2015-09-29T06:28:27.818Z,1443508107.818 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T06:28:27.820Z,1443508107.820 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T06:28:27.821Z,1443508107.821 [SyncHandler](INFO): Protected caller Thread ID is 762
2015-09-29T06:28:27.821Z,1443508107.821 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T06:28:27.824Z,1443508107.824 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T06:28:27.824Z,1443508107.824 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T06:28:27.827Z,1443508107.827 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T06:28:27.839Z,1443508107.839 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T06:28:27.844Z,1443508107.844 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T06:28:27.844Z,1443508107.844 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T06:28:27.845Z,1443508107.845 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T06:28:27.848Z,1443508107.848 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T06:28:27.848Z,1443508107.848 [logger ThreadHandler](INFO): Protected caller Thread ID is 765
2015-09-29T06:28:27.850Z,1443508107.850 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T06:28:27.851Z,1443508107.851 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T06:28:27.854Z,1443508107.854 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T06:28:28.245Z,1443508108.245 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T06:28:28.247Z,1443508108.247 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T06:28:28.439Z,1443508108.439 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T06:28:28.441Z,1443508108.441 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T06:28:28.585Z,1443508108.585 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T06:28:28.585Z,1443508108.585 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T06:28:28.733Z,1443508108.733 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T06:28:28.733Z,1443508108.733 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T06:28:28.832Z,1443508108.832 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T06:28:29.052Z,1443508109.052 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T06:28:29.053Z,1443508109.053 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T06:28:29.148Z,1443508109.148 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T06:28:29.149Z,1443508109.149 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T06:28:29.461Z,1443508109.461 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T06:28:29.461Z,1443508109.461 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T06:28:29.861Z,1443508109.861 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T06:28:29.862Z,1443508109.862 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T06:28:30.213Z,1443508110.213 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T06:28:30.215Z,1443508110.215 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T06:28:30.809Z,1443508110.809 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T06:28:30.810Z,1443508110.810 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T06:28:31.045Z,1443508111.045 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T06:28:31.045Z,1443508111.045 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T06:28:31.164Z,1443508111.164 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T06:28:31.165Z,1443508111.165 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T06:28:31.676Z,1443508111.676 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T06:28:31.677Z,1443508111.677 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T06:28:31.856Z,1443508111.856 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T06:28:31.858Z,1443508111.858 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T06:28:31.859Z,1443508111.859 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T06:28:31.863Z,1443508111.863 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T06:28:31.937Z,1443508111.937 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T06:28:32.070Z,1443508112.070 [VerticalControl] Loaded
2015-09-29T06:28:32.070Z,1443508112.070 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T06:28:32.071Z,1443508112.071 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T06:28:32.150Z,1443508112.150 [HorizontalControl] Loaded
2015-09-29T06:28:32.151Z,1443508112.151 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T06:28:32.151Z,1443508112.151 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T06:28:32.157Z,1443508112.157 [SpeedControl] Loaded
2015-09-29T06:28:32.157Z,1443508112.157 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T06:28:32.158Z,1443508112.158 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T06:28:32.159Z,1443508112.159 [LoopControl] Loaded
2015-09-29T06:28:32.159Z,1443508112.159 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T06:28:32.159Z,1443508112.159 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T06:28:32.160Z,1443508112.160 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T06:28:32.321Z,1443508112.321 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T06:28:32.333Z,1443508112.333 [SBIT] Loaded
2015-09-29T06:28:32.334Z,1443508112.334 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T06:28:32.334Z,1443508112.334 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T06:28:32.368Z,1443508112.368 [IBIT] Loaded
2015-09-29T06:28:32.368Z,1443508112.368 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T06:28:32.370Z,1443508112.370 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T06:28:32.523Z,1443508112.523 [CBIT] Loaded
2015-09-29T06:28:32.523Z,1443508112.523 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T06:28:32.524Z,1443508112.524 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T06:28:32.525Z,1443508112.525 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T06:28:32.566Z,1443508112.566 [DepthRateCalculator] Loaded
2015-09-29T06:28:32.566Z,1443508112.566 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T06:28:32.571Z,1443508112.571 [PitchRateCalculator] Loaded
2015-09-29T06:28:32.572Z,1443508112.572 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T06:28:32.583Z,1443508112.583 [SpeedCalculator] Loaded
2015-09-29T06:28:32.583Z,1443508112.583 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T06:28:32.605Z,1443508112.605 [TempGradientCalculator] Loaded
2015-09-29T06:28:32.605Z,1443508112.605 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T06:28:32.622Z,1443508112.622 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T06:28:32.622Z,1443508112.622 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T06:28:32.627Z,1443508112.627 [YawRateCalculator] Loaded
2015-09-29T06:28:32.628Z,1443508112.628 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T06:28:32.628Z,1443508112.628 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T06:28:32.629Z,1443508112.629 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T06:28:32.748Z,1443508112.748 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T06:28:32.748Z,1443508112.748 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T06:28:32.749Z,1443508112.749 [StratificationFrontDetector] Loaded
2015-09-29T06:28:32.749Z,1443508112.749 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T06:28:32.749Z,1443508112.749 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T06:28:32.750Z,1443508112.750 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T06:28:33.042Z,1443508113.042 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T06:28:33.042Z,1443508113.042 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T06:28:33.170Z,1443508113.170 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T06:28:33.170Z,1443508113.170 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T06:28:33.234Z,1443508113.234 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T06:28:33.235Z,1443508113.235 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T06:28:33.252Z,1443508113.252 [NavChart] Loaded
2015-09-29T06:28:33.252Z,1443508113.252 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T06:28:33.258Z,1443508113.258 [UniversalFixResidualReporter] Loaded
2015-09-29T06:28:33.258Z,1443508113.258 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T06:28:33.258Z,1443508113.258 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T06:28:33.259Z,1443508113.259 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T06:28:33.269Z,1443508113.269 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T06:28:33.270Z,1443508113.270 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T06:28:33.564Z,1443508113.564 [CTD_NeilBrown] Loaded
2015-09-29T06:28:33.564Z,1443508113.564 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T06:28:33.568Z,1443508113.568 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T06:28:33.568Z,1443508113.568 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T06:28:33.581Z,1443508113.581 [ISUS] Loaded
2015-09-29T06:28:33.581Z,1443508113.581 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T06:28:33.596Z,1443508113.596 [PAR_Licor] Loaded
2015-09-29T06:28:33.596Z,1443508113.596 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T06:28:33.651Z,1443508113.651 [WetLabsBB2FL] Loaded
2015-09-29T06:28:33.656Z,1443508113.656 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T06:28:33.660Z,1443508113.660 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T06:28:33.660Z,1443508113.660 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T06:28:33.661Z,1443508113.661 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T06:28:33.661Z,1443508113.661 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T06:28:34.383Z,1443508114.383 [AHRS_sp3003D] Loaded
2015-09-29T06:28:34.383Z,1443508114.383 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T06:28:34.577Z,1443508114.577 [DataOverHttps] Loaded
2015-09-29T06:28:34.577Z,1443508114.577 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T06:28:34.590Z,1443508114.590 [Depth_Keller] Loaded
2015-09-29T06:28:34.591Z,1443508114.591 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T06:28:34.600Z,1443508114.600 [DropWeight] Loaded
2015-09-29T06:28:34.600Z,1443508114.600 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T06:28:34.751Z,1443508114.751 [DVL_micro] Loaded
2015-09-29T06:28:34.751Z,1443508114.751 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T06:28:34.859Z,1443508114.859 [NAL9602] Loaded
2015-09-29T06:28:34.859Z,1443508114.859 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T06:28:34.906Z,1443508114.906 [Onboard] Loaded
2015-09-29T06:28:34.906Z,1443508114.906 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T06:28:34.922Z,1443508114.922 [Radio_Surface] Loaded
2015-09-29T06:28:34.922Z,1443508114.922 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T06:28:34.924Z,1443508114.924 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T06:28:34.924Z,1443508114.924 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T06:28:35.081Z,1443508115.081 [DAT] Loaded
2015-09-29T06:28:35.082Z,1443508115.082 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T06:28:35.088Z,1443508115.088 [SCPI] Loaded
2015-09-29T06:28:35.089Z,1443508115.089 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T06:28:35.089Z,1443508115.089 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T06:28:35.090Z,1443508115.090 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T06:28:35.222Z,1443508115.222 [BuoyancyServo] Loaded
2015-09-29T06:28:35.222Z,1443508115.222 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T06:28:35.239Z,1443508115.239 [ElevatorServo] Loaded
2015-09-29T06:28:35.239Z,1443508115.239 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T06:28:35.251Z,1443508115.251 [MassServo] Loaded
2015-09-29T06:28:35.251Z,1443508115.251 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T06:28:35.263Z,1443508115.263 [RudderServo] Loaded
2015-09-29T06:28:35.263Z,1443508115.263 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T06:28:35.274Z,1443508115.274 [ThrusterServo] Loaded
2015-09-29T06:28:35.274Z,1443508115.274 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T06:28:35.275Z,1443508115.275 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T06:28:35.280Z,1443508115.280 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T06:28:35.474Z,1443508115.474 [InternalSim] Loaded
2015-09-29T06:28:35.474Z,1443508115.474 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T06:28:35.475Z,1443508115.475 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T06:28:35.476Z,1443508115.476 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T06:28:35.518Z,1443508115.518 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T06:28:35.523Z,1443508115.523 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T06:28:35.524Z,1443508115.524 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T06:28:35.530Z,1443508115.530 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T06:28:35.532Z,1443508115.532 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T06:28:35.532Z,1443508115.532 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 814
2015-09-29T06:28:35.537Z,1443508115.537 [Supervisor](INFO): Main Thread ID is 761
2015-09-29T06:28:35.537Z,1443508115.537 [Supervisor](DEBUG): Running supervisor.
2015-09-29T06:28:35.538Z,1443508115.538 [CommandLine ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T06:28:35.544Z,1443508115.544 [controlThread ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T06:28:35.545Z,1443508115.545 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T06:28:35.545Z,1443508115.545 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T06:28:35.547Z,1443508115.547 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T06:28:35.548Z,1443508115.548 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T06:28:35.549Z,1443508115.549 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T06:28:35.549Z,1443508115.549 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T06:28:35.550Z,1443508115.550 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T06:28:35.551Z,1443508115.551 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T06:28:35.551Z,1443508115.551 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T06:28:35.552Z,1443508115.552 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T06:28:35.553Z,1443508115.553 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T06:28:35.554Z,1443508115.554 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T06:28:35.554Z,1443508115.554 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T06:28:35.554Z,1443508115.554 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T06:28:35.554Z,1443508115.554 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T06:28:35.555Z,1443508115.555 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T06:28:35.555Z,1443508115.555 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T06:28:35.555Z,1443508115.555 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T06:28:35.556Z,1443508115.556 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T06:28:35.556Z,1443508115.556 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T06:28:35.557Z,1443508115.557 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T06:28:35.558Z,1443508115.558 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T06:28:35.558Z,1443508115.558 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T06:28:35.558Z,1443508115.558 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T06:28:35.559Z,1443508115.559 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T06:28:35.559Z,1443508115.559 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T06:28:35.560Z,1443508115.560 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T06:28:35.560Z,1443508115.560 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T06:28:35.565Z,1443508115.565 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T06:28:35.600Z,1443508115.600 [logger ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T06:28:35.696Z,1443508115.696 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T06:28:35.704Z,1443508115.704 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T06:28:35.753Z,1443508115.753 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T06:28:35.764Z,1443508115.764 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T06:28:35.777Z,1443508115.777 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 821
2015-09-29T06:28:35.829Z,1443508115.829 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T06:28:35.844Z,1443508115.844 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T06:28:35.844Z,1443508115.844 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T06:28:35.845Z,1443508115.845 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T06:28:35.845Z,1443508115.845 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T06:28:35.845Z,1443508115.845 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T06:28:35.845Z,1443508115.845 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T06:28:35.846Z,1443508115.846 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T06:28:35.846Z,1443508115.846 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T06:28:35.895Z,1443508115.895 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T06:28:35.929Z,1443508115.929 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T06:28:35.930Z,1443508115.930 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T06:28:35.995Z,1443508115.995 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T06:28:35.996Z,1443508115.996 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T06:28:36.015Z,1443508116.015 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T06:28:36.042Z,1443508116.042 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T06:28:36.068Z,1443508116.068 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T06:28:36.071Z,1443508116.071 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T06:28:36.085Z,1443508116.085 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T06:28:36.283Z,1443508116.283 [DVL_micro](INFO): Initializing
2015-09-29T06:28:36.465Z,1443508116.465 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:28:36.493Z,1443508116.493 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:28:36.616Z,1443508116.616 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T06:28:36.628Z,1443508116.628 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T06:28:36.638Z,1443508116.638 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T06:28:36.656Z,1443508116.656 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T06:28:36.676Z,1443508116.676 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T06:28:36.933Z,1443508116.933 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:28:36.934Z,1443508116.934 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:28:46.007Z,1443508126.007 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:46.351Z,1443508126.351 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:46.490Z,1443508126.490 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:46.891Z,1443508126.891 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003200
2015-09-29T06:28:46.894Z,1443508126.894 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:47.289Z,1443508127.289 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:47.690Z,1443508127.690 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:48.089Z,1443508128.089 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:48.489Z,1443508128.489 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:48.889Z,1443508128.889 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:49.292Z,1443508129.292 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:49.688Z,1443508129.688 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:50.089Z,1443508130.089 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:50.488Z,1443508130.488 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:50.889Z,1443508130.889 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:51.287Z,1443508131.287 [NAL9602](INFO): No messages in MT queue
2015-09-29T06:28:51.288Z,1443508131.288 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:51.688Z,1443508131.688 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:52.088Z,1443508132.088 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:52.489Z,1443508132.489 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:52.889Z,1443508132.889 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:53.288Z,1443508133.288 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:53.688Z,1443508133.688 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:54.088Z,1443508134.088 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:54.489Z,1443508134.489 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:54.888Z,1443508134.888 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:55.296Z,1443508135.296 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:55.688Z,1443508135.688 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:56.088Z,1443508136.088 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:56.103Z,1443508136.103 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T06:28:56.496Z,1443508136.496 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:56.889Z,1443508136.889 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:57.289Z,1443508137.289 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:57.689Z,1443508137.689 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:58.089Z,1443508138.089 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:58.488Z,1443508138.488 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:58.888Z,1443508138.888 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:59.289Z,1443508139.289 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:28:59.690Z,1443508139.690 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:29:00.089Z,1443508140.089 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:29:00.488Z,1443508140.488 [D