2015-09-29T06:12:40.994Z,1443507160.994 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T06:12:40.996Z,1443507160.996 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T06:12:40.997Z,1443507160.997 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T06:12:40.997Z,1443507160.997 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T06:12:40.998Z,1443507160.998 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T06:12:40.999Z,1443507160.999 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T06:12:41.002Z,1443507161.002 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T06:12:41.015Z,1443507161.015 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T06:12:41.016Z,1443507161.016 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T06:12:41.016Z,1443507161.016 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T06:12:41.017Z,1443507161.017 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T06:12:41.018Z,1443507161.018 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T06:12:41.018Z,1443507161.018 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T06:12:41.020Z,1443507161.020 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T06:12:41.021Z,1443507161.021 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T06:12:41.025Z,1443507161.025 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T06:12:41.404Z,1443507161.404 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T06:12:41.406Z,1443507161.406 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T06:12:41.587Z,1443507161.587 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T06:12:41.589Z,1443507161.589 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T06:12:41.724Z,1443507161.724 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T06:12:41.725Z,1443507161.725 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T06:12:41.863Z,1443507161.863 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T06:12:41.864Z,1443507161.864 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T06:12:41.952Z,1443507161.952 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T06:12:42.160Z,1443507162.160 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T06:12:42.160Z,1443507162.160 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T06:12:42.249Z,1443507162.249 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T06:12:42.249Z,1443507162.249 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T06:12:42.546Z,1443507162.546 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T06:12:42.547Z,1443507162.547 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T06:12:42.926Z,1443507162.926 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T06:12:42.927Z,1443507162.927 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T06:12:43.265Z,1443507163.265 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T06:12:43.267Z,1443507163.267 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T06:12:43.833Z,1443507163.833 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T06:12:43.834Z,1443507163.834 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T06:12:44.060Z,1443507164.060 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T06:12:44.061Z,1443507164.061 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T06:12:44.169Z,1443507164.169 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T06:12:44.170Z,1443507164.170 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T06:12:44.658Z,1443507164.658 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T06:12:44.659Z,1443507164.659 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T06:12:44.825Z,1443507164.825 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T06:12:44.827Z,1443507164.827 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T06:12:44.827Z,1443507164.827 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T06:12:44.832Z,1443507164.832 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T06:12:44.904Z,1443507164.904 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T06:12:45.032Z,1443507165.032 [VerticalControl] Loaded
2015-09-29T06:12:45.032Z,1443507165.032 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T06:12:45.033Z,1443507165.033 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T06:12:45.109Z,1443507165.109 [HorizontalControl] Loaded
2015-09-29T06:12:45.109Z,1443507165.109 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T06:12:45.110Z,1443507165.110 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T06:12:45.116Z,1443507165.116 [SpeedControl] Loaded
2015-09-29T06:12:45.116Z,1443507165.116 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T06:12:45.117Z,1443507165.117 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T06:12:45.117Z,1443507165.117 [LoopControl] Loaded
2015-09-29T06:12:45.118Z,1443507165.118 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T06:12:45.118Z,1443507165.118 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T06:12:45.119Z,1443507165.119 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T06:12:45.269Z,1443507165.269 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T06:12:45.281Z,1443507165.281 [SBIT] Loaded
2015-09-29T06:12:45.281Z,1443507165.281 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T06:12:45.282Z,1443507165.282 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T06:12:45.313Z,1443507165.313 [IBIT] Loaded
2015-09-29T06:12:45.313Z,1443507165.313 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T06:12:45.316Z,1443507165.316 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T06:12:45.458Z,1443507165.458 [CBIT] Loaded
2015-09-29T06:12:45.459Z,1443507165.459 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T06:12:45.459Z,1443507165.459 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T06:12:45.460Z,1443507165.460 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T06:12:45.498Z,1443507165.498 [DepthRateCalculator] Loaded
2015-09-29T06:12:45.498Z,1443507165.498 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T06:12:45.504Z,1443507165.504 [PitchRateCalculator] Loaded
2015-09-29T06:12:45.504Z,1443507165.504 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T06:12:45.516Z,1443507165.516 [SpeedCalculator] Loaded
2015-09-29T06:12:45.516Z,1443507165.516 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T06:12:45.534Z,1443507165.534 [TempGradientCalculator] Loaded
2015-09-29T06:12:45.535Z,1443507165.535 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T06:12:45.552Z,1443507165.552 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T06:12:45.553Z,1443507165.553 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T06:12:45.558Z,1443507165.558 [YawRateCalculator] Loaded
2015-09-29T06:12:45.559Z,1443507165.559 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T06:12:45.559Z,1443507165.559 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T06:12:45.560Z,1443507165.560 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T06:12:45.679Z,1443507165.679 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T06:12:45.680Z,1443507165.680 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T06:12:45.680Z,1443507165.680 [StratificationFrontDetector] Loaded
2015-09-29T06:12:45.680Z,1443507165.680 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T06:12:45.681Z,1443507165.681 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T06:12:45.681Z,1443507165.681 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T06:12:45.955Z,1443507165.955 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T06:12:45.955Z,1443507165.955 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T06:12:46.078Z,1443507166.078 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T06:12:46.079Z,1443507166.079 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T06:12:46.137Z,1443507166.137 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T06:12:46.137Z,1443507166.137 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T06:12:46.156Z,1443507166.156 [NavChart] Loaded
2015-09-29T06:12:46.156Z,1443507166.156 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T06:12:46.161Z,1443507166.161 [UniversalFixResidualReporter] Loaded
2015-09-29T06:12:46.162Z,1443507166.162 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T06:12:46.162Z,1443507166.162 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T06:12:46.163Z,1443507166.163 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T06:12:46.171Z,1443507166.171 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T06:12:46.172Z,1443507166.172 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T06:12:46.458Z,1443507166.458 [CTD_NeilBrown] Loaded
2015-09-29T06:12:46.459Z,1443507166.459 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T06:12:46.460Z,1443507166.460 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T06:12:46.460Z,1443507166.460 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T06:12:46.474Z,1443507166.474 [ISUS] Loaded
2015-09-29T06:12:46.474Z,1443507166.474 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T06:12:46.489Z,1443507166.489 [PAR_Licor] Loaded
2015-09-29T06:12:46.489Z,1443507166.489 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T06:12:46.543Z,1443507166.543 [WetLabsBB2FL] Loaded
2015-09-29T06:12:46.543Z,1443507166.543 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T06:12:46.544Z,1443507166.544 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T06:12:46.545Z,1443507166.545 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T06:12:46.545Z,1443507166.545 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T06:12:46.546Z,1443507166.546 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T06:12:47.201Z,1443507167.201 [AHRS_sp3003D] Loaded
2015-09-29T06:12:47.201Z,1443507167.201 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T06:12:47.370Z,1443507167.370 [DataOverHttps] Loaded
2015-09-29T06:12:47.370Z,1443507167.370 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T06:12:47.384Z,1443507167.384 [Depth_Keller] Loaded
2015-09-29T06:12:47.385Z,1443507167.385 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T06:12:47.390Z,1443507167.390 [DropWeight] Loaded
2015-09-29T06:12:47.390Z,1443507167.390 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T06:12:47.534Z,1443507167.534 [DVL_micro] Loaded
2015-09-29T06:12:47.534Z,1443507167.534 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T06:12:47.633Z,1443507167.633 [NAL9602] Loaded
2015-09-29T06:12:47.633Z,1443507167.633 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T06:12:47.678Z,1443507167.678 [Onboard] Loaded
2015-09-29T06:12:47.678Z,1443507167.678 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T06:12:47.690Z,1443507167.690 [Radio_Surface] Loaded
2015-09-29T06:12:47.690Z,1443507167.690 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T06:12:47.692Z,1443507167.692 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T06:12:47.692Z,1443507167.692 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T06:12:47.839Z,1443507167.839 [DAT] Loaded
2015-09-29T06:12:47.840Z,1443507167.840 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T06:12:47.846Z,1443507167.846 [SCPI] Loaded
2015-09-29T06:12:47.847Z,1443507167.847 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T06:12:47.848Z,1443507167.848 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T06:12:47.848Z,1443507167.848 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T06:12:47.973Z,1443507167.973 [BuoyancyServo] Loaded
2015-09-29T06:12:47.974Z,1443507167.974 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T06:12:47.987Z,1443507167.987 [ElevatorServo] Loaded
2015-09-29T06:12:47.987Z,1443507167.987 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T06:12:47.999Z,1443507167.999 [MassServo] Loaded
2015-09-29T06:12:47.000Z,1443507168.000 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T06:12:48.012Z,1443507168.012 [RudderServo] Loaded
2015-09-29T06:12:48.012Z,1443507168.012 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T06:12:48.024Z,1443507168.024 [ThrusterServo] Loaded
2015-09-29T06:12:48.024Z,1443507168.024 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T06:12:48.025Z,1443507168.025 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T06:12:48.026Z,1443507168.026 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T06:12:48.213Z,1443507168.213 [InternalSim] Loaded
2015-09-29T06:12:48.213Z,1443507168.213 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T06:12:48.214Z,1443507168.214 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T06:12:48.214Z,1443507168.214 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T06:12:48.254Z,1443507168.254 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T06:12:48.258Z,1443507168.258 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T06:12:48.259Z,1443507168.259 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T06:12:48.266Z,1443507168.266 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T06:12:48.267Z,1443507168.267 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T06:12:48.268Z,1443507168.268 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T06:12:48.273Z,1443507168.273 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T06:12:48.273Z,1443507168.273 [Supervisor](DEBUG): Running supervisor.
2015-09-29T06:12:48.273Z,1443507168.273 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T06:12:48.276Z,1443507168.276 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T06:12:48.277Z,1443507168.277 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T06:12:48.277Z,1443507168.277 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T06:12:48.279Z,1443507168.279 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T06:12:48.280Z,1443507168.280 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T06:12:48.281Z,1443507168.281 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T06:12:48.281Z,1443507168.281 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T06:12:48.282Z,1443507168.282 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T06:12:48.283Z,1443507168.283 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T06:12:48.283Z,1443507168.283 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T06:12:48.284Z,1443507168.284 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T06:12:48.285Z,1443507168.285 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T06:12:48.286Z,1443507168.286 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T06:12:48.286Z,1443507168.286 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T06:12:48.286Z,1443507168.286 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T06:12:48.286Z,1443507168.286 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T06:12:48.287Z,1443507168.287 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T06:12:48.287Z,1443507168.287 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T06:12:48.287Z,1443507168.287 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T06:12:48.288Z,1443507168.288 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T06:12:48.288Z,1443507168.288 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T06:12:48.289Z,1443507168.289 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T06:12:48.290Z,1443507168.290 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T06:12:48.290Z,1443507168.290 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T06:12:48.290Z,1443507168.290 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T06:12:48.291Z,1443507168.291 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T06:12:48.291Z,1443507168.291 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T06:12:48.292Z,1443507168.292 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T06:12:48.292Z,1443507168.292 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T06:12:48.297Z,1443507168.297 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T06:12:48.316Z,1443507168.316 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T06:12:48.356Z,1443507168.356 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T06:12:48.411Z,1443507168.411 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T06:12:48.420Z,1443507168.420 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T06:12:48.428Z,1443507168.428 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T06:12:48.481Z,1443507168.481 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T06:12:48.484Z,1443507168.484 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T06:12:48.484Z,1443507168.484 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T06:12:48.485Z,1443507168.485 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T06:12:48.485Z,1443507168.485 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T06:12:48.485Z,1443507168.485 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T06:12:48.485Z,1443507168.485 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T06:12:48.486Z,1443507168.486 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T06:12:48.486Z,1443507168.486 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T06:12:48.487Z,1443507168.487 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T06:12:48.557Z,1443507168.557 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T06:12:48.611Z,1443507168.611 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T06:12:48.612Z,1443507168.612 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T06:12:48.661Z,1443507168.661 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T06:12:48.662Z,1443507168.662 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T06:12:48.718Z,1443507168.718 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T06:12:48.720Z,1443507168.720 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T06:12:48.742Z,1443507168.742 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T06:12:48.747Z,1443507168.747 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T06:12:48.766Z,1443507168.766 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T06:12:48.976Z,1443507168.976 [DVL_micro](INFO): Initializing
2015-09-29T06:12:49.125Z,1443507169.125 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:12:49.148Z,1443507169.148 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:12:49.256Z,1443507169.256 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T06:12:49.271Z,1443507169.271 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T06:12:49.285Z,1443507169.285 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T06:12:49.291Z,1443507169.291 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T06:12:49.311Z,1443507169.311 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T06:12:49.553Z,1443507169.553 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:12:49.554Z,1443507169.554 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:12:58.427Z,1443507178.427 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:12:58.750Z,1443507178.750 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:12:58.894Z,1443507178.894 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:12:59.295Z,1443507179.295 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003000
2015-09-29T06:12:59.298Z,1443507179.298 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:12:59.692Z,1443507179.692 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:00.094Z,1443507180.094 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:00.493Z,1443507180.493 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:00.893Z,1443507180.893 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:01.293Z,1443507181.293 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:01.692Z,1443507181.692 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:02.102Z,1443507182.102 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:02.502Z,1443507182.502 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:02.903Z,1443507182.903 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:03.292Z,1443507183.292 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:03.701Z,1443507183.701 [NAL9602](INFO): No messages in MT queue
2015-09-29T06:13:03.702Z,1443507183.702 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:04.101Z,1443507184.101 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:04.501Z,1443507184.501 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:04.902Z,1443507184.902 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:05.302Z,1443507185.302 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:05.703Z,1443507185.703 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:06.101Z,1443507186.101 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:06.501Z,1443507186.501 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:06.902Z,1443507186.902 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:07.302Z,1443507187.302 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:07.692Z,1443507187.692 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:08.102Z,1443507188.102 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:08.501Z,1443507188.501 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:08.893Z,1443507188.893 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:08.928Z,1443507188.928 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T06:13:09.292Z,1443507189.292 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:09.692Z,1443507189.692 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:10.092Z,1443507190.092 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:10.492Z,1443507190.492 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:10.892Z,1443507190.892 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:11.293Z,1443507191.293 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:11.692Z,1443507191.692 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:12.092Z,1443507192.092 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:12.493Z,1443507192.493 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:13:12.892Z,1443507192.892 [D