2015-09-29T07:47:32.478Z,1443512852.478 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T07:47:32.481Z,1443512852.481 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T07:47:32.481Z,1443512852.481 [SyncHandler](INFO): Protected caller Thread ID is 762
2015-09-29T07:47:32.482Z,1443512852.482 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T07:47:32.484Z,1443512852.484 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T07:47:32.485Z,1443512852.485 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T07:47:32.488Z,1443512852.488 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T07:47:32.501Z,1443512852.501 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T07:47:32.504Z,1443512852.504 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T07:47:32.505Z,1443512852.505 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T07:47:32.506Z,1443512852.506 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T07:47:32.508Z,1443512852.508 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T07:47:32.509Z,1443512852.509 [logger ThreadHandler](INFO): Protected caller Thread ID is 765
2015-09-29T07:47:32.511Z,1443512852.511 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T07:47:32.511Z,1443512852.511 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T07:47:32.515Z,1443512852.515 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T07:47:32.910Z,1443512852.910 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T07:47:32.912Z,1443512852.912 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T07:47:33.105Z,1443512853.105 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T07:47:33.107Z,1443512853.107 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T07:47:33.252Z,1443512853.252 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T07:47:33.253Z,1443512853.253 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T07:47:33.401Z,1443512853.401 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T07:47:33.402Z,1443512853.402 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T07:47:33.496Z,1443512853.496 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T07:47:33.717Z,1443512853.717 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T07:47:33.718Z,1443512853.718 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T07:47:33.813Z,1443512853.813 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T07:47:33.814Z,1443512853.814 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T07:47:34.130Z,1443512854.130 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T07:47:34.130Z,1443512854.130 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T07:47:34.546Z,1443512854.546 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T07:47:34.546Z,1443512854.546 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T07:47:34.901Z,1443512854.901 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T07:47:34.903Z,1443512854.903 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T07:47:35.502Z,1443512855.502 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T07:47:35.503Z,1443512855.503 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T07:47:35.734Z,1443512855.734 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T07:47:35.734Z,1443512855.734 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T07:47:35.853Z,1443512855.853 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T07:47:35.854Z,1443512855.854 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T07:47:36.380Z,1443512856.380 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T07:47:36.381Z,1443512856.381 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T07:47:36.501Z,1443512856.501 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T07:47:36.503Z,1443512856.503 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T07:47:36.504Z,1443512856.504 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T07:47:36.508Z,1443512856.508 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T07:47:36.585Z,1443512856.585 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T07:47:36.726Z,1443512856.726 [VerticalControl] Loaded
2015-09-29T07:47:36.727Z,1443512856.727 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T07:47:36.727Z,1443512856.727 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T07:47:36.807Z,1443512856.807 [HorizontalControl] Loaded
2015-09-29T07:47:36.807Z,1443512856.807 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T07:47:36.808Z,1443512856.808 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T07:47:36.818Z,1443512856.818 [SpeedControl] Loaded
2015-09-29T07:47:36.819Z,1443512856.819 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T07:47:36.819Z,1443512856.819 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T07:47:36.820Z,1443512856.820 [LoopControl] Loaded
2015-09-29T07:47:36.820Z,1443512856.820 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T07:47:36.821Z,1443512856.821 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T07:47:36.821Z,1443512856.821 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T07:47:36.985Z,1443512856.985 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T07:47:36.998Z,1443512856.998 [SBIT] Loaded
2015-09-29T07:47:36.998Z,1443512856.998 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T07:47:36.999Z,1443512856.999 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T07:47:37.033Z,1443512857.033 [IBIT] Loaded
2015-09-29T07:47:37.034Z,1443512857.034 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T07:47:37.036Z,1443512857.036 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T07:47:37.194Z,1443512857.194 [CBIT] Loaded
2015-09-29T07:47:37.194Z,1443512857.194 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T07:47:37.195Z,1443512857.195 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T07:47:37.196Z,1443512857.196 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T07:47:37.237Z,1443512857.237 [DepthRateCalculator] Loaded
2015-09-29T07:47:37.237Z,1443512857.237 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T07:47:37.243Z,1443512857.243 [PitchRateCalculator] Loaded
2015-09-29T07:47:37.243Z,1443512857.243 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T07:47:37.255Z,1443512857.255 [SpeedCalculator] Loaded
2015-09-29T07:47:37.255Z,1443512857.255 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T07:47:37.277Z,1443512857.277 [TempGradientCalculator] Loaded
2015-09-29T07:47:37.277Z,1443512857.277 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T07:47:37.295Z,1443512857.295 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T07:47:37.296Z,1443512857.296 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T07:47:37.301Z,1443512857.301 [YawRateCalculator] Loaded
2015-09-29T07:47:37.301Z,1443512857.301 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T07:47:37.302Z,1443512857.302 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T07:47:37.303Z,1443512857.303 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T07:47:37.424Z,1443512857.424 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T07:47:37.424Z,1443512857.424 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T07:47:37.425Z,1443512857.425 [StratificationFrontDetector] Loaded
2015-09-29T07:47:37.425Z,1443512857.425 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T07:47:37.425Z,1443512857.425 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T07:47:37.426Z,1443512857.426 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T07:47:37.733Z,1443512857.733 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T07:47:37.734Z,1443512857.734 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T07:47:37.870Z,1443512857.870 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T07:47:37.870Z,1443512857.870 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T07:47:37.932Z,1443512857.932 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T07:47:37.932Z,1443512857.932 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T07:47:37.954Z,1443512857.954 [NavChart] Loaded
2015-09-29T07:47:37.955Z,1443512857.955 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T07:47:37.960Z,1443512857.960 [UniversalFixResidualReporter] Loaded
2015-09-29T07:47:37.960Z,1443512857.960 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T07:47:37.961Z,1443512857.961 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T07:47:37.961Z,1443512857.961 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T07:47:37.970Z,1443512857.970 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T07:47:37.971Z,1443512857.971 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T07:47:38.280Z,1443512858.280 [CTD_NeilBrown] Loaded
2015-09-29T07:47:38.280Z,1443512858.280 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T07:47:38.288Z,1443512858.288 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T07:47:38.289Z,1443512858.289 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T07:47:38.302Z,1443512858.302 [ISUS] Loaded
2015-09-29T07:47:38.302Z,1443512858.302 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T07:47:38.321Z,1443512858.321 [PAR_Licor] Loaded
2015-09-29T07:47:38.322Z,1443512858.322 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T07:47:38.379Z,1443512858.379 [WetLabsBB2FL] Loaded
2015-09-29T07:47:38.379Z,1443512858.379 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T07:47:38.380Z,1443512858.380 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T07:47:38.381Z,1443512858.381 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T07:47:38.381Z,1443512858.381 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T07:47:38.382Z,1443512858.382 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T07:47:39.117Z,1443512859.117 [AHRS_sp3003D] Loaded
2015-09-29T07:47:39.118Z,1443512859.118 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T07:47:39.308Z,1443512859.308 [DataOverHttps] Loaded
2015-09-29T07:47:39.308Z,1443512859.308 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T07:47:39.322Z,1443512859.322 [Depth_Keller] Loaded
2015-09-29T07:47:39.322Z,1443512859.322 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T07:47:39.331Z,1443512859.331 [DropWeight] Loaded
2015-09-29T07:47:39.332Z,1443512859.332 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T07:47:39.491Z,1443512859.491 [DVL_micro] Loaded
2015-09-29T07:47:39.492Z,1443512859.492 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T07:47:39.602Z,1443512859.602 [NAL9602] Loaded
2015-09-29T07:47:39.603Z,1443512859.603 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T07:47:39.651Z,1443512859.651 [Onboard] Loaded
2015-09-29T07:47:39.651Z,1443512859.651 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T07:47:39.663Z,1443512859.663 [Radio_Surface] Loaded
2015-09-29T07:47:39.664Z,1443512859.664 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T07:47:39.668Z,1443512859.668 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T07:47:39.669Z,1443512859.669 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T07:47:39.832Z,1443512859.832 [DAT] Loaded
2015-09-29T07:47:39.832Z,1443512859.832 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T07:47:39.839Z,1443512859.839 [SCPI] Loaded
2015-09-29T07:47:39.839Z,1443512859.839 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T07:47:39.840Z,1443512859.840 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T07:47:39.841Z,1443512859.841 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T07:47:39.978Z,1443512859.978 [BuoyancyServo] Loaded
2015-09-29T07:47:39.978Z,1443512859.978 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T07:47:39.992Z,1443512859.992 [ElevatorServo] Loaded
2015-09-29T07:47:39.992Z,1443512859.992 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T07:47:40.004Z,1443512860.004 [MassServo] Loaded
2015-09-29T07:47:40.004Z,1443512860.004 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T07:47:40.020Z,1443512860.020 [RudderServo] Loaded
2015-09-29T07:47:40.021Z,1443512860.021 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T07:47:40.032Z,1443512860.032 [ThrusterServo] Loaded
2015-09-29T07:47:40.033Z,1443512860.033 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T07:47:40.033Z,1443512860.033 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T07:47:40.034Z,1443512860.034 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T07:47:40.239Z,1443512860.239 [InternalSim] Loaded
2015-09-29T07:47:40.239Z,1443512860.239 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T07:47:40.240Z,1443512860.240 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T07:47:40.240Z,1443512860.240 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T07:47:40.284Z,1443512860.284 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T07:47:40.288Z,1443512860.288 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T07:47:40.289Z,1443512860.289 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T07:47:40.296Z,1443512860.296 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T07:47:40.300Z,1443512860.300 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T07:47:40.301Z,1443512860.301 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 814
2015-09-29T07:47:40.306Z,1443512860.306 [Supervisor](INFO): Main Thread ID is 761
2015-09-29T07:47:40.306Z,1443512860.306 [Supervisor](DEBUG): Running supervisor.
2015-09-29T07:47:40.306Z,1443512860.306 [CommandLine ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T07:47:40.313Z,1443512860.313 [controlThread ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T07:47:40.313Z,1443512860.313 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T07:47:40.314Z,1443512860.314 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T07:47:40.316Z,1443512860.316 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T07:47:40.317Z,1443512860.317 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T07:47:40.317Z,1443512860.317 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T07:47:40.318Z,1443512860.318 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T07:47:40.318Z,1443512860.318 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T07:47:40.320Z,1443512860.320 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T07:47:40.320Z,1443512860.320 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T07:47:40.321Z,1443512860.321 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T07:47:40.321Z,1443512860.321 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T07:47:40.322Z,1443512860.322 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T07:47:40.323Z,1443512860.323 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T07:47:40.323Z,1443512860.323 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T07:47:40.323Z,1443512860.323 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T07:47:40.323Z,1443512860.323 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T07:47:40.324Z,1443512860.324 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T07:47:40.324Z,1443512860.324 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T07:47:40.325Z,1443512860.325 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T07:47:40.325Z,1443512860.325 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T07:47:40.326Z,1443512860.326 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T07:47:40.326Z,1443512860.326 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T07:47:40.327Z,1443512860.327 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T07:47:40.327Z,1443512860.327 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T07:47:40.328Z,1443512860.328 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T07:47:40.328Z,1443512860.328 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T07:47:40.328Z,1443512860.328 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T07:47:40.329Z,1443512860.329 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T07:47:40.334Z,1443512860.334 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T07:47:40.357Z,1443512860.357 [logger ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T07:47:40.397Z,1443512860.397 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T07:47:40.473Z,1443512860.473 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T07:47:40.535Z,1443512860.535 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T07:47:40.552Z,1443512860.552 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T07:47:40.564Z,1443512860.564 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T07:47:40.587Z,1443512860.587 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T07:47:40.596Z,1443512860.596 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T07:47:40.598Z,1443512860.598 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T07:47:40.598Z,1443512860.598 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T07:47:40.599Z,1443512860.599 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T07:47:40.599Z,1443512860.599 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T07:47:40.599Z,1443512860.599 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T07:47:40.599Z,1443512860.599 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T07:47:40.600Z,1443512860.600 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T07:47:40.600Z,1443512860.600 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T07:47:40.661Z,1443512860.661 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T07:47:40.662Z,1443512860.662 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T07:47:40.724Z,1443512860.724 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T07:47:40.725Z,1443512860.725 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T07:47:40.761Z,1443512860.761 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T07:47:40.764Z,1443512860.764 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T07:47:40.791Z,1443512860.791 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T07:47:40.794Z,1443512860.794 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T07:47:40.806Z,1443512860.806 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T07:47:41.025Z,1443512861.025 [DVL_micro](INFO): Initializing
2015-09-29T07:47:41.181Z,1443512861.181 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:47:41.197Z,1443512861.197 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:47:41.293Z,1443512861.293 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T07:47:41.304Z,1443512861.304 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T07:47:41.322Z,1443512861.322 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T07:47:41.329Z,1443512861.329 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T07:47:41.349Z,1443512861.349 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T07:47:41.609Z,1443512861.609 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:47:41.610Z,1443512861.610 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:47:50.680Z,1443512870.680 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:51.007Z,1443512871.007 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:51.143Z,1443512871.143 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:51.543Z,1443512871.543 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T07:47:51.547Z,1443512871.547 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:51.941Z,1443512871.941 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:52.342Z,1443512872.342 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:52.742Z,1443512872.742 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:53.142Z,1443512873.142 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:53.541Z,1443512873.541 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:53.941Z,1443512873.941 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:54.340Z,1443512874.340 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:54.741Z,1443512874.741 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:55.141Z,1443512875.141 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:55.552Z,1443512875.552 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:55.940Z,1443512875.940 [NAL9602](INFO): No messages in MT queue
2015-09-29T07:47:55.941Z,1443512875.941 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:56.341Z,1443512876.341 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:56.741Z,1443512876.741 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:57.141Z,1443512877.141 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:57.541Z,1443512877.541 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:57.942Z,1443512877.942 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:58.341Z,1443512878.341 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:58.742Z,1443512878.742 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:59.141Z,1443512879.141 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:59.545Z,1443512879.545 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:47:59.941Z,1443512879.941 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:00.350Z,1443512880.350 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:00.742Z,1443512880.742 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:00.758Z,1443512880.758 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T07:48:01.142Z,1443512881.142 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:01.547Z,1443512881.547 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:01.947Z,1443512881.947 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:02.346Z,1443512882.346 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:02.742Z,1443512882.742 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:03.155Z,1443512883.155 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:03.541Z,1443512883.541 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:03.941Z,1443512883.941 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:04.356Z,1443512884.356 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:04.741Z,1443512884.741 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:48:05.142Z,1443512885.142 [D