2015-09-29T06:36:23.512Z,1443508583.512 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T06:36:23.515Z,1443508583.515 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T06:36:23.515Z,1443508583.515 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T06:36:23.516Z,1443508583.516 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T06:36:23.519Z,1443508583.519 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T06:36:23.519Z,1443508583.519 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T06:36:23.522Z,1443508583.522 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T06:36:23.535Z,1443508583.535 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T06:36:23.539Z,1443508583.539 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T06:36:23.539Z,1443508583.539 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T06:36:23.540Z,1443508583.540 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T06:36:23.543Z,1443508583.543 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T06:36:23.543Z,1443508583.543 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T06:36:23.545Z,1443508583.545 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T06:36:23.546Z,1443508583.546 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T06:36:23.550Z,1443508583.550 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T06:36:23.976Z,1443508583.976 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T06:36:23.978Z,1443508583.978 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T06:36:24.183Z,1443508584.183 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T06:36:24.185Z,1443508584.185 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T06:36:24.334Z,1443508584.334 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T06:36:24.335Z,1443508584.335 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T06:36:24.488Z,1443508584.488 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T06:36:24.489Z,1443508584.489 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T06:36:24.583Z,1443508584.583 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T06:36:24.814Z,1443508584.814 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T06:36:24.815Z,1443508584.815 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T06:36:24.915Z,1443508584.915 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T06:36:24.916Z,1443508584.916 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T06:36:25.246Z,1443508585.246 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T06:36:25.247Z,1443508585.247 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T06:36:25.664Z,1443508585.664 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T06:36:25.665Z,1443508585.665 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T06:36:26.048Z,1443508586.048 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T06:36:26.050Z,1443508586.050 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T06:36:26.684Z,1443508586.684 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T06:36:26.685Z,1443508586.685 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T06:36:26.944Z,1443508586.944 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T06:36:26.945Z,1443508586.945 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T06:36:27.099Z,1443508587.099 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T06:36:27.100Z,1443508587.100 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T06:36:27.636Z,1443508587.636 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T06:36:27.637Z,1443508587.637 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T06:36:27.767Z,1443508587.767 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T06:36:27.769Z,1443508587.769 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T06:36:27.769Z,1443508587.769 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T06:36:27.774Z,1443508587.774 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T06:36:27.848Z,1443508587.848 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T06:36:27.988Z,1443508587.988 [VerticalControl] Loaded
2015-09-29T06:36:27.989Z,1443508587.989 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T06:36:27.990Z,1443508587.990 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T06:36:28.077Z,1443508588.077 [HorizontalControl] Loaded
2015-09-29T06:36:28.077Z,1443508588.077 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T06:36:28.078Z,1443508588.078 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T06:36:28.084Z,1443508588.084 [SpeedControl] Loaded
2015-09-29T06:36:28.084Z,1443508588.084 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T06:36:28.085Z,1443508588.085 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T06:36:28.086Z,1443508588.086 [LoopControl] Loaded
2015-09-29T06:36:28.086Z,1443508588.086 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T06:36:28.087Z,1443508588.087 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T06:36:28.087Z,1443508588.087 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T06:36:28.245Z,1443508588.245 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T06:36:28.258Z,1443508588.258 [SBIT] Loaded
2015-09-29T06:36:28.258Z,1443508588.258 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T06:36:28.259Z,1443508588.259 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T06:36:28.294Z,1443508588.294 [IBIT] Loaded
2015-09-29T06:36:28.295Z,1443508588.295 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T06:36:28.297Z,1443508588.297 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T06:36:28.454Z,1443508588.454 [CBIT] Loaded
2015-09-29T06:36:28.455Z,1443508588.455 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T06:36:28.455Z,1443508588.455 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T06:36:28.456Z,1443508588.456 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T06:36:28.493Z,1443508588.493 [DepthRateCalculator] Loaded
2015-09-29T06:36:28.494Z,1443508588.494 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T06:36:28.503Z,1443508588.503 [PitchRateCalculator] Loaded
2015-09-29T06:36:28.504Z,1443508588.504 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T06:36:28.516Z,1443508588.516 [SpeedCalculator] Loaded
2015-09-29T06:36:28.516Z,1443508588.516 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T06:36:28.534Z,1443508588.534 [TempGradientCalculator] Loaded
2015-09-29T06:36:28.534Z,1443508588.534 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T06:36:28.556Z,1443508588.556 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T06:36:28.556Z,1443508588.556 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T06:36:28.562Z,1443508588.562 [YawRateCalculator] Loaded
2015-09-29T06:36:28.562Z,1443508588.562 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T06:36:28.567Z,1443508588.567 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T06:36:28.568Z,1443508588.568 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T06:36:28.690Z,1443508588.690 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T06:36:28.690Z,1443508588.690 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T06:36:28.690Z,1443508588.690 [StratificationFrontDetector] Loaded
2015-09-29T06:36:28.690Z,1443508588.690 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T06:36:28.691Z,1443508588.691 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T06:36:28.692Z,1443508588.692 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T06:36:28.982Z,1443508588.982 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T06:36:28.982Z,1443508588.982 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T06:36:29.115Z,1443508589.115 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T06:36:29.115Z,1443508589.115 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T06:36:29.180Z,1443508589.180 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T06:36:29.181Z,1443508589.181 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T06:36:29.199Z,1443508589.199 [NavChart] Loaded
2015-09-29T06:36:29.200Z,1443508589.200 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T06:36:29.209Z,1443508589.209 [UniversalFixResidualReporter] Loaded
2015-09-29T06:36:29.209Z,1443508589.209 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T06:36:29.210Z,1443508589.210 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T06:36:29.211Z,1443508589.211 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T06:36:29.223Z,1443508589.223 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T06:36:29.224Z,1443508589.224 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T06:36:29.525Z,1443508589.525 [CTD_NeilBrown] Loaded
2015-09-29T06:36:29.525Z,1443508589.525 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T06:36:29.527Z,1443508589.527 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T06:36:29.527Z,1443508589.527 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T06:36:29.540Z,1443508589.540 [ISUS] Loaded
2015-09-29T06:36:29.541Z,1443508589.541 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T06:36:29.556Z,1443508589.556 [PAR_Licor] Loaded
2015-09-29T06:36:29.556Z,1443508589.556 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T06:36:29.617Z,1443508589.617 [WetLabsBB2FL] Loaded
2015-09-29T06:36:29.617Z,1443508589.617 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T06:36:29.619Z,1443508589.619 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T06:36:29.619Z,1443508589.619 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T06:36:29.620Z,1443508589.620 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T06:36:29.620Z,1443508589.620 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T06:36:30.349Z,1443508590.349 [AHRS_sp3003D] Loaded
2015-09-29T06:36:30.349Z,1443508590.349 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T06:36:30.544Z,1443508590.544 [DataOverHttps] Loaded
2015-09-29T06:36:30.545Z,1443508590.545 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T06:36:30.559Z,1443508590.559 [Depth_Keller] Loaded
2015-09-29T06:36:30.559Z,1443508590.559 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T06:36:30.564Z,1443508590.564 [DropWeight] Loaded
2015-09-29T06:36:30.564Z,1443508590.564 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T06:36:30.705Z,1443508590.705 [DVL_micro] Loaded
2015-09-29T06:36:30.706Z,1443508590.706 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T06:36:30.803Z,1443508590.803 [NAL9602] Loaded
2015-09-29T06:36:30.803Z,1443508590.803 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T06:36:30.847Z,1443508590.847 [Onboard] Loaded
2015-09-29T06:36:30.848Z,1443508590.848 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T06:36:30.859Z,1443508590.859 [Radio_Surface] Loaded
2015-09-29T06:36:30.860Z,1443508590.860 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T06:36:30.861Z,1443508590.861 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T06:36:30.861Z,1443508590.861 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T06:36:31.007Z,1443508591.007 [DAT] Loaded
2015-09-29T06:36:31.007Z,1443508591.007 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T06:36:31.014Z,1443508591.014 [SCPI] Loaded
2015-09-29T06:36:31.014Z,1443508591.014 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T06:36:31.015Z,1443508591.015 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T06:36:31.016Z,1443508591.016 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T06:36:31.138Z,1443508591.138 [BuoyancyServo] Loaded
2015-09-29T06:36:31.139Z,1443508591.139 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T06:36:31.152Z,1443508591.152 [ElevatorServo] Loaded
2015-09-29T06:36:31.152Z,1443508591.152 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T06:36:31.165Z,1443508591.165 [MassServo] Loaded
2015-09-29T06:36:31.165Z,1443508591.165 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T06:36:31.177Z,1443508591.177 [RudderServo] Loaded
2015-09-29T06:36:31.178Z,1443508591.178 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T06:36:31.190Z,1443508591.190 [ThrusterServo] Loaded
2015-09-29T06:36:31.190Z,1443508591.190 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T06:36:31.190Z,1443508591.190 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T06:36:31.191Z,1443508591.191 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T06:36:31.374Z,1443508591.374 [InternalSim] Loaded
2015-09-29T06:36:31.375Z,1443508591.375 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T06:36:31.375Z,1443508591.375 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T06:36:31.376Z,1443508591.376 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T06:36:31.415Z,1443508591.415 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T06:36:31.420Z,1443508591.420 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T06:36:31.421Z,1443508591.421 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T06:36:31.428Z,1443508591.428 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T06:36:31.429Z,1443508591.429 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T06:36:31.429Z,1443508591.429 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T06:36:31.434Z,1443508591.434 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T06:36:31.435Z,1443508591.435 [Supervisor](DEBUG): Running supervisor.
2015-09-29T06:36:31.435Z,1443508591.435 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T06:36:31.438Z,1443508591.438 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T06:36:31.439Z,1443508591.439 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T06:36:31.439Z,1443508591.439 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T06:36:31.441Z,1443508591.441 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T06:36:31.442Z,1443508591.442 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T06:36:31.443Z,1443508591.443 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T06:36:31.443Z,1443508591.443 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T06:36:31.443Z,1443508591.443 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T06:36:31.445Z,1443508591.445 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T06:36:31.445Z,1443508591.445 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T06:36:31.446Z,1443508591.446 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T06:36:31.447Z,1443508591.447 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T06:36:31.448Z,1443508591.448 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T06:36:31.448Z,1443508591.448 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T06:36:31.448Z,1443508591.448 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T06:36:31.448Z,1443508591.448 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T06:36:31.449Z,1443508591.449 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T06:36:31.449Z,1443508591.449 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T06:36:31.450Z,1443508591.450 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T06:36:31.450Z,1443508591.450 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T06:36:31.451Z,1443508591.451 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T06:36:31.452Z,1443508591.452 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T06:36:31.452Z,1443508591.452 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T06:36:31.453Z,1443508591.453 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T06:36:31.453Z,1443508591.453 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T06:36:31.454Z,1443508591.454 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T06:36:31.454Z,1443508591.454 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T06:36:31.454Z,1443508591.454 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T06:36:31.455Z,1443508591.455 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T06:36:31.461Z,1443508591.461 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T06:36:31.479Z,1443508591.479 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T06:36:31.519Z,1443508591.519 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T06:36:31.575Z,1443508591.575 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T06:36:31.584Z,1443508591.584 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T06:36:31.631Z,1443508591.631 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T06:36:31.638Z,1443508591.638 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T06:36:31.643Z,1443508591.643 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T06:36:31.643Z,1443508591.643 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T06:36:31.644Z,1443508591.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T06:36:31.644Z,1443508591.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T06:36:31.644Z,1443508591.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T06:36:31.644Z,1443508591.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T06:36:31.645Z,1443508591.645 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T06:36:31.645Z,1443508591.645 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T06:36:31.660Z,1443508591.660 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T06:36:31.709Z,1443508591.709 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T06:36:31.741Z,1443508591.741 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T06:36:31.741Z,1443508591.741 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T06:36:31.819Z,1443508591.819 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T06:36:31.821Z,1443508591.821 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T06:36:31.847Z,1443508591.847 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T06:36:31.850Z,1443508591.850 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T06:36:31.880Z,1443508591.880 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T06:36:31.897Z,1443508591.897 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T06:36:31.903Z,1443508591.903 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T06:36:32.090Z,1443508592.090 [DVL_micro](INFO): Initializing
2015-09-29T06:36:32.255Z,1443508592.255 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:36:32.275Z,1443508592.275 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:36:32.383Z,1443508592.383 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T06:36:32.395Z,1443508592.395 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T06:36:32.409Z,1443508592.409 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T06:36:32.428Z,1443508592.428 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T06:36:32.443Z,1443508592.443 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T06:36:32.658Z,1443508592.658 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:36:32.659Z,1443508592.659 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:36:32.938Z,1443508592.938 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:33.348Z,1443508593.348 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:42.365Z,1443508602.365 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:42.749Z,1443508602.749 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:42.898Z,1443508602.898 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:43.298Z,1443508603.298 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T06:36:43.301Z,1443508603.301 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:43.696Z,1443508603.696 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:44.096Z,1443508604.096 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:44.495Z,1443508604.495 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:44.895Z,1443508604.895 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:45.295Z,1443508605.295 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:45.696Z,1443508605.696 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:46.095Z,1443508606.095 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:46.496Z,1443508606.496 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:46.895Z,1443508606.895 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:47.295Z,1443508607.295 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:47.695Z,1443508607.695 [NAL9602](INFO): No messages in MT queue
2015-09-29T06:36:47.696Z,1443508607.696 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:48.096Z,1443508608.096 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:48.496Z,1443508608.496 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:48.895Z,1443508608.895 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:49.296Z,1443508609.296 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:49.696Z,1443508609.696 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:50.096Z,1443508610.096 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:50.496Z,1443508610.496 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:50.896Z,1443508610.896 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:51.296Z,1443508611.296 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:51.706Z,1443508611.706 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:52.105Z,1443508612.105 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:52.120Z,1443508612.120 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T06:36:52.505Z,1443508612.505 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:52.895Z,1443508612.895 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:53.306Z,1443508613.306 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:53.700Z,1443508613.700 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:54.095Z,1443508614.095 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:54.496Z,1443508614.496 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:54.896Z,1443508614.896 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:55.296Z,1443508615.296 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:55.696Z,1443508615.696 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:36:56.096Z,1443508616.096 [D