016Z,1443515230.016 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T08:27:10.018Z,1443515230.018 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T08:27:10.019Z,1443515230.019 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T08:27:10.021Z,1443515230.021 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T08:27:10.022Z,1443515230.022 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T08:27:10.025Z,1443515230.025 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T08:27:10.436Z,1443515230.436 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T08:27:10.437Z,1443515230.437 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T08:27:10.639Z,1443515230.639 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T08:27:10.641Z,1443515230.641 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T08:27:10.787Z,1443515230.787 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T08:27:10.788Z,1443515230.788 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T08:27:10.939Z,1443515230.939 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T08:27:10.940Z,1443515230.940 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T08:27:11.040Z,1443515231.040 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T08:27:11.263Z,1443515231.263 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T08:27:11.264Z,1443515231.264 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T08:27:11.363Z,1443515231.363 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T08:27:11.364Z,1443515231.364 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T08:27:11.684Z,1443515231.684 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T08:27:11.685Z,1443515231.685 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T08:27:12.096Z,1443515232.096 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T08:27:12.097Z,1443515232.097 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T08:27:12.455Z,1443515232.455 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T08:27:12.457Z,1443515232.457 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T08:27:13.076Z,1443515233.076 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T08:27:13.077Z,1443515233.077 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T08:27:13.320Z,1443515233.320 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T08:27:13.321Z,1443515233.321 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T08:27:13.441Z,1443515233.441 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T08:27:13.442Z,1443515233.442 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T08:27:14.020Z,1443515234.020 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T08:27:14.021Z,1443515234.021 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T08:27:14.146Z,1443515234.146 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T08:27:14.148Z,1443515234.148 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T08:27:14.148Z,1443515234.148 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T08:27:14.153Z,1443515234.153 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T08:27:14.227Z,1443515234.227 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T08:27:14.364Z,1443515234.364 [VerticalControl] Loaded
2015-09-29T08:27:14.364Z,1443515234.364 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T08:27:14.365Z,1443515234.365 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T08:27:14.447Z,1443515234.447 [HorizontalControl] Loaded
2015-09-29T08:27:14.448Z,1443515234.448 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T08:27:14.448Z,1443515234.448 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T08:27:14.455Z,1443515234.455 [SpeedControl] Loaded
2015-09-29T08:27:14.455Z,1443515234.455 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T08:27:14.456Z,1443515234.456 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T08:27:14.456Z,1443515234.456 [LoopControl] Loaded
2015-09-29T08:27:14.456Z,1443515234.456 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T08:27:14.457Z,1443515234.457 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T08:27:14.458Z,1443515234.458 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T08:27:14.618Z,1443515234.618 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T08:27:14.631Z,1443515234.631 [SBIT] Loaded
2015-09-29T08:27:14.631Z,1443515234.631 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T08:27:14.632Z,1443515234.632 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T08:27:14.666Z,1443515234.666 [IBIT] Loaded
2015-09-29T08:27:14.667Z,1443515234.667 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T08:27:14.669Z,1443515234.669 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T08:27:14.826Z,1443515234.826 [CBIT] Loaded
2015-09-29T08:27:14.826Z,1443515234.826 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T08:27:14.827Z,1443515234.827 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T08:27:14.827Z,1443515234.827 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T08:27:14.869Z,1443515234.869 [DepthRateCalculator] Loaded
2015-09-29T08:27:14.869Z,1443515234.869 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T08:27:14.875Z,1443515234.875 [PitchRateCalculator] Loaded
2015-09-29T08:27:14.875Z,1443515234.875 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T08:27:14.887Z,1443515234.887 [SpeedCalculator] Loaded
2015-09-29T08:27:14.887Z,1443515234.887 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T08:27:14.909Z,1443515234.909 [TempGradientCalculator] Loaded
2015-09-29T08:27:14.909Z,1443515234.909 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T08:27:14.927Z,1443515234.927 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T08:27:14.927Z,1443515234.927 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T08:27:14.932Z,1443515234.932 [YawRateCalculator] Loaded
2015-09-29T08:27:14.933Z,1443515234.933 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T08:27:14.933Z,1443515234.933 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T08:27:14.934Z,1443515234.934 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T08:27:15.059Z,1443515235.059 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T08:27:15.059Z,1443515235.059 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T08:27:15.060Z,1443515235.060 [StratificationFrontDetector] Loaded
2015-09-29T08:27:15.060Z,1443515235.060 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T08:27:15.061Z,1443515235.061 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T08:27:15.061Z,1443515235.061 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T08:27:15.338Z,1443515235.338 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T08:27:15.339Z,1443515235.339 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T08:27:15.469Z,1443515235.469 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T08:27:15.470Z,1443515235.470 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T08:27:15.535Z,1443515235.535 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T08:27:15.535Z,1443515235.535 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T08:27:15.553Z,1443515235.553 [NavChart] Loaded
2015-09-29T08:27:15.553Z,1443515235.553 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T08:27:15.559Z,1443515235.559 [UniversalFixResidualReporter] Loaded
2015-09-29T08:27:15.559Z,1443515235.559 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T08:27:15.560Z,1443515235.560 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T08:27:15.560Z,1443515235.560 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T08:27:15.569Z,1443515235.569 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T08:27:15.570Z,1443515235.570 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T08:27:15.872Z,1443515235.872 [CTD_NeilBrown] Loaded
2015-09-29T08:27:15.872Z,1443515235.872 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T08:27:15.874Z,1443515235.874 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T08:27:15.875Z,1443515235.875 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T08:27:15.888Z,1443515235.888 [ISUS] Loaded
2015-09-29T08:27:15.888Z,1443515235.888 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T08:27:15.903Z,1443515235.903 [PAR_Licor] Loaded
2015-09-29T08:27:15.903Z,1443515235.903 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T08:27:15.964Z,1443515235.964 [WetLabsBB2FL] Loaded
2015-09-29T08:27:15.964Z,1443515235.964 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T08:27:15.966Z,1443515235.966 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T08:27:15.967Z,1443515235.967 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T08:27:15.967Z,1443515235.967 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T08:27:15.968Z,1443515235.968 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T08:27:16.693Z,1443515236.693 [AHRS_sp3003D] Loaded
2015-09-29T08:27:16.694Z,1443515236.694 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T08:27:16.889Z,1443515236.889 [DataOverHttps] Loaded
2015-09-29T08:27:16.890Z,1443515236.890 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T08:27:16.903Z,1443515236.903 [Depth_Keller] Loaded
2015-09-29T08:27:16.904Z,1443515236.904 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T08:27:16.913Z,1443515236.913 [DropWeight] Loaded
2015-09-29T08:27:16.913Z,1443515236.913 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T08:27:17.066Z,1443515237.066 [DVL_micro] Loaded
2015-09-29T08:27:17.066Z,1443515237.066 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T08:27:17.175Z,1443515237.175 [NAL9602] Loaded
2015-09-29T08:27:17.175Z,1443515237.175 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T08:27:17.223Z,1443515237.223 [Onboard] Loaded
2015-09-29T08:27:17.223Z,1443515237.223 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T08:27:17.235Z,1443515237.235 [Radio_Surface] Loaded
2015-09-29T08:27:17.235Z,1443515237.235 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T08:27:17.238Z,1443515237.238 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T08:27:17.239Z,1443515237.239 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T08:27:17.400Z,1443515237.400 [DAT] Loaded
2015-09-29T08:27:17.400Z,1443515237.400 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T08:27:17.407Z,1443515237.407 [SCPI] Loaded
2015-09-29T08:27:17.408Z,1443515237.408 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T08:27:17.408Z,1443515237.408 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T08:27:17.409Z,1443515237.409 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T08:27:17.543Z,1443515237.543 [BuoyancyServo] Loaded
2015-09-29T08:27:17.543Z,1443515237.543 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T08:27:17.556Z,1443515237.556 [ElevatorServo] Loaded
2015-09-29T08:27:17.557Z,1443515237.557 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T08:27:17.569Z,1443515237.569 [MassServo] Loaded
2015-09-29T08:27:17.569Z,1443515237.569 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T08:27:17.581Z,1443515237.581 [RudderServo] Loaded
2015-09-29T08:27:17.582Z,1443515237.582 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T08:27:17.598Z,1443515237.598 [ThrusterServo] Loaded
2015-09-29T08:27:17.598Z,1443515237.598 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T08:27:17.598Z,1443515237.598 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T08:27:17.599Z,1443515237.599 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T08:27:17.799Z,1443515237.799 [InternalSim] Loaded
2015-09-29T08:27:17.799Z,1443515237.799 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T08:27:17.800Z,1443515237.800 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T08:27:17.800Z,1443515237.800 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T08:27:17.844Z,1443515237.844 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T08:27:17.848Z,1443515237.848 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T08:27:17.849Z,1443515237.849 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T08:27:17.860Z,1443515237.860 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T08:27:17.862Z,1443515237.862 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T08:27:17.863Z,1443515237.863 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T08:27:17.868Z,1443515237.868 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T08:27:17.868Z,1443515237.868 [Supervisor](DEBUG): Running supervisor.
2015-09-29T08:27:17.869Z,1443515237.869 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T08:27:17.875Z,1443515237.875 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T08:27:17.875Z,1443515237.875 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T08:27:17.876Z,1443515237.876 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T08:27:17.878Z,1443515237.878 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T08:27:17.879Z,1443515237.879 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T08:27:17.879Z,1443515237.879 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T08:27:17.880Z,1443515237.880 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T08:27:17.880Z,1443515237.880 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T08:27:17.882Z,1443515237.882 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T08:27:17.882Z,1443515237.882 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T08:27:17.883Z,1443515237.883 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T08:27:17.883Z,1443515237.883 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T08:27:17.884Z,1443515237.884 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T08:27:17.884Z,1443515237.884 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T08:27:17.885Z,1443515237.885 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T08:27:17.885Z,1443515237.885 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T08:27:17.885Z,1443515237.885 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T08:27:17.886Z,1443515237.886 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T08:27:17.886Z,1443515237.886 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T08:27:17.886Z,1443515237.886 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T08:27:17.887Z,1443515237.887 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T08:27:17.888Z,1443515237.888 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T08:27:17.888Z,1443515237.888 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T08:27:17.889Z,1443515237.889 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T08:27:17.889Z,1443515237.889 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T08:27:17.890Z,1443515237.890 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T08:27:17.890Z,1443515237.890 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T08:27:17.890Z,1443515237.890 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T08:27:17.891Z,1443515237.891 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T08:27:17.896Z,1443515237.896 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T08:27:17.931Z,1443515237.931 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T08:27:17.981Z,1443515237.981 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T08:27:17.987Z,1443515237.987 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T08:27:18.027Z,1443515238.027 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T08:27:18.037Z,1443515238.037 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T08:27:18.055Z,1443515238.055 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T08:27:18.069Z,1443515238.069 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T08:27:18.087Z,1443515238.087 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T08:27:18.097Z,1443515238.097 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T08:27:18.097Z,1443515238.097 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T08:27:18.097Z,1443515238.097 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T08:27:18.097Z,1443515238.097 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T08:27:18.098Z,1443515238.098 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T08:27:18.098Z,1443515238.098 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T08:27:18.098Z,1443515238.098 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T08:27:18.106Z,1443515238.106 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T08:27:18.118Z,1443515238.118 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T08:27:18.120Z,1443515238.120 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T08:27:18.194Z,1443515238.194 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T08:27:18.211Z,1443515238.211 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T08:27:18.255Z,1443515238.255 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T08:27:18.258Z,1443515238.258 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T08:27:18.280Z,1443515238.280 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T08:27:18.319Z,1443515238.319 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T08:27:18.325Z,1443515238.325 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T08:27:18.554Z,1443515238.554 [DVL_micro](INFO): Initializing
2015-09-29T08:27:18.739Z,1443515238.739 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:27:18.751Z,1443515238.751 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:27:18.863Z,1443515238.863 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T08:27:18.871Z,1443515238.871 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T08:27:18.894Z,1443515238.894 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T08:27:18.900Z,1443515238.900 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T08:27:18.914Z,1443515238.914 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T08:27:19.149Z,1443515239.149 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:27:19.166Z,1443515239.166 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:27:28.153Z,1443515248.153 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:27:28.500Z,1443515248.500 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:27:28.637Z,1443515248.637 [DAT](ERROR): Could not read simulated DAT measurements from SimS