2015-09-29T08:11:17.819Z,1443514277.819 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T08:11:17.822Z,1443514277.822 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T08:11:17.823Z,1443514277.823 [SyncHandler](INFO): Protected caller Thread ID is 762
2015-09-29T08:11:17.823Z,1443514277.823 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T08:11:17.826Z,1443514277.826 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T08:11:17.826Z,1443514277.826 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T08:11:17.829Z,1443514277.829 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T08:11:17.841Z,1443514277.841 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T08:11:17.846Z,1443514277.846 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T08:11:17.846Z,1443514277.846 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T08:11:17.847Z,1443514277.847 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T08:11:17.850Z,1443514277.850 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T08:11:17.850Z,1443514277.850 [logger ThreadHandler](INFO): Protected caller Thread ID is 765
2015-09-29T08:11:17.853Z,1443514277.853 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T08:11:17.853Z,1443514277.853 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T08:11:17.857Z,1443514277.857 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T08:11:18.247Z,1443514278.247 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T08:11:18.250Z,1443514278.250 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T08:11:18.443Z,1443514278.443 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T08:11:18.445Z,1443514278.445 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T08:11:18.591Z,1443514278.591 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T08:11:18.591Z,1443514278.591 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T08:11:18.739Z,1443514278.739 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T08:11:18.740Z,1443514278.740 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T08:11:18.838Z,1443514278.838 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T08:11:19.059Z,1443514279.059 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T08:11:19.060Z,1443514279.060 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T08:11:19.155Z,1443514279.155 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T08:11:19.155Z,1443514279.155 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T08:11:19.472Z,1443514279.472 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T08:11:19.473Z,1443514279.473 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T08:11:19.871Z,1443514279.871 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T08:11:19.872Z,1443514279.872 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T08:11:20.223Z,1443514280.223 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T08:11:20.225Z,1443514280.225 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T08:11:20.820Z,1443514280.820 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T08:11:20.820Z,1443514280.820 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T08:11:21.051Z,1443514281.051 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T08:11:21.052Z,1443514281.052 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T08:11:21.171Z,1443514281.171 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T08:11:21.171Z,1443514281.171 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T08:11:21.687Z,1443514281.687 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T08:11:21.688Z,1443514281.688 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T08:11:21.815Z,1443514281.815 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T08:11:21.817Z,1443514281.817 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T08:11:21.817Z,1443514281.817 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T08:11:21.821Z,1443514281.821 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T08:11:21.895Z,1443514281.895 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T08:11:22.029Z,1443514282.029 [VerticalControl] Loaded
2015-09-29T08:11:22.030Z,1443514282.030 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T08:11:22.030Z,1443514282.030 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T08:11:22.111Z,1443514282.111 [HorizontalControl] Loaded
2015-09-29T08:11:22.111Z,1443514282.111 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T08:11:22.112Z,1443514282.112 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T08:11:22.118Z,1443514282.118 [SpeedControl] Loaded
2015-09-29T08:11:22.118Z,1443514282.118 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T08:11:22.119Z,1443514282.119 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T08:11:22.120Z,1443514282.120 [LoopControl] Loaded
2015-09-29T08:11:22.120Z,1443514282.120 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T08:11:22.120Z,1443514282.120 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T08:11:22.121Z,1443514282.121 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T08:11:22.280Z,1443514282.280 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T08:11:22.292Z,1443514282.292 [SBIT] Loaded
2015-09-29T08:11:22.292Z,1443514282.292 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T08:11:22.293Z,1443514282.293 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T08:11:22.327Z,1443514282.327 [IBIT] Loaded
2015-09-29T08:11:22.328Z,1443514282.328 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T08:11:22.330Z,1443514282.330 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T08:11:22.485Z,1443514282.485 [CBIT] Loaded
2015-09-29T08:11:22.485Z,1443514282.485 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T08:11:22.485Z,1443514282.485 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T08:11:22.486Z,1443514282.486 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T08:11:22.527Z,1443514282.527 [DepthRateCalculator] Loaded
2015-09-29T08:11:22.528Z,1443514282.528 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T08:11:22.533Z,1443514282.533 [PitchRateCalculator] Loaded
2015-09-29T08:11:22.533Z,1443514282.533 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T08:11:22.549Z,1443514282.549 [SpeedCalculator] Loaded
2015-09-29T08:11:22.549Z,1443514282.549 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T08:11:22.567Z,1443514282.567 [TempGradientCalculator] Loaded
2015-09-29T08:11:22.567Z,1443514282.567 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T08:11:22.588Z,1443514282.588 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T08:11:22.589Z,1443514282.589 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T08:11:22.594Z,1443514282.594 [YawRateCalculator] Loaded
2015-09-29T08:11:22.594Z,1443514282.594 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T08:11:22.595Z,1443514282.595 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T08:11:22.595Z,1443514282.595 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T08:11:22.718Z,1443514282.718 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T08:11:22.718Z,1443514282.718 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T08:11:22.718Z,1443514282.718 [StratificationFrontDetector] Loaded
2015-09-29T08:11:22.719Z,1443514282.719 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T08:11:22.719Z,1443514282.719 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T08:11:22.720Z,1443514282.720 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T08:11:23.012Z,1443514283.012 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T08:11:23.013Z,1443514283.013 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T08:11:23.145Z,1443514283.145 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T08:11:23.146Z,1443514283.146 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T08:11:23.206Z,1443514283.206 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T08:11:23.206Z,1443514283.206 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T08:11:23.228Z,1443514283.228 [NavChart] Loaded
2015-09-29T08:11:23.228Z,1443514283.228 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T08:11:23.234Z,1443514283.234 [UniversalFixResidualReporter] Loaded
2015-09-29T08:11:23.234Z,1443514283.234 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T08:11:23.234Z,1443514283.234 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T08:11:23.235Z,1443514283.235 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T08:11:23.244Z,1443514283.244 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T08:11:23.244Z,1443514283.244 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T08:11:23.547Z,1443514283.547 [CTD_NeilBrown] Loaded
2015-09-29T08:11:23.548Z,1443514283.548 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T08:11:23.550Z,1443514283.550 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T08:11:23.550Z,1443514283.550 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T08:11:23.563Z,1443514283.563 [ISUS] Loaded
2015-09-29T08:11:23.564Z,1443514283.564 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T08:11:23.578Z,1443514283.578 [PAR_Licor] Loaded
2015-09-29T08:11:23.579Z,1443514283.579 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T08:11:23.638Z,1443514283.638 [WetLabsBB2FL] Loaded
2015-09-29T08:11:23.638Z,1443514283.638 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T08:11:23.642Z,1443514283.642 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T08:11:23.642Z,1443514283.642 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T08:11:23.643Z,1443514283.643 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T08:11:23.644Z,1443514283.644 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T08:11:24.369Z,1443514284.369 [AHRS_sp3003D] Loaded
2015-09-29T08:11:24.369Z,1443514284.369 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T08:11:24.570Z,1443514284.570 [DataOverHttps] Loaded
2015-09-29T08:11:24.570Z,1443514284.570 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T08:11:24.583Z,1443514284.583 [Depth_Keller] Loaded
2015-09-29T08:11:24.584Z,1443514284.584 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T08:11:24.589Z,1443514284.589 [DropWeight] Loaded
2015-09-29T08:11:24.589Z,1443514284.589 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T08:11:24.745Z,1443514284.745 [DVL_micro] Loaded
2015-09-29T08:11:24.745Z,1443514284.745 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T08:11:24.849Z,1443514284.849 [NAL9602] Loaded
2015-09-29T08:11:24.849Z,1443514284.849 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T08:11:24.900Z,1443514284.900 [Onboard] Loaded
2015-09-29T08:11:24.901Z,1443514284.901 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T08:11:24.912Z,1443514284.912 [Radio_Surface] Loaded
2015-09-29T08:11:24.913Z,1443514284.913 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T08:11:24.914Z,1443514284.914 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T08:11:24.914Z,1443514284.914 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T08:11:25.073Z,1443514285.073 [DAT] Loaded
2015-09-29T08:11:25.073Z,1443514285.073 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T08:11:25.080Z,1443514285.080 [SCPI] Loaded
2015-09-29T08:11:25.080Z,1443514285.080 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T08:11:25.081Z,1443514285.081 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T08:11:25.082Z,1443514285.082 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T08:11:25.219Z,1443514285.219 [BuoyancyServo] Loaded
2015-09-29T08:11:25.219Z,1443514285.219 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T08:11:25.232Z,1443514285.232 [ElevatorServo] Loaded
2015-09-29T08:11:25.232Z,1443514285.232 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T08:11:25.244Z,1443514285.244 [MassServo] Loaded
2015-09-29T08:11:25.244Z,1443514285.244 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T08:11:25.261Z,1443514285.261 [RudderServo] Loaded
2015-09-29T08:11:25.261Z,1443514285.261 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T08:11:25.272Z,1443514285.272 [ThrusterServo] Loaded
2015-09-29T08:11:25.273Z,1443514285.273 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T08:11:25.273Z,1443514285.273 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T08:11:25.274Z,1443514285.274 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T08:11:25.472Z,1443514285.472 [InternalSim] Loaded
2015-09-29T08:11:25.472Z,1443514285.472 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T08:11:25.472Z,1443514285.472 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T08:11:25.473Z,1443514285.473 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T08:11:25.517Z,1443514285.517 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T08:11:25.521Z,1443514285.521 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T08:11:25.522Z,1443514285.522 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T08:11:25.529Z,1443514285.529 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T08:11:25.534Z,1443514285.534 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T08:11:25.534Z,1443514285.534 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 814
2015-09-29T08:11:25.539Z,1443514285.539 [Supervisor](INFO): Main Thread ID is 761
2015-09-29T08:11:25.539Z,1443514285.539 [Supervisor](DEBUG): Running supervisor.
2015-09-29T08:11:25.540Z,1443514285.540 [CommandLine ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T08:11:25.546Z,1443514285.546 [controlThread ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T08:11:25.547Z,1443514285.547 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T08:11:25.548Z,1443514285.548 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T08:11:25.550Z,1443514285.550 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T08:11:25.550Z,1443514285.550 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T08:11:25.551Z,1443514285.551 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T08:11:25.551Z,1443514285.551 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T08:11:25.552Z,1443514285.552 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T08:11:25.553Z,1443514285.553 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T08:11:25.554Z,1443514285.554 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T08:11:25.555Z,1443514285.555 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T08:11:25.555Z,1443514285.555 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T08:11:25.556Z,1443514285.556 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T08:11:25.556Z,1443514285.556 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T08:11:25.556Z,1443514285.556 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T08:11:25.557Z,1443514285.557 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T08:11:25.557Z,1443514285.557 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T08:11:25.557Z,1443514285.557 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T08:11:25.558Z,1443514285.558 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T08:11:25.558Z,1443514285.558 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T08:11:25.559Z,1443514285.559 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T08:11:25.559Z,1443514285.559 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T08:11:25.560Z,1443514285.560 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T08:11:25.560Z,1443514285.560 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T08:11:25.561Z,1443514285.561 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T08:11:25.561Z,1443514285.561 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T08:11:25.562Z,1443514285.562 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T08:11:25.562Z,1443514285.562 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T08:11:25.562Z,1443514285.562 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T08:11:25.568Z,1443514285.568 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T08:11:25.591Z,1443514285.591 [logger ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T08:11:25.630Z,1443514285.630 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T08:11:25.692Z,1443514285.692 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T08:11:25.743Z,1443514285.743 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T08:11:25.759Z,1443514285.759 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T08:11:25.779Z,1443514285.779 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T08:11:25.828Z,1443514285.828 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T08:11:25.862Z,1443514285.862 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T08:11:25.863Z,1443514285.863 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T08:11:25.863Z,1443514285.863 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T08:11:25.863Z,1443514285.863 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T08:11:25.863Z,1443514285.863 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T08:11:25.864Z,1443514285.864 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T08:11:25.864Z,1443514285.864 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T08:11:25.864Z,1443514285.864 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T08:11:25.929Z,1443514285.929 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T08:11:25.963Z,1443514285.963 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T08:11:25.964Z,1443514285.964 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T08:11:25.997Z,1443514285.997 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T08:11:26.015Z,1443514286.015 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T08:11:26.041Z,1443514286.041 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T08:11:26.056Z,1443514286.056 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T08:11:26.078Z,1443514286.078 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T08:11:26.082Z,1443514286.082 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T08:11:26.095Z,1443514286.095 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T08:11:26.318Z,1443514286.318 [DVL_micro](INFO): Initializing
2015-09-29T08:11:26.474Z,1443514286.474 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:11:26.482Z,1443514286.482 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:11:26.606Z,1443514286.606 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T08:11:26.617Z,1443514286.617 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T08:11:26.634Z,1443514286.634 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T08:11:26.652Z,1443514286.652 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T08:11:26.669Z,1443514286.669 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T08:11:26.927Z,1443514286.927 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:11:26.928Z,1443514286.928 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T08:11:36.050Z,1443514296.050 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:36.386Z,1443514296.386 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:36.525Z,1443514296.525 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:36.925Z,1443514296.925 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T08:11:36.929Z,1443514296.929 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:37.323Z,1443514297.323 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:37.723Z,1443514297.723 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:38.123Z,1443514298.123 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:38.523Z,1443514298.523 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:38.924Z,1443514298.924 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:39.323Z,1443514299.323 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:39.723Z,1443514299.723 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:40.123Z,1443514300.123 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:40.523Z,1443514300.523 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:40.923Z,1443514300.923 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:41.322Z,1443514301.322 [NAL9602](INFO): No messages in MT queue
2015-09-29T08:11:41.323Z,1443514301.323 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:41.723Z,1443514301.723 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:42.123Z,1443514302.123 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:42.522Z,1443514302.522 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:42.923Z,1443514302.923 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:43.323Z,1443514303.323 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:43.722Z,1443514303.722 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:44.122Z,1443514304.122 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:44.523Z,1443514304.523 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:44.923Z,1443514304.923 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:45.323Z,1443514305.323 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:45.722Z,1443514305.722 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:46.122Z,1443514306.122 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:46.137Z,1443514306.137 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T08:11:46.522Z,1443514306.522 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:46.922Z,1443514306.922 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:47.324Z,1443514307.324 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:47.723Z,1443514307.723 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:48.123Z,1443514308.123 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:48.523Z,1443514308.523 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:48.924Z,1443514308.924 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:49.323Z,1443514309.323 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:49.724Z,1443514309.724 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:50.123Z,1443514310.123 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T08:11:50.523Z,1443514310.523 [D