2015-09-29T06:04:44.601Z,1443506684.601 [Supervisor](DEBUG): Initializing supervisor.
2015-09-29T06:04:44.605Z,1443506684.605 [SyncHandler](DEBUG): Created PCaller Thread at 4034C4E0
2015-09-29T06:04:44.605Z,1443506684.605 [SyncHandler](INFO): Protected caller Thread ID is 761
2015-09-29T06:04:44.606Z,1443506684.606 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2015-09-29T06:04:44.608Z,1443506684.608 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 4037C4E0
2015-09-29T06:04:44.609Z,1443506684.609 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 762
2015-09-29T06:04:44.611Z,1443506684.611 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2015-09-29T06:04:44.624Z,1443506684.624 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2015-09-29T06:04:44.628Z,1443506684.628 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 403AC4E0
2015-09-29T06:04:44.629Z,1443506684.629 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 763
2015-09-29T06:04:44.629Z,1443506684.629 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2015-09-29T06:04:44.632Z,1443506684.632 [logger ThreadHandler](DEBUG): Created PCaller Thread at 403DC4E0
2015-09-29T06:04:44.633Z,1443506684.633 [logger ThreadHandler](INFO): Protected caller Thread ID is 764
2015-09-29T06:04:44.635Z,1443506684.635 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2015-09-29T06:04:44.635Z,1443506684.635 [Supervisor](INFO): Looking for Config files in directory: Config/
2015-09-29T06:04:44.639Z,1443506684.639 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2015-09-29T06:04:45.025Z,1443506685.025 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2015-09-29T06:04:45.027Z,1443506685.027 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2015-09-29T06:04:45.220Z,1443506685.220 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2015-09-29T06:04:45.222Z,1443506685.222 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2015-09-29T06:04:45.365Z,1443506685.365 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2015-09-29T06:04:45.366Z,1443506685.366 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2015-09-29T06:04:45.513Z,1443506685.513 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2015-09-29T06:04:45.514Z,1443506685.514 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2015-09-29T06:04:45.608Z,1443506685.608 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2015-09-29T06:04:45.829Z,1443506685.829 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2015-09-29T06:04:45.830Z,1443506685.830 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2015-09-29T06:04:45.925Z,1443506685.925 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2015-09-29T06:04:45.925Z,1443506685.925 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2015-09-29T06:04:46.240Z,1443506686.240 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2015-09-29T06:04:46.240Z,1443506686.240 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2015-09-29T06:04:46.641Z,1443506686.641 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2015-09-29T06:04:46.642Z,1443506686.642 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2015-09-29T06:04:46.993Z,1443506686.993 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2015-09-29T06:04:46.995Z,1443506686.995 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2015-09-29T06:04:47.590Z,1443506687.590 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2015-09-29T06:04:47.591Z,1443506687.591 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2015-09-29T06:04:47.821Z,1443506687.821 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2015-09-29T06:04:47.822Z,1443506687.822 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2015-09-29T06:04:47.942Z,1443506687.942 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2015-09-29T06:04:47.943Z,1443506687.943 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2015-09-29T06:04:48.464Z,1443506688.464 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2015-09-29T06:04:48.464Z,1443506688.464 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2015-09-29T06:04:48.588Z,1443506688.588 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2015-09-29T06:04:48.590Z,1443506688.590 [Supervisor](INFO): Looking for Config files in directory: Config/(none)/
2015-09-29T06:04:48.590Z,1443506688.590 [Supervisor](FAULT): Ignoring configuration overrides from Data/persisted.cfg
2015-09-29T06:04:48.594Z,1443506688.594 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2015-09-29T06:04:48.668Z,1443506688.668 [VerticalControl](DEBUG): Construct VerticalControl.
2015-09-29T06:04:48.803Z,1443506688.803 [VerticalControl] Loaded
2015-09-29T06:04:48.803Z,1443506688.803 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2015-09-29T06:04:48.804Z,1443506688.804 [HorizontalControl](DEBUG): Construct HorizontalControl.
2015-09-29T06:04:48.884Z,1443506688.884 [HorizontalControl] Loaded
2015-09-29T06:04:48.885Z,1443506688.885 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2015-09-29T06:04:48.885Z,1443506688.885 [SpeedControl](DEBUG): Construct SpeedControl.
2015-09-29T06:04:48.891Z,1443506688.891 [SpeedControl] Loaded
2015-09-29T06:04:48.892Z,1443506688.892 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2015-09-29T06:04:48.892Z,1443506688.892 [LoopControl](DEBUG): Construct LoopControl.
2015-09-29T06:04:48.893Z,1443506688.893 [LoopControl] Loaded
2015-09-29T06:04:48.893Z,1443506688.893 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2015-09-29T06:04:48.894Z,1443506688.894 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2015-09-29T06:04:48.894Z,1443506688.894 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2015-09-29T06:04:49.051Z,1443506689.051 [SBIT](DEBUG): Construct Startup Built In Test.
2015-09-29T06:04:49.064Z,1443506689.064 [SBIT] Loaded
2015-09-29T06:04:49.064Z,1443506689.064 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2015-09-29T06:04:49.065Z,1443506689.065 [IBIT](DEBUG): Construct Initiated Built In Test.
2015-09-29T06:04:49.099Z,1443506689.099 [IBIT] Loaded
2015-09-29T06:04:49.099Z,1443506689.099 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2015-09-29T06:04:49.101Z,1443506689.101 [CBIT](DEBUG): Construct Continuous Built In Test.
2015-09-29T06:04:49.256Z,1443506689.256 [CBIT] Loaded
2015-09-29T06:04:49.256Z,1443506689.256 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2015-09-29T06:04:49.257Z,1443506689.257 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2015-09-29T06:04:49.258Z,1443506689.258 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2015-09-29T06:04:49.299Z,1443506689.299 [DepthRateCalculator] Loaded
2015-09-29T06:04:49.299Z,1443506689.299 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2015-09-29T06:04:49.304Z,1443506689.304 [PitchRateCalculator] Loaded
2015-09-29T06:04:49.305Z,1443506689.305 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2015-09-29T06:04:49.316Z,1443506689.316 [SpeedCalculator] Loaded
2015-09-29T06:04:49.316Z,1443506689.316 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2015-09-29T06:04:49.338Z,1443506689.338 [TempGradientCalculator] Loaded
2015-09-29T06:04:49.338Z,1443506689.338 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2015-09-29T06:04:49.355Z,1443506689.355 [VerticalTemperatureHomogeneityIndexCalculator] Loaded
2015-09-29T06:04:49.356Z,1443506689.356 [ComponentRegistry](DEBUG): SyncComponent "VerticalTemperatureHomogeneityIndexCalculator" handled in the control thread.
2015-09-29T06:04:49.361Z,1443506689.361 [YawRateCalculator] Loaded
2015-09-29T06:04:49.361Z,1443506689.361 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2015-09-29T06:04:49.362Z,1443506689.362 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2015-09-29T06:04:49.362Z,1443506689.362 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2015-09-29T06:04:49.481Z,1443506689.481 [StratificationFrontDetector](INFO): threshold set to: 0.399988 degC
2015-09-29T06:04:49.481Z,1443506689.481 [StratificationFrontDetector](DEBUG): (re)initializing
2015-09-29T06:04:49.481Z,1443506689.481 [StratificationFrontDetector] Loaded
2015-09-29T06:04:49.481Z,1443506689.481 [ComponentRegistry](DEBUG): SyncComponent "StratificationFrontDetector" handled in the control thread.
2015-09-29T06:04:49.482Z,1443506689.482 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2015-09-29T06:04:49.483Z,1443506689.483 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2015-09-29T06:04:49.769Z,1443506689.769 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2015-09-29T06:04:49.770Z,1443506689.770 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2015-09-29T06:04:49.903Z,1443506689.903 [DeadReckonUsingMultipleVelocitySources] Loaded
2015-09-29T06:04:49.903Z,1443506689.903 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2015-09-29T06:04:49.968Z,1443506689.968 [DeadReckonUsingSpeedCalculator] Loaded
2015-09-29T06:04:49.968Z,1443506689.968 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingSpeedCalculator" handled in the control thread.
2015-09-29T06:04:49.986Z,1443506689.986 [NavChart] Loaded
2015-09-29T06:04:49.986Z,1443506689.986 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2015-09-29T06:04:49.992Z,1443506689.992 [UniversalFixResidualReporter] Loaded
2015-09-29T06:04:49.992Z,1443506689.992 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2015-09-29T06:04:49.992Z,1443506689.992 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2015-09-29T06:04:49.993Z,1443506689.993 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2015-09-29T06:04:50.002Z,1443506690.002 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2015-09-29T06:04:50.003Z,1443506690.003 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2015-09-29T06:04:50.305Z,1443506690.305 [CTD_NeilBrown] Loaded
2015-09-29T06:04:50.306Z,1443506690.306 [ComponentRegistry](DEBUG): Component "CTD_NeilBrown" handled in its own thread.
2015-09-29T06:04:50.308Z,1443506690.308 [CTD_NeilBrown ThreadHandler](DEBUG): Created PCaller Thread at 4059D4E0
2015-09-29T06:04:50.309Z,1443506690.309 [CTD_NeilBrown ThreadHandler](INFO): Protected caller Thread ID is 810
2015-09-29T06:04:50.321Z,1443506690.321 [ISUS] Loaded
2015-09-29T06:04:50.322Z,1443506690.322 [ComponentRegistry](DEBUG): SyncComponent "ISUS" handled in the control thread.
2015-09-29T06:04:50.336Z,1443506690.336 [PAR_Licor] Loaded
2015-09-29T06:04:50.337Z,1443506690.337 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2015-09-29T06:04:50.396Z,1443506690.396 [WetLabsBB2FL] Loaded
2015-09-29T06:04:50.397Z,1443506690.397 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2015-09-29T06:04:50.400Z,1443506690.400 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 405CD4E0
2015-09-29T06:04:50.401Z,1443506690.401 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 811
2015-09-29T06:04:50.401Z,1443506690.401 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2015-09-29T06:04:50.402Z,1443506690.402 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2015-09-29T06:04:51.133Z,1443506691.133 [AHRS_sp3003D] Loaded
2015-09-29T06:04:51.133Z,1443506691.133 [ComponentRegistry](DEBUG): SyncComponent "AHRS_sp3003D" handled in the control thread.
2015-09-29T06:04:51.327Z,1443506691.327 [DataOverHttps] Loaded
2015-09-29T06:04:51.327Z,1443506691.327 [ComponentRegistry](DEBUG): SyncComponent "DataOverHttps" handled in the control thread.
2015-09-29T06:04:51.341Z,1443506691.341 [Depth_Keller] Loaded
2015-09-29T06:04:51.341Z,1443506691.341 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2015-09-29T06:04:51.346Z,1443506691.346 [DropWeight] Loaded
2015-09-29T06:04:51.346Z,1443506691.346 [ComponentRegistry](DEBUG): SyncComponent "DropWeight" handled in the control thread.
2015-09-29T06:04:51.503Z,1443506691.503 [DVL_micro] Loaded
2015-09-29T06:04:51.503Z,1443506691.503 [ComponentRegistry](DEBUG): SyncComponent "DVL_micro" handled in the control thread.
2015-09-29T06:04:51.607Z,1443506691.607 [NAL9602] Loaded
2015-09-29T06:04:51.608Z,1443506691.608 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2015-09-29T06:04:51.659Z,1443506691.659 [Onboard] Loaded
2015-09-29T06:04:51.659Z,1443506691.659 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2015-09-29T06:04:51.671Z,1443506691.671 [Radio_Surface] Loaded
2015-09-29T06:04:51.671Z,1443506691.671 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2015-09-29T06:04:51.676Z,1443506691.676 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 408114E0
2015-09-29T06:04:51.677Z,1443506691.677 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 812
2015-09-29T06:04:51.836Z,1443506691.836 [DAT] Loaded
2015-09-29T06:04:51.836Z,1443506691.836 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2015-09-29T06:04:51.843Z,1443506691.843 [SCPI] Loaded
2015-09-29T06:04:51.843Z,1443506691.843 [ComponentRegistry](DEBUG): SyncComponent "SCPI" handled in the control thread.
2015-09-29T06:04:51.844Z,1443506691.844 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2015-09-29T06:04:51.844Z,1443506691.844 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2015-09-29T06:04:51.974Z,1443506691.974 [BuoyancyServo] Loaded
2015-09-29T06:04:51.974Z,1443506691.974 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2015-09-29T06:04:51.991Z,1443506691.991 [ElevatorServo] Loaded
2015-09-29T06:04:51.992Z,1443506691.992 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2015-09-29T06:04:52.004Z,1443506692.004 [MassServo] Loaded
2015-09-29T06:04:52.004Z,1443506692.004 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2015-09-29T06:04:52.016Z,1443506692.016 [RudderServo] Loaded
2015-09-29T06:04:52.016Z,1443506692.016 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2015-09-29T06:04:52.032Z,1443506692.032 [ThrusterServo] Loaded
2015-09-29T06:04:52.032Z,1443506692.032 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2015-09-29T06:04:52.033Z,1443506692.033 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2015-09-29T06:04:52.033Z,1443506692.033 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2015-09-29T06:04:52.233Z,1443506692.233 [InternalSim] Loaded
2015-09-29T06:04:52.233Z,1443506692.233 [ComponentRegistry](DEBUG): SyncComponent "InternalSim" handled in the control thread.
2015-09-29T06:04:52.234Z,1443506692.234 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2015-09-29T06:04:52.235Z,1443506692.235 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2015-09-29T06:04:52.277Z,1443506692.277 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2015-09-29T06:04:52.282Z,1443506692.282 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2015-09-29T06:04:52.283Z,1443506692.283 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2015-09-29T06:04:52.289Z,1443506692.289 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2015-09-29T06:04:52.292Z,1443506692.292 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 408BF4E0
2015-09-29T06:04:52.293Z,1443506692.293 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 813
2015-09-29T06:04:52.297Z,1443506692.297 [Supervisor](INFO): Main Thread ID is 760
2015-09-29T06:04:52.298Z,1443506692.298 [Supervisor](DEBUG): Running supervisor.
2015-09-29T06:04:52.298Z,1443506692.298 [CommandLine ThreadHandler](INFO): Handler Thread ID is 814
2015-09-29T06:04:52.305Z,1443506692.305 [controlThread ThreadHandler](INFO): Handler Thread ID is 815
2015-09-29T06:04:52.305Z,1443506692.305 [controlThread](DEBUG): Initializing ControlThread
2015-09-29T06:04:52.306Z,1443506692.306 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2015-09-29T06:04:52.308Z,1443506692.308 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2015-09-29T06:04:52.309Z,1443506692.309 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2015-09-29T06:04:52.309Z,1443506692.309 [LoopControl](DEBUG): Initialize LoopControlComponent.
2015-09-29T06:04:52.310Z,1443506692.310 [SBIT](INFO): Initialize SBIT Component.
2015-09-29T06:04:52.310Z,1443506692.310 [SBIT](IMPORTANT): Tethys CM Info: SVN revision:12634
2015-09-29T06:04:52.311Z,1443506692.311 [SBIT](INFO): Kernel Reporting Different Release From Configuration.
Kernel Expected: 2.6.32-45-generic-pae
Kernel Reported: 2.6.27.8
2015-09-29T06:04:52.312Z,1443506692.312 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #102-Ubuntu SMP Wed Jan 2 22:10:16 UTC 2013
Kernel Reported: #641 PREEMPT Mon Sep 28 16:45:10 PDT 2015
2015-09-29T06:04:52.313Z,1443506692.313 [SBIT](INFO): Beginning SBIT in 20.000000 seconds.
2015-09-29T06:04:52.313Z,1443506692.313 [IBIT](INFO): Initialize IBIT Component.
2015-09-29T06:04:52.314Z,1443506692.314 [CBIT](DEBUG): Initialize CBIT Component.
2015-09-29T06:04:52.314Z,1443506692.314 [CBIT](FAULT): LAST RESTART WAS UNINTENTIONAL.
2015-09-29T06:04:52.315Z,1443506692.315 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2015-09-29T06:04:52.315Z,1443506692.315 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2015-09-29T06:04:52.315Z,1443506692.315 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2015-09-29T06:04:52.315Z,1443506692.315 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2015-09-29T06:04:52.316Z,1443506692.316 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2015-09-29T06:04:52.316Z,1443506692.316 [VerticalTemperatureHomogeneityIndexCalculator](DEBUG): (re)initializing
2015-09-29T06:04:52.317Z,1443506692.317 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2015-09-29T06:04:52.318Z,1443506692.318 [DeadReckonUsingMultipleVelocitySources](DEBUG): Initializing DeadReckonUsingMultipleVelocitySources component.
2015-09-29T06:04:52.318Z,1443506692.318 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T06:04:52.319Z,1443506692.319 [DeadReckonUsingMultipleVelocitySources](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T06:04:52.319Z,1443506692.319 [DeadReckonUsingSpeedCalculator](DEBUG): Initializing DeadReckonUsingSpeedCalculator component.
2015-09-29T06:04:52.319Z,1443506692.319 [DeadReckonUsingSpeedCalculator](INFO): Will consider orientation measurement stale after 120s.
2015-09-29T06:04:52.320Z,1443506692.320 [DeadReckonUsingSpeedCalculator](INFO): Will consider velocity measurement stale after 20s.
2015-09-29T06:04:52.320Z,1443506692.320 [NavChart](DEBUG): Initialize NavChart Navigation.
2015-09-29T06:04:52.321Z,1443506692.321 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2015-09-29T06:04:52.325Z,1443506692.325 [InternalSim](DEBUG):  InternalSim initializing...
2015-09-29T06:04:52.361Z,1443506692.361 [logger ThreadHandler](INFO): Handler Thread ID is 816
2015-09-29T06:04:52.473Z,1443506692.473 [CTD_NeilBrown ThreadHandler](INFO): Handler Thread ID is 817
2015-09-29T06:04:52.512Z,1443506692.512 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 818
2015-09-29T06:04:52.525Z,1443506692.525 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 819
2015-09-29T06:04:52.535Z,1443506692.535 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2015-09-29T06:04:52.548Z,1443506692.548 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 820
2015-09-29T06:04:52.592Z,1443506692.592 [NavChartDb](INFO): Looking for Electronic Nav Chart files in directory: Resources
2015-09-29T06:04:52.596Z,1443506692.596 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2015-09-29T06:04:52.596Z,1443506692.596 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2015-09-29T06:04:52.596Z,1443506692.596 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2015-09-29T06:04:52.597Z,1443506692.597 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2015-09-29T06:04:52.597Z,1443506692.597 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2015-09-29T06:04:52.597Z,1443506692.597 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2015-09-29T06:04:52.597Z,1443506692.597 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2015-09-29T06:04:52.598Z,1443506692.598 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2015-09-29T06:04:52.645Z,1443506692.645 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T06:04:52.656Z,1443506692.656 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2015-09-29T06:04:52.682Z,1443506692.682 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2015-09-29T06:04:52.733Z,1443506692.733 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2015-09-29T06:04:52.734Z,1443506692.734 [Default:A.GoToSurface](DEBUG): Construct GoToSurface.
2015-09-29T06:04:52.775Z,1443506692.775 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2015-09-29T06:04:52.777Z,1443506692.777 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2015-09-29T06:04:52.799Z,1443506692.799 [Default:D.Execute](DEBUG): Construct Execute.
2015-09-29T06:04:52.803Z,1443506692.803 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
xmlns:Guidance="Tethys/Guidance"
xmlns:Units="Tethys/Units"
xmlns:Universal="Tethys/Universal"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Sequence/>
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Sequence/>
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn 300</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2015-09-29T06:04:52.812Z,1443506692.812 [controlThread](DEBUG): Component order: CycleStarter,InternalSim,ISUS,PAR_Licor,AHRS_sp3003D,DataOverHttps,Depth_Keller,DropWeight,DVL_micro,NAL9602,Onboard,DAT,SCPI,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,VerticalTemperatureHomogeneityIndexCalculator,YawRateCalculator,StratificationFrontDetector,DeadReckonUsingMultipleVelocitySources,DeadReckonUsingSpeedCalculator,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2015-09-29T06:04:53.073Z,1443506693.073 [DVL_micro](INFO): Initializing
2015-09-29T06:04:53.224Z,1443506693.224 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:04:53.240Z,1443506693.240 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:04:53.348Z,1443506693.348 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2015-09-29T06:04:53.363Z,1443506693.363 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2015-09-29T06:04:53.384Z,1443506693.384 [MassServo](DEBUG): Initializing MassServo.
2015-09-29T06:04:53.396Z,1443506693.396 [RudderServo](DEBUG): Initializing RudderServo.
2015-09-29T06:04:53.412Z,1443506693.412 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2015-09-29T06:04:53.694Z,1443506693.694 [DeadReckonUsingMultipleVelocitySources](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:04:53.695Z,1443506693.695 [DeadReckonUsingSpeedCalculator](DEBUG): Starting up and don't have orientation data yet.
2015-09-29T06:05:02.835Z,1443506702.835 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:03.183Z,1443506703.183 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:03.300Z,1443506703.300 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:03.700Z,1443506703.700 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.003900
2015-09-29T06:05:03.703Z,1443506703.703 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:04.097Z,1443506704.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:04.497Z,1443506704.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:04.897Z,1443506704.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:05.297Z,1443506705.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:05.697Z,1443506705.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:06.097Z,1443506706.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:06.519Z,1443506706.519 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:06.897Z,1443506706.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:07.307Z,1443506707.307 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:07.706Z,1443506707.706 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:08.106Z,1443506708.106 [NAL9602](INFO): No messages in MT queue
2015-09-29T06:05:08.106Z,1443506708.106 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:08.505Z,1443506708.505 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:08.897Z,1443506708.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:09.297Z,1443506709.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:09.697Z,1443506709.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:10.145Z,1443506710.145 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:10.497Z,1443506710.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:10.897Z,1443506710.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:11.297Z,1443506711.297 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:11.697Z,1443506711.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:12.097Z,1443506712.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:12.498Z,1443506712.498 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:12.898Z,1443506712.898 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:12.932Z,1443506712.932 [SBIT](IMPORTANT): Beginning Startup BIT
2015-09-29T06:05:13.296Z,1443506713.296 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:13.697Z,1443506713.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:14.097Z,1443506714.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:14.497Z,1443506714.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:14.897Z,1443506714.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:15.298Z,1443506715.298 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:15.697Z,1443506715.697 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:16.097Z,1443506716.097 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:16.497Z,1443506716.497 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:16.897Z,1443506716.897 [DAT](ERROR): Could not read simulated DAT measurements from SimSlate.
2015-09-29T06:05:17.297Z,1443506717.297 [D