2015-09-29T07:07:59.332Z,1443510479.332 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T07:07:59.335Z,1443510479.335 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T07:07:59.336Z,1443510479.336 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T07:07:59.336Z,1443510479.336 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T07:07:59.339Z,1443510479.339 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T07:07:59.340Z,1443510479.340 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T07:07:59.342Z,1443510479.342 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T07:07:59.355Z,1443510479.355 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T07:07:59.359Z,1443510479.359 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T07:07:59.360Z,1443510479.360 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T07:07:59.361Z,1443510479.361 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T07:07:59.363Z,1443510479.363 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T07:07:59.364Z,1443510479.364 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T07:07:59.366Z,1443510479.366 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T07:07:59.366Z,1443510479.366 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T07:07:59.370Z,1443510479.370 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T07:07:59.775Z,1443510479.775 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T07:07:59.777Z,1443510479.777 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T07:07:59.968Z,1443510479.968 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T07:07:59.970Z,1443510479.970 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T07:08:00.116Z,1443510480.116 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T07:08:00.117Z,1443510480.117 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T07:08:00.268Z,1443510480.268 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T07:08:00.269Z,1443510480.269 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T07:08:00.365Z,1443510480.365 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T07:08:00.592Z,1443510480.592 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T07:08:00.593Z,1443510480.593 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T07:08:00.688Z,1443510480.688 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T07:08:00.689Z,1443510480.689 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T07:08:01.007Z,1443510481.007 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T07:08:01.007Z,1443510481.007 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T07:08:01.408Z,1443510481.408 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T07:08:01.409Z,1443510481.409 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T07:08:01.780Z,1443510481.780 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T07:08:01.782Z,1443510481.782 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T07:08:02.385Z,1443510482.385 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T07:08:02.386Z,1443510482.386 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T07:08:02.625Z,1443510482.625 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T07:08:02.626Z,1443510482.626 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T07:08:02.743Z,1443510482.743 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T07:08:02.743Z,1443510482.743 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T07:08:03.308Z,1443510483.308 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T07:08:03.309Z,1443510483.309 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T07:08:03.439Z,1443510483.439 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T07:08:03.441Z,1443510483.441 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T07:08:03.441Z,1443510483.441 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T07:08:03.446Z,1443510483.446 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T07:08:03.520Z,1443510483.520 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T07:08:03.654Z,1443510483.654 [VerticalControl] Loaded
2015-09-29T07:08:03.654Z,1443510483.654 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T07:08:03.655Z,1443510483.655 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T07:08:03.736Z,1443510483.736 [HorizontalControl] Loaded
2015-09-29T07:08:03.736Z,1443510483.736 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T07:08:03.737Z,1443510483.737 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T07:08:03.747Z,1443510483.747 [SpeedControl] Loaded
2015-09-29T07:08:03.747Z,1443510483.747 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T07:08:03.748Z,1443510483.748 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T07:08:03.748Z,1443510483.748 [LoopControl] Loaded
2015-09-29T07:08:03.749Z,1443510483.749 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T07:08:03.749Z,1443510483.749 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T07:08:03.750Z,1443510483.750 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T07:08:03.910Z,1443510483.910 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T07:08:03.923Z,1443510483.923 [SBIT] Loaded
2015-09-29T07:08:03.923Z,1443510483.923 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T07:08:03.928Z,1443510483.928 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T07:08:03.957Z,1443510483.957 [IBIT] Loaded
2015-09-29T07:08:03.958Z,1443510483.958 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T07:08:03.960Z,1443510483.960 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T07:08:04.115Z,1443510484.115 [CBIT] Loaded
2015-09-29T07:08:04.115Z,1443510484.115 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T07:08:04.116Z,1443510484.116 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T07:08:04.116Z,1443510484.116 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T07:08:04.158Z,1443510484.158 [DepthRateCalculator] Loaded
2015-09-29T07:08:04.158Z,1443510484.158 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T07:08:04.164Z,1443510484.164 [PitchRateCalculator] Loaded
2015-09-29T07:08:04.164Z,1443510484.164 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T07:08:04.175Z,1443510484.175 [SpeedCalculator] Loaded
2015-09-29T07:08:04.176Z,1443510484.176 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T07:08:04.197Z,1443510484.197 [TempGradientCalculator] Loaded
2015-09-29T07:08:04.197Z,1443510484.197 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T07:08:04.214Z,1443510484.214 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T07:08:04.215Z,1443510484.215 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T07:08:04.220Z,1443510484.220 [YawRateCalculator] Loaded
2015-09-29T07:08:04.220Z,1443510484.220 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T07:08:04.221Z,1443510484.221 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T07:08:04.222Z,1443510484.222 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T07:08:04.341Z,1443510484.341 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T07:08:04.341Z,1443510484.341 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T07:08:04.341Z,1443510484.341 [StratificationFrontDetector] Loaded
2015-09-29T07:08:04.341Z,1443510484.341 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T07:08:04.342Z,1443510484.342 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T07:08:04.342Z,1443510484.342 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T07:08:04.640Z,1443510484.640 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T07:08:04.640Z,1443510484.640 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T07:08:04.773Z,1443510484.773 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T07:08:04.774Z,1443510484.774 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T07:08:04.835Z,1443510484.835 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T07:08:04.835Z,1443510484.835 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T07:08:04.857Z,1443510484.857 [NavChart] Loaded
2015-09-29T07:08:04.857Z,1443510484.857 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T07:08:04.862Z,1443510484.862 [UniversalFixResidualReporter] Loaded
2015-09-29T07:08:04.863Z,1443510484.863 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T07:08:04.863Z,1443510484.863 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T07:08:04.864Z,1443510484.864 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T07:08:04.872Z,1443510484.872 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T07:08:04.873Z,1443510484.873 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T07:08:05.176Z,1443510485.176 [CTD_NeilBrown] Loaded
2015-09-29T07:08:05.177Z,1443510485.177 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T07:08:05.179Z,1443510485.179 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T07:08:05.180Z,1443510485.180 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T07:08:05.193Z,1443510485.193 [ISUS] Loaded
2015-09-29T07:08:05.193Z,1443510485.193 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T07:08:05.208Z,1443510485.208 [PAR_Licor] Loaded
2015-09-29T07:08:05.208Z,1443510485.208 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T07:08:05.268Z,1443510485.268 [WetLabsBB2FL] Loaded
2015-09-29T07:08:05.268Z,1443510485.268 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T07:08:05.271Z,1443510485.271 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T07:08:05.272Z,1443510485.272 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T07:08:05.272Z,1443510485.272 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T07:08:05.273Z,1443510485.273 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T07:08:05.994Z,1443510485.994 [AHRS_sp3003D] Loaded
2015-09-29T07:08:05.994Z,1443510485.994 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T07:08:06.196Z,1443510486.196 [DataOverHttps] Loaded
2015-09-29T07:08:06.196Z,1443510486.196 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T07:08:06.214Z,1443510486.214 [Depth_Keller] Loaded
2015-09-29T07:08:06.214Z,1443510486.214 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T07:08:06.219Z,1443510486.219 [DropWeight] Loaded
2015-09-29T07:08:06.219Z,1443510486.219 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T07:08:06.372Z,1443510486.372 [DVL_micro] Loaded
2015-09-29T07:08:06.373Z,1443510486.373 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T07:08:06.481Z,1443510486.481 [NAL9602] Loaded
2015-09-29T07:08:06.481Z,1443510486.481 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T07:08:06.528Z,1443510486.528 [Onboard] Loaded
2015-09-29T07:08:06.528Z,1443510486.528 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T07:08:06.544Z,1443510486.544 [Radio_Surface] Loaded
2015-09-29T07:08:06.545Z,1443510486.545 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T07:08:06.547Z,1443510486.547 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T07:08:06.548Z,1443510486.548 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T07:08:06.708Z,1443510486.708 [DAT] Loaded
2015-09-29T07:08:06.708Z,1443510486.708 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T07:08:06.715Z,1443510486.715 [SCPI] Loaded
2015-09-29T07:08:06.715Z,1443510486.715 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T07:08:06.716Z,1443510486.716 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T07:08:06.717Z,1443510486.717 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T07:08:06.851Z,1443510486.851 [BuoyancyServo] Loaded
2015-09-29T07:08:06.852Z,1443510486.852 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T07:08:06.865Z,1443510486.865 [ElevatorServo] Loaded
2015-09-29T07:08:06.865Z,1443510486.865 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T07:08:06.877Z,1443510486.877 [MassServo] Loaded
2015-09-29T07:08:06.877Z,1443510486.877 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T07:08:06.889Z,1443510486.889 [RudderServo] Loaded
2015-09-29T07:08:06.889Z,1443510486.889 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T07:08:06.905Z,1443510486.905 [ThrusterServo] Loaded
2015-09-29T07:08:06.905Z,1443510486.905 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T07:08:06.906Z,1443510486.906 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T07:08:06.906Z,1443510486.906 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T07:08:07.108Z,1443510487.108 [InternalSim] Loaded
2015-09-29T07:08:07.108Z,1443510487.108 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T07:08:07.109Z,1443510487.109 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T07:08:07.109Z,1443510487.109 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T07:08:07.152Z,1443510487.152 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T07:08:07.157Z,1443510487.157 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T07:08:07.158Z,1443510487.158 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T07:08:07.164Z,1443510487.164 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T07:08:07.167Z,1443510487.167 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T07:08:07.168Z,1443510487.168 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T07:08:07.173Z,1443510487.173 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T07:08:07.173Z,1443510487.173 [Supervisor](DEBUG): Running supervisor.
2015-09-29T07:08:07.173Z,1443510487.173 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T07:08:07.180Z,1443510487.180 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T07:08:07.180Z,1443510487.180 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T07:08:07.181Z,1443510487.181 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T07:08:07.183Z,1443510487.183 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T07:08:07.184Z,1443510487.184 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T07:08:07.184Z,1443510487.184 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T07:08:07.185Z,1443510487.185 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T07:08:07.185Z,1443510487.185 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T07:08:07.187Z,1443510487.187 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T07:08:07.187Z,1443510487.187 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T07:08:07.188Z,1443510487.188 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T07:08:07.188Z,1443510487.188 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T07:08:07.189Z,1443510487.189 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T07:08:07.189Z,1443510487.189 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T07:08:07.190Z,1443510487.190 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T07:08:07.190Z,1443510487.190 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T07:08:07.190Z,1443510487.190 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T07:08:07.191Z,1443510487.191 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T07:08:07.191Z,1443510487.191 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T07:08:07.191Z,1443510487.191 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T07:08:07.192Z,1443510487.192 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T07:08:07.193Z,1443510487.193 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T07:08:07.193Z,1443510487.193 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T07:08:07.194Z,1443510487.194 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T07:08:07.194Z,1443510487.194 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T07:08:07.195Z,1443510487.195 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T07:08:07.195Z,1443510487.195 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T07:08:07.195Z,1443510487.195 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T07:08:07.196Z,1443510487.196 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T07:08:07.201Z,1443510487.201 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T07:08:07.236Z,1443510487.236 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T07:08:07.336Z,1443510487.336 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T07:08:07.376Z,1443510487.376 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T07:08:07.391Z,1443510487.391 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T07:08:07.406Z,1443510487.406 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T07:08:07.416Z,1443510487.416 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T07:08:07.433Z,1443510487.433 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T07:08:07.436Z,1443510487.436 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T07:08:07.436Z,1443510487.436 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T07:08:07.436Z,1443510487.436 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T07:08:07.437Z,1443510487.437 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T07:08:07.437Z,1443510487.437 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T07:08:07.437Z,1443510487.437 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T07:08:07.437Z,1443510487.437 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T07:08:07.438Z,1443510487.438 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T07:08:07.502Z,1443510487.502 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T07:08:07.514Z,1443510487.514 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T07:08:07.515Z,1443510487.515 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T07:08:07.587Z,1443510487.587 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T07:08:07.596Z,1443510487.596 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T07:08:07.621Z,1443510487.621 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T07:08:07.639Z,1443510487.639 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T07:08:07.645Z,1443510487.645 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T07:08:07.665Z,1443510487.665 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T07:08:07.670Z,1443510487.670 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T07:08:07.911Z,1443510487.911 [DVL_micro](INFO): Initializing
2015-09-29T07:08:08.076Z,1443510488.076 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:08:08.083Z,1443510488.083 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:08:08.232Z,1443510488.232 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T07:08:08.254Z,1443510488.254 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T07:08:08.276Z,1443510488.276 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T07:08:08.281Z,1443510488.281 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T07:08:08.296Z,1443510488.296 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T07:08:08.569Z,1443510488.569 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:08:08.571Z,1443510488.571 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T07:08:17.602Z,1443510497.602 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:17.935Z,1443510497.935 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:18.078Z,1443510498.078 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:18.479Z,1443510498.479 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003100
2015-09-29T07:08:18.482Z,1443510498.482 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:18.877Z,1443510498.877 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:19.277Z,1443510499.277 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:19.677Z,1443510499.677 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:20.076Z,1443510500.076 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:20.476Z,1443510500.476 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:20.885Z,1443510500.885 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:21.276Z,1443510501.276 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:21.678Z,1443510501.678 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:22.076Z,1443510502.076 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:22.476Z,1443510502.476 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:22.875Z,1443510502.875 [NAL9602](INFO): No messages in MT queue
2015-09-29T07:08:22.876Z,1443510502.876 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:23.276Z,1443510503.276 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:23.677Z,1443510503.677 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:24.076Z,1443510504.076 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:24.476Z,1443510504.476 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:24.876Z,1443510504.876 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:25.276Z,1443510505.276 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:25.676Z,1443510505.676 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:26.076Z,1443510506.076 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:26.476Z,1443510506.476 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:26.876Z,1443510506.876 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:27.277Z,1443510507.277 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:27.676Z,1443510507.676 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:27.711Z,1443510507.711 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T07:08:28.076Z,1443510508.076 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:28.477Z,1443510508.477 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:28.876Z,1443510508.876 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:29.276Z,1443510509.276 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:29.676Z,1443510509.676 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:30.076Z,1443510510.076 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:30.476Z,1443510510.476 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:30.876Z,1443510510.876 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:31.278Z,1443510511.278 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:31.676Z,1443510511.676 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T07:08:32.076Z,1443510512.076 [D