2015-09-29T07:55:25.397Z,1443513325.397 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T07:55:25.402Z,1443513325.402 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T07:55:25.402Z,1443513325.402 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T07:55:25.403Z,1443513325.403 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T07:55:25.406Z,1443513325.406 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T07:55:25.406Z,1443513325.406 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T07:55:25.409Z,1443513325.409 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T07:55:25.421Z,1443513325.421 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T07:55:25.426Z,1443513325.426 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T07:55:25.426Z,1443513325.426 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T07:55:25.427Z,1443513325.427 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T07:55:25.430Z,1443513325.430 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T07:55:25.430Z,1443513325.430 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T07:55:25.432Z,1443513325.432 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T07:55:25.432Z,1443513325.432 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T07:55:25.436Z,1443513325.436 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T07:55:25.823Z,1443513325.823 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T07:55:25.825Z,1443513325.825 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T07:55:26.018Z,1443513326.018 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T07:55:26.019Z,1443513326.019 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T07:55:26.162Z,1443513326.162 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T07:55:26.163Z,1443513326.163 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T07:55:26.310Z,1443513326.310 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T07:55:26.311Z,1443513326.311 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T07:55:26.405Z,1443513326.405 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T07:55:26.626Z,1443513326.626 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T07:55:26.627Z,1443513326.627 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T07:55:26.722Z,1443513326.722 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T07:55:26.723Z,1443513326.723 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T07:55:27.038Z,1443513327.038 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T07:55:27.039Z,1443513327.039 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T07:55:27.439Z,1443513327.439 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T07:55:27.440Z,1443513327.440 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T07:55:27.791Z,1443513327.791 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T07:55:27.793Z,1443513327.793 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T07:55:28.388Z,1443513328.388 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T07:55:28.389Z,1443513328.389 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T07:55:28.619Z,1443513328.619 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T07:55:28.619Z,1443513328.619 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T07:55:28.739Z,1443513328.739 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T07:55:28.740Z,1443513328.740 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T07:55:29.254Z,1443513329.254 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T07:55:29.255Z,1443513329.255 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T07:55:29.422Z,1443513329.422 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T07:55:29.424Z,1443513329.424 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T07:55:29.424Z,1443513329.424 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T07:55:29.429Z,1443513329.429 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T07:55:29.503Z,1443513329.503 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T07:55:29.636Z,1443513329.636 [VerticalControl] Loaded
2015-09-29T07:55:29.636Z,1443513329.636 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T07:55:29.637Z,1443513329.637 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T07:55:29.717Z,1443513329.717 [HorizontalControl] Loaded
2015-09-29T07:55:29.717Z,1443513329.717 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T07:55:29.718Z,1443513329.718 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T07:55:29.724Z,1443513329.724 [SpeedControl] Loaded
2015-09-29T07:55:29.724Z,1443513329.724 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T07:55:29.725Z,1443513329.725 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T07:55:29.725Z,1443513329.725 [LoopControl] Loaded
2015-09-29T07:55:29.726Z,1443513329.726 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T07:55:29.726Z,1443513329.726 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T07:55:29.727Z,1443513329.727 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T07:55:29.888Z,1443513329.888 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T07:55:29.900Z,1443513329.900 [SBIT] Loaded
2015-09-29T07:55:29.901Z,1443513329.901 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T07:55:29.901Z,1443513329.901 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T07:55:29.935Z,1443513329.935 [IBIT] Loaded
2015-09-29T07:55:29.935Z,1443513329.935 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T07:55:29.937Z,1443513329.937 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T07:55:30.091Z,1443513330.091 [CBIT] Loaded
2015-09-29T07:55:30.091Z,1443513330.091 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T07:55:30.092Z,1443513330.092 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T07:55:30.093Z,1443513330.093 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T07:55:30.133Z,1443513330.133 [DepthRateCalculator] Loaded
2015-09-29T07:55:30.133Z,1443513330.133 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T07:55:30.139Z,1443513330.139 [PitchRateCalculator] Loaded
2015-09-29T07:55:30.139Z,1443513330.139 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T07:55:30.151Z,1443513330.151 [SpeedCalculator] Loaded
2015-09-29T07:55:30.151Z,1443513330.151 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T07:55:30.172Z,1443513330.172 [TempGradientCalculator] Loaded
2015-09-29T07:55:30.173Z,1443513330.173 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T07:55:30.190Z,1443513330.190 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T07:55:30.190Z,1443513330.190 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T07:55:30.195Z,1443513330.195 [YawRateCalculator] Loaded
2015-09-29T07:55:30.196Z,1443513330.196 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T07:55:30.196Z,1443513330.196 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T07:55:30.197Z,1443513330.197 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T07:55:30.321Z,1443513330.321 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T07:55:30.321Z,1443513330.321 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T07:55:30.321Z,1443513330.321 [StratificationFrontDetector] Loaded
2015-09-29T07:55:30.322Z,1443513330.322 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T07:55:30.322Z,1443513330.322 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T07:55:30.323Z,1443513330.323 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T07:55:30.612Z,1443513330.612 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T07:55:30.613Z,1443513330.613 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T07:55:30.748Z,1443513330.748 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T07:55:30.748Z,1443513330.748 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T07:55:30.808Z,1443513330.808 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T07:55:30.808Z,1443513330.808 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T07:55:30.830Z,1443513330.830 [NavChart] Loaded
2015-09-29T07:55:30.830Z,1443513330.830 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T07:55:30.836Z,1443513330.836 [UniversalFixResidualReporter] Loaded
2015-09-29T07:55:30.836Z,1443513330.836 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T07:55:30.836Z,1443513330.836 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T07:55:30.837Z,1443513330.837 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T07:55:30.846Z,1443513330.846 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T07:55:30.846Z,1443513330.846 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T07:55:31.150Z,1443513331.150 [CTD_NeilBrown] Loaded
2015-09-29T07:55:31.151Z,1443513331.151 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T07:55:31.154Z,1443513331.154 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T07:55:31.154Z,1443513331.154 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T07:55:31.167Z,1443513331.167 [ISUS] Loaded
2015-09-29T07:55:31.167Z,1443513331.167 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T07:55:31.186Z,1443513331.186 [PAR_Licor] Loaded
2015-09-29T07:55:31.186Z,1443513331.186 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T07:55:31.241Z,1443513331.241 [WetLabsBB2FL] Loaded
2015-09-29T07:55:31.242Z,1443513331.242 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T07:55:31.246Z,1443513331.246 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T07:55:31.246Z,1443513331.246 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T07:55:31.246Z,1443513331.246 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T07:55:31.247Z,1443513331.247 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T07:55:31.968Z,1443513331.968 [AHRS_sp3003D] Loaded
2015-09-29T07:55:31.969Z,1443513331.969 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T07:55:32.163Z,1443513332.163 [DataOverHttps] Loaded
2015-09-29T07:55:32.163Z,1443513332.163 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T07:55:32.177Z,1443513332.177 [Depth_Keller] Loaded
2015-09-29T07:55:32.177Z,1443513332.177 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T07:55:32.186Z,1443513332.186 [DropWeight] Loaded
2015-09-29T07:55:32.186Z,1443513332.186 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T07:55:32.339Z,1443513332.339 [DVL_micro] Loaded
2015-09-29T07:55:32.339Z,1443513332.339 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T07:55:32.451Z,1443513332.451 [NAL9602] Loaded
2015-09-29T07:55:32.452Z,1443513332.452 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T07:55:32.498Z,1443513332.498 [Onboard] Loaded
2015-09-29T07:55:32.499Z,1443513332.499 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T07:55:32.510Z,1443513332.510 [Radio_Surface] Loaded
2015-09-29T07:55:32.511Z,1443513332.511 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T07:55:32.514Z,1443513332.514 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T07:55:32.514Z,1443513332.514 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T07:55:32.672Z,1443513332.672 [DAT] Loaded
2015-09-29T07:55:32.672Z,1443513332.672 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T07:55:32.679Z,1443513332.679 [SCPI] Loaded
2015-09-29T07:55:32.680Z,1443513332.680 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T07:55:32.680Z,1443513332.680 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T07:55:32.681Z,1443513332.681 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T07:55:32.812Z,1443513332.812 [BuoyancyServo] Loaded
2015-09-29T07:55:32.812Z,1443513332.812 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T07:55:32.829Z,1443513332.829 [ElevatorServo] Loaded
2015-09-29T07:55:32.829Z,1443513332.829 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T07:55:32.841Z,1443513332.841 [MassServo] Loaded
2015-09-29T07:55:32.842Z,1443513332.842 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T07:55:32.854Z,1443513332.854 [RudderServo] Loaded
2015-09-29T07:55:32.854Z,1443513332.854 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T07:55:32.869Z,1443513332.869 [ThrusterServo] Loaded
2015-09-29T07:55:32.870Z,1443513332.870 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T07:55:32.870Z,1443513332.870 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T07:55:32.871Z,1443513332.871 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T07:55:33.070Z,1443513333.070 [InternalSim] Loaded
2015-09-29T07:55:33.070Z,1443513333.070 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T07:55:33.071Z,1443513333.071 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T07:55:33.071Z,1443513333.071 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T07:55:33.114Z,1443513333.114 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T07:55:33.119Z,1443513333.119 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T07:55:33.120Z,1443513333.120 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T07:55:33.130Z,1443513333.130 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T07:55:33.134Z,1443513333.134 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T07:55:33.134Z,1443513333.134 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T07:55:33.139Z,1443513333.139 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T07:55:33.139Z,1443513333.139 [Supervisor](DEBUG): Running supervisor.
2015-09-29T07:55:33.140Z,1443513333.140 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T07:55:33.146Z,1443513333.146 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T07:55:33.146Z,1443513333.146 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T07:55:33.147Z,1443513333.147 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T07:55:33.149Z,1443513333.149 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T07:55:33.150Z,1443513333.150 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T07:55:33.151Z,1443513333.151 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T07:55:33.151Z,1443513333.151 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T07:55:33.151Z,1443513333.151 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T07:55:33.153Z,1443513333.153 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T07:55:33.153Z,1443513333.153 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T07:55:33.154Z,1443513333.154 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T07:55:33.155Z,1443513333.155 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T07:55:33.156Z,1443513333.156 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T07:55:33.156Z,1443513333.156 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T07:55:33.156Z,1443513333.156 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T07:55:33.156Z,1443513333.156 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T07:55:33.157Z,1443513333.157 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T07:55:33.157Z,1443513333.157 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T07:55:33.157Z,1443513333.157 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T07:55:33.158Z,1443513333.158 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T07:55:33.158Z,1443513333.158 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T07:55:33.159Z,1443513333.159 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T07:55:33.160Z,1443513333.160 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T07:55:33.160Z,1443513333.160 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T07:55:33.160Z,1443513333.160 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T07:55:33.161Z,1443513333.161 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T07:55:33.161Z,1443513333.161 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T07:55:33.162Z,1443513333.162 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T07:55:33.162Z,1443513333.162 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T07:55:33.167Z,1443513333.167 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T07:55:33.202Z,1443513333.202 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T07:55:33.302Z,1443513333.302 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T07:55:33.342Z,1443513333.342 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T07:55:33.357Z,1443513333.357 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T07:55:33.372Z,1443513333.372 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T07:55:33.382Z,1443513333.382 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T07:55:33.399Z,1443513333.399 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T07:55:33.402Z,1443513333.402 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T07:55:33.402Z,1443513333.402 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T07:55:33.403Z,1443513333.403 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T07:55:33.403Z,1443513333.403 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T07:55:33.403Z,1443513333.403 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T07:55:33.403Z,1443513333.403 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T07:55:33.404Z,1443513333.404 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T07:55:33.404Z,1443513333.404 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T07:55:33.475Z,1443513333.475 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T07:55:33.485Z,1443513333.485 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T07:55:33.487Z,1443513333.487 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T07:55:33.559Z,1443513333.559 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T07:55:33.560Z,1443513333.560 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T07:55:33.590Z,1443513333.590 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T07:55:33.593Z,1443513333.593 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T07:55:33.615Z,1443513333.615 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T07:55:33.618Z,1443513333.618 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T07:55:33.639Z,1443513333.639 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T07:55:33.880Z,1443513333.880 [DVL_micro](INFO): Initializing
2015-09-29T07:55:34.042Z,1443513334.042 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:55:34.066Z,1443513334.066 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:55:34.174Z,1443513334.174 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T07:55:34.200Z,1443513334.200 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T07:55:34.213Z,1443513334.213 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T07:55:34.243Z,1443513334.243 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T07:55:34.248Z,1443513334.248 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T07:55:34.493Z,1443513334.493 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:55:34.494Z,1443513334.494 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:55:43.561Z,1443513343.561 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:43.903Z,1443513343.903 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:44.033Z,1443513344.033 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:44.432Z,1443513344.432 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T07:55:44.436Z,1443513344.436 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:44.831Z,1443513344.831 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:45.231Z,1443513345.231 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:45.632Z,1443513345.632 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:46.030Z,1443513346.030 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:46.430Z,1443513346.430 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:46.831Z,1443513346.831 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:47.230Z,1443513347.230 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:47.641Z,1443513347.641 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:48.030Z,1443513348.030 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:48.440Z,1443513348.440 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:48.830Z,1443513348.830 [NAL9602](INFO): No messages in MT queue
2015-09-29T07:55:48.831Z,1443513348.831 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:49.241Z,1443513349.241 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:49.641Z,1443513349.641 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:50.041Z,1443513350.041 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:50.439Z,1443513350.439 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:50.840Z,1443513350.840 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:51.240Z,1443513351.240 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:51.640Z,1443513351.640 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:52.030Z,1443513352.030 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:52.440Z,1443513352.440 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:52.840Z,1443513352.840 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:53.240Z,1443513353.240 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:53.640Z,1443513353.640 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:53.654Z,1443513353.654 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T07:55:54.040Z,1443513354.040 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:54.440Z,1443513354.440 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:54.840Z,1443513354.840 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:55.235Z,1443513355.235 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:55.630Z,1443513355.630 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:56.030Z,1443513356.030 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:56.430Z,1443513356.430 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:56.830Z,1443513356.830 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:57.231Z,1443513357.231 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:57.632Z,1443513357.632 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:55:58.031Z,1443513358.031 [D